BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475310
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1245 0.0
> AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093569-22094626 REVERSE LENGTH=972
Length=972
Score = 1245 bits (674), Expect = 0.0
Identities = 849/930 (91%), Gaps = 26/930 (3%)
Strand=Plus/Plus
Query 1 ACTCTTTTGGCCTTATCCGAAATCTTTTTGTGGGCAGAATCGTCTGTGTCTTAGGCCAAT 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1 ACTCTTTTGGCCTTATCCGAAATCTTTTTGTGGGCAGAAACGTTTGTGTCTTAGGCCAAT 60
Query 61 CTCTCTGTCTCTCTGTCCAGAGAGAAATGGCAGTTTCAACAGGACCACTCTCGTGCTTCA 120
|||| |||||||||||||||||||||||||||| ||| ||| || ||||||||||||||
Sbjct 61 CTCTGTGTCTCTCTGTCCAGAGAGAAATGGCAGCATCATCAGTACTACTCTCGTGCTTCA 120
Query 121 AACT-CAATCATCAACCAAACCTTCTTCC-TGGCTGCAGCAAATCATCTAACCAAACACT 178
|| | | |||||||||||||||||| ||| |||||||| | | |||||||||||||||||
Sbjct 121 AA-TCCCATCATCAACCAAACCTTC-TCCATGGCTGCAACTACTCATCTAACCAAACACT 178
Query 179 TCTCAAATTCAGCTTTTC-ACCTCTAAAACCTCTCTTGATCTCCTCACGCAGCGGCTCAC 237
|||| ||||| |||||| ||| | |||||||||| ||||||||||||| ||| ||||||
Sbjct 179 CCTCAGATTCAACTTTTCAACC-CCAAAACCTCTCCTGATCTCCTCACGGAGCTGCTCAC 237
Query 238 GACGTTTCAGAGTCTTGCCAGAGACCATCACCGTCAAATTAGAAGAGGA-G-G-A-GA-- 291
|||| |||||||||||| |||||||||||||||||||||| |||||||| | | | ||
Sbjct 238 GACGATTCAGAGTCTTGTCAGAGACCATCACCGTCAAATTGGAAGAGGAGGAGAAGGATG 297
Query 292 A--G-G--A-------TCTTGATCCTCCTGCAGCCACTAACACTAAGCTCTACTTTGGTA 339
| | | | ||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 298 ATGGTGCAAGTGCTGTTCTTGATCCTCCTGCCGCCGTTAACACTAAGCTCTACTTCGGTA 357
Query 340 ACTTGCCTTACAATGTTGACAGTGCAACTCTGGCTCAAATCATTCAAGATTTCGCTAACC 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACTTGCCTTACAATGTTGACAGTGCAACTCTGGCTCAAATCATTCAAGATTTCGCTAACC 417
Query 400 CTGAGCTCGTTGAGGTTCTTTACAACAGAGACACAGGACAGAGTCGTGGATTCGCCTTTG 459
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 418 CTGAGCTCGTTGAGGTTCTTTACAACAGAGATACCGGACAGAGTCGTGGATTCGCCTTCG 477
Query 460 TAACCATGAGCAATGTCGAAGATTGCAACGTCATCATCGATAACCTCGATGGAACTGAGT 519
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 TTACCATGAGCAATGTCGAAGATTGCAACATCATCATCGATAACCTCGATGGAACTGAGT 537
Query 520 ATCTTGGTCGGGCTTTGAAAGTGAACTTTGCTGACAAACCAAAGCCTAATAAAGAACCTC 579
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 538 ATCTTGGTCGTGCTTTGAAAGTGAACTTTGCAGACAAACCAAAGCCTAACAAAGAACCTC 597
Query 580 TGTATCCAGAAACAGAGCATAAACTGTTTGTTGGTAACTTGTCTTGGACTGTTACTTCCG 639
||||||||||||||||||| || || |||||||||||||| || ||||||||||||||||
Sbjct 598 TGTATCCAGAAACAGAGCACAAGCTCTTTGTTGGTAACTTATCATGGACTGTTACTTCCG 657
Query 640 AGTCATTAGCTGGAGCGTTTAGAGAGTGTGGAGATGTGGTTGGAGCTAGAGTTGTGTATG 699
|||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||
Sbjct 658 AGTCATTAGCTGGAGCGTTTCGAGAATGTGGAGATGTGGTTGGGGCTAGAGTTGTGTTTG 717
Query 700 ATGGAGATACCGGAAGATCACGAGGTTATGGCTTTGTGTGTTACTCTTCCAAAGCGGAAA 759
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 718 ATGGAGATACAGGAAGATCACGGGGTTATGGCTTTGTATGTTACTCTTCCAAAGCAGAAA 777
Query 760 TGGAAACCGCGCTTGAATCGCTTGACGGATTTGAGCTTGAGGGTCGGGCGATTCGAGTAA 819
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 TGGAAACCGCTCTTGAATCGCTTGACGGATTTGAGCTGGAGGGTCGGGCGATTCGAGTAA 837
Query 820 AC-TTGGCTCAAGGGAAGAAATTTTGATATCATACAACAATATTGTGGAATCATTTTGAT 878
|| ||| ||||||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct 838 ACCTTG-CTCAAGGGAAGAAATTTTGATATCATACAACAACATTGTGTAATCATTTAGAG 896
Query 879 TTTTATACATTAGAGTTGTGTTTAAATTGA 908
||||||||||||||||| |||||| |||||
Sbjct 897 TTTTATACATTAGAGTTATGTTTATATTGA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5