BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475311
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 2968 0.0
> AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090238-22093060 REVERSE LENGTH=2052
Length=2052
Score = 2968 bits (1607), Expect = 0.0
Identities = 1855/1972 (94%), Gaps = 28/1972 (1%)
Strand=Plus/Plus
Query 37 TATTTTGCTTAAACCCTAAAA-CCTCATTTGGATTAGGTTTTCTCC-AATCTTATCCGCC 94
||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 63 TATTTTGCTTAAACCCTAAAACCCT-TTTTGGATTAGGTTTTCTCCAAATCTTATCCGCC 121
Query 95 GTGATAAAATCTGATTGCttttttctttttctttATGAAACTTTGATTTGTGGAATC-CG 153
|||||||||||||||||| || |||||||| |||||| |||||||||| ||| | ||
Sbjct 122 GTGATAAAATCTGATTGC----TT-TTTTTCTTCATGAAAGTTTGATTTGT-GAAACTCG 175
Query 154 ATGATTCTCTCACGCTCTGTCTCTGTGCTTCATTTGTGTGGAGTCTCATCTTCAGCGCCG 213
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 176 ATGATTCTCTCACGCTCTGTCTCCGTGCTTCATTTGTGTGGAGTCTCTTCTTCAGCGCCG 235
Query 214 TCGAAGCTCTTATCCCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTT 273
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCGAAGCTCTTATCTCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTT 295
Query 274 TCTTTCCGTTTAAGCTCTCTCAATCGATCTGACGCG-AAATGGGTTCGTGGGTTTGCGTC 332
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 296 TCTTTCCGTTTAAGCTCTCTCAATCGATCTGA-TAGAAAATGGGTTCGTGGGTTTGCGTC 354
Query 333 TACTACTGAAGCAGAAGTAGAGAAAAAGGGTAATGATACGTTTTTTGCCGACAATACCGT 392
| |||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||
Sbjct 355 TGCTACTGAAGCAGAAGTCGAGAAAAAGGGTAATGATACTTTTTTTGCTGACCATACCGT 414
Query 393 TTCTTGGAAGTCTCTTGGGTTATCAGATAACGTCTCTATAGCTCTTCGAGATTCTGGGTT 452
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 415 TTCTTGGAAGTCTCTTGGGTTATCAGATAATGTCTCTATAGCTCTTCGAGATTCTGGGTT 474
Query 453 CGATAGACCATCTCTCACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGT 512
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CGATAGACCATCTCTTACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGT 534
Query 513 GATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGATATCTTGCTCCAATAATTGA 572
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 535 GATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGTTATCTTGCTCCAATAATTGA 594
Query 573 TCGATTAACGAACACTGCTATTGATTCCGA-GTATACGAATGGGGAGGAAAGGCCGTTTC 631
|| |||||| ||||| ||| |||||||||| || ||||||| | |||||||| |||||||
Sbjct 595 TCAATTAACAAACACCGCTCTTGATTCCGAGGT-TACGAATAGAGAGGAAAGACCGTTTC 653
Query 632 CGCTTAAGAATCTCTCTCTTATCCTGTGTCCAAATGTGATGCTGTGTGAACAAGTGGTTA 691
||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 654 CGCTTAAGAATATCTCTCTTATTCTGTGTCCAAATGTGATGCTTTGTGAACAAGTGGTTC 713
Query 692 GGATGGTTAATGGTCTTCTTGGTGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTTT 751
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 714 GGATGGTTAATGGTCTTGTTGATGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTGT 773
Query 752 GT-GTTCCACAGGGTTGGCCAGATAGACTGCCTGATATAATTGTTTCGACACCCGCTGCT 810
|| | | | |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 774 GTGGAT-CTCAGGGTTGGCCAGATAGACTCCCTGATATAATTGTTTCGACACCTGCTGCT 832
Query 811 CTTCTGAATAATATTGAGCCGAAAAGAAATAGGCGCCTGGAATTTCTTCGATGTGTCAAA 870
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 833 CTTCTTAATAATATTGAGCCGAAAAGAAATAGGCGTCTGGAATTTCTACGATGTGTCAAA 892
Query 871 TATGTGGTCTTTGATGAAGCTGATATGCTTCTTTGCGGAAGCTTCCAGAATCAGATTATA 930
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 893 TATGTGGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATC 952
Query 931 CGTCTGATAAATATGCTGCGTTTCGATGAGAAGCAAGTGTCTCGTTTGGCTACATCCACA 990
|||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |
Sbjct 953 CGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTTTGGCTAAATCCA-A 1011
Query 991 -ATTGGCAAACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGA 1049
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TCTTGGCAGACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGA 1071
Query 1050 TGATGCTGAATTCGATGATGGATCTATTTCTGAGG-A-A-GA-G--GAAGAGGAAGAGGA 1103
|||||| ||||||||||| |||||||||||||||| | | || | ||||||||||||||
Sbjct 1072 TGATGCAGAATTCGATGAAGGATCTATTTCTGAGGAAGAGGATGAAGAAGAGGAAGAGGA 1131
Query 1104 ATATCTTGATGATACAGCACATATGCCTAGTGTTGAAGCTGAAGCTCGGTCAGACACCAA 1163
|||||||||||||| |||||| |||||||||||||||||||||||| ||||||| || ||
Sbjct 1132 ATATCTTGATGATATAGCACAAATGCCTAGTGTTGAAGCTGAAGCTGGGTCAGATACTAA 1191
Query 1164 AAAGGGCTGGAGGAGAGTGAGAAAGATCTACAGCCGTAGCAAGCAGTATATCTTCATTGC 1223
|||||||||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct 1192 AAAGGGCTGGAGAAGAGTGAGAAAGATCTATACCCGTAGTAAGCAGTATATTTTCATTGC 1251
Query 1224 AGCCACACTTCCAGTTAATGGGAAGAAGACTGCCGGAGGAATTTTGAAACATATGTTTCA 1283
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1252 AGCCACACTTCCAGTTAACGGGAAGAAGACTGCCGGGGGAATTTTGAAACATATGTTTCA 1311
Query 1284 AGATGCTATTTGGGTTAGTGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCATAA 1343
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1312 AGATGCTGTTTGGGTTAGCGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCAAAA 1371
Query 1344 ATGGGTTGAAGTCACAGTTGACTCACAAGTTGATGCTCTTATAGAGGCTGTAAAAAACAA 1403
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1372 ATGGGTTGAAGTCACAGTAGACTCACAGGTTGATGCTCTTATAGAGGCTGTAAAAAACAA 1431
Query 1404 TAACAACACCAACACAGAGAGGACGATGGTGTTTGCAAACACGGTTGAAGCTGTTGAAGC 1463
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1432 TAACAACACCAACACAGAGAGGACAATGGTGTTTGCAAACACGGTCGAAGCTGTTGAAGC 1491
Query 1464 AGTGGCCGATATATTGGAGAAAGCTAGTATTCAGTGTTATCGTTATCACAAGAACCACAA 1523
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1492 AGTGGCCGATATATTGGAGAAAGCTAGTATCCAGTGTTACCGTTATCACAAGAATCACAA 1551
Query 1524 GCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACCGGCGGTGTCTTTGTTTG 1583
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1552 GCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACTGGTGGTGTCTTTGTTTG 1611
Query 1584 CACCGATGCCGCTGCCCGAGGAGTTGATGTTCCTAATGTCTCTCACGTTATTCAGGCGGA 1643
||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1612 CACTGATGCGGCTGCCCGTGGAGTTGATGTTCCTAATGTCTCACACGTTATTCAGGCGGA 1671
Query 1644 TTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATAGGCCGAACAGCTAGAGCTGGGCA 1703
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1672 TTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATTGGTCGAACAGCTAGAGCTGGGCA 1731
Query 1704 ATATGGAACTGTGACCAGTCTATACACCGAGGCTAATCGTGATTTAGTAGAAGCAATACG 1763
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1732 ATATGGAACTGTGACCAGTCTATACACCGAGGCTAACCGTGATTTAGTAGAGGCAATCCG 1791
Query 1764 TGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAG 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 TGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAG 1851
Query 1824 GAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGGAGAAGCAGAGGAGCCTCAAGCTGT 1883
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1852 GAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTGT 1911
Query 1884 GAGATTTTAAGTTCTGTTGTTTTCTTTTTACAATTTCATAGGCGTTGTTTGTATATAGAA 1943
||||| ||||||||||||||||| |||| |||||| ||||| ||||| ||||||||||
Sbjct 1912 GAGATATTAAGTTCTGTTGTTTT-TTTT-ACAATTCCATAGAT-TTGTT-GTATATAGAA 1967
Query 1944 GTACGCAAAATCGAATAATCACTATTTGTTATTTTCTTGTACCAAttttttt 1995
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1968 GTACTCAAAATCGAATAATCACTATCTGTTATTTTCTTGTACCAAATTTTTT 2019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5