BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475311 Length=1995 Score E Sequences producing significant alignments: (Bits) Value AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 2968 0.0 > AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:22090238-22093060 REVERSE LENGTH=2052 Length=2052 Score = 2968 bits (1607), Expect = 0.0 Identities = 1855/1972 (94%), Gaps = 28/1972 (1%) Strand=Plus/Plus Query 37 TATTTTGCTTAAACCCTAAAA-CCTCATTTGGATTAGGTTTTCTCC-AATCTTATCCGCC 94 ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| Sbjct 63 TATTTTGCTTAAACCCTAAAACCCT-TTTTGGATTAGGTTTTCTCCAAATCTTATCCGCC 121 Query 95 GTGATAAAATCTGATTGCttttttctttttctttATGAAACTTTGATTTGTGGAATC-CG 153 |||||||||||||||||| || |||||||| |||||| |||||||||| ||| | || Sbjct 122 GTGATAAAATCTGATTGC----TT-TTTTTCTTCATGAAAGTTTGATTTGT-GAAACTCG 175 Query 154 ATGATTCTCTCACGCTCTGTCTCTGTGCTTCATTTGTGTGGAGTCTCATCTTCAGCGCCG 213 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 176 ATGATTCTCTCACGCTCTGTCTCCGTGCTTCATTTGTGTGGAGTCTCTTCTTCAGCGCCG 235 Query 214 TCGAAGCTCTTATCCCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTT 273 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 TCGAAGCTCTTATCTCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTT 295 Query 274 TCTTTCCGTTTAAGCTCTCTCAATCGATCTGACGCG-AAATGGGTTCGTGGGTTTGCGTC 332 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 296 TCTTTCCGTTTAAGCTCTCTCAATCGATCTGA-TAGAAAATGGGTTCGTGGGTTTGCGTC 354 Query 333 TACTACTGAAGCAGAAGTAGAGAAAAAGGGTAATGATACGTTTTTTGCCGACAATACCGT 392 | |||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||| Sbjct 355 TGCTACTGAAGCAGAAGTCGAGAAAAAGGGTAATGATACTTTTTTTGCTGACCATACCGT 414 Query 393 TTCTTGGAAGTCTCTTGGGTTATCAGATAACGTCTCTATAGCTCTTCGAGATTCTGGGTT 452 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 415 TTCTTGGAAGTCTCTTGGGTTATCAGATAATGTCTCTATAGCTCTTCGAGATTCTGGGTT 474 Query 453 CGATAGACCATCTCTCACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGT 512 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 CGATAGACCATCTCTTACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGT 534 Query 513 GATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGATATCTTGCTCCAATAATTGA 572 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 535 GATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGTTATCTTGCTCCAATAATTGA 594 Query 573 TCGATTAACGAACACTGCTATTGATTCCGA-GTATACGAATGGGGAGGAAAGGCCGTTTC 631 || |||||| ||||| ||| |||||||||| || ||||||| | |||||||| ||||||| Sbjct 595 TCAATTAACAAACACCGCTCTTGATTCCGAGGT-TACGAATAGAGAGGAAAGACCGTTTC 653 Query 632 CGCTTAAGAATCTCTCTCTTATCCTGTGTCCAAATGTGATGCTGTGTGAACAAGTGGTTA 691 ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 654 CGCTTAAGAATATCTCTCTTATTCTGTGTCCAAATGTGATGCTTTGTGAACAAGTGGTTC 713 Query 692 GGATGGTTAATGGTCTTCTTGGTGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTTT 751 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | Sbjct 714 GGATGGTTAATGGTCTTGTTGATGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTGT 773 Query 752 GT-GTTCCACAGGGTTGGCCAGATAGACTGCCTGATATAATTGTTTCGACACCCGCTGCT 810 || | | | |||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 774 GTGGAT-CTCAGGGTTGGCCAGATAGACTCCCTGATATAATTGTTTCGACACCTGCTGCT 832 Query 811 CTTCTGAATAATATTGAGCCGAAAAGAAATAGGCGCCTGGAATTTCTTCGATGTGTCAAA 870 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 833 CTTCTTAATAATATTGAGCCGAAAAGAAATAGGCGTCTGGAATTTCTACGATGTGTCAAA 892 Query 871 TATGTGGTCTTTGATGAAGCTGATATGCTTCTTTGCGGAAGCTTCCAGAATCAGATTATA 930 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 893 TATGTGGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATC 952 Query 931 CGTCTGATAAATATGCTGCGTTTCGATGAGAAGCAAGTGTCTCGTTTGGCTACATCCACA 990 |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| | Sbjct 953 CGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTTTGGCTAAATCCA-A 1011 Query 991 -ATTGGCAAACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGA 1049 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 TCTTGGCAGACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGA 1071 Query 1050 TGATGCTGAATTCGATGATGGATCTATTTCTGAGG-A-A-GA-G--GAAGAGGAAGAGGA 1103 |||||| ||||||||||| |||||||||||||||| | | || | |||||||||||||| Sbjct 1072 TGATGCAGAATTCGATGAAGGATCTATTTCTGAGGAAGAGGATGAAGAAGAGGAAGAGGA 1131 Query 1104 ATATCTTGATGATACAGCACATATGCCTAGTGTTGAAGCTGAAGCTCGGTCAGACACCAA 1163 |||||||||||||| |||||| |||||||||||||||||||||||| ||||||| || || Sbjct 1132 ATATCTTGATGATATAGCACAAATGCCTAGTGTTGAAGCTGAAGCTGGGTCAGATACTAA 1191 Query 1164 AAAGGGCTGGAGGAGAGTGAGAAAGATCTACAGCCGTAGCAAGCAGTATATCTTCATTGC 1223 |||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct 1192 AAAGGGCTGGAGAAGAGTGAGAAAGATCTATACCCGTAGTAAGCAGTATATTTTCATTGC 1251 Query 1224 AGCCACACTTCCAGTTAATGGGAAGAAGACTGCCGGAGGAATTTTGAAACATATGTTTCA 1283 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1252 AGCCACACTTCCAGTTAACGGGAAGAAGACTGCCGGGGGAATTTTGAAACATATGTTTCA 1311 Query 1284 AGATGCTATTTGGGTTAGTGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCATAA 1343 ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1312 AGATGCTGTTTGGGTTAGCGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCAAAA 1371 Query 1344 ATGGGTTGAAGTCACAGTTGACTCACAAGTTGATGCTCTTATAGAGGCTGTAAAAAACAA 1403 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1372 ATGGGTTGAAGTCACAGTAGACTCACAGGTTGATGCTCTTATAGAGGCTGTAAAAAACAA 1431 Query 1404 TAACAACACCAACACAGAGAGGACGATGGTGTTTGCAAACACGGTTGAAGCTGTTGAAGC 1463 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1432 TAACAACACCAACACAGAGAGGACAATGGTGTTTGCAAACACGGTCGAAGCTGTTGAAGC 1491 Query 1464 AGTGGCCGATATATTGGAGAAAGCTAGTATTCAGTGTTATCGTTATCACAAGAACCACAA 1523 |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| Sbjct 1492 AGTGGCCGATATATTGGAGAAAGCTAGTATCCAGTGTTACCGTTATCACAAGAATCACAA 1551 Query 1524 GCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACCGGCGGTGTCTTTGTTTG 1583 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1552 GCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACTGGTGGTGTCTTTGTTTG 1611 Query 1584 CACCGATGCCGCTGCCCGAGGAGTTGATGTTCCTAATGTCTCTCACGTTATTCAGGCGGA 1643 ||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1612 CACTGATGCGGCTGCCCGTGGAGTTGATGTTCCTAATGTCTCACACGTTATTCAGGCGGA 1671 Query 1644 TTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATAGGCCGAACAGCTAGAGCTGGGCA 1703 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1672 TTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATTGGTCGAACAGCTAGAGCTGGGCA 1731 Query 1704 ATATGGAACTGTGACCAGTCTATACACCGAGGCTAATCGTGATTTAGTAGAAGCAATACG 1763 |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct 1732 ATATGGAACTGTGACCAGTCTATACACCGAGGCTAACCGTGATTTAGTAGAGGCAATCCG 1791 Query 1764 TGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAG 1823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1792 TGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAG 1851 Query 1824 GAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGGAGAAGCAGAGGAGCCTCAAGCTGT 1883 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1852 GAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTGT 1911 Query 1884 GAGATTTTAAGTTCTGTTGTTTTCTTTTTACAATTTCATAGGCGTTGTTTGTATATAGAA 1943 ||||| ||||||||||||||||| |||| |||||| ||||| ||||| |||||||||| Sbjct 1912 GAGATATTAAGTTCTGTTGTTTT-TTTT-ACAATTCCATAGAT-TTGTT-GTATATAGAA 1967 Query 1944 GTACGCAAAATCGAATAATCACTATTTGTTATTTTCTTGTACCAAttttttt 1995 |||| |||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 1968 GTACTCAAAATCGAATAATCACTATCTGTTATTTTCTTGTACCAAATTTTTT 2019 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98844873105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5