BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475312
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59980.1 | Symbols: ATDJC39, ARL2 | ARG1-like 2 | chr1:22080... 2473 0.0
> AT1G59980.1 | Symbols: ATDJC39, ARL2 | ARG1-like 2 | chr1:22080789-22083651
FORWARD LENGTH=1685
Length=1685
Score = 2473 bits (1339), Expect = 0.0
Identities = 1569/1675 (94%), Gaps = 36/1675 (2%)
Strand=Plus/Plus
Query 1 TGTCTCGTCTCTTCTCTCTTGTCTTCTCCAGATCAGTGCTTGTGGGGTTTTCCCCATGGA 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 27 TGTCTCGTCTCTTCTCTCTTGTCTTCTCCAGATCAGTGTTTGTGGGGTTTTCCCAATGGA 86
Query 61 GCTTCTTCTCTCTTTGTCTCTCCTCCTAGGGTTTTGGTGTAACAACAATCCACAATTCAC 120
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 87 GCTTCTTCTCTCATTGTCTCTCCTCCTGGGGTTTTGGTGTAACAACAATCCTCAATTCAC 146
Query 121 GAGGCATGAATCATTATTCTCCCCACTTGCTAATTCTCTCGCGAAG-ATCCCCAGATTTT 179
||||||||||||||||||||||||| ||||| ||||||| || || |||||||||||||
Sbjct 147 GAGGCATGAATCATTATTCTCCCCATTTGCTTATTCTCTGGC-TAGAATCCCCAGATTTT 205
Query 180 ACTATATCATCGGCTTTGGGAATTTAACTGGACAACGATTT----TCAAACT-------- 227
|| | | |||| ||||||||||||||||||| ||| |||| |||||||
Sbjct 206 AC--TGT-ATCGACTTTGGGAATTTAACTGGAGAACCATTTCCACTCAAACTGGGAAACA 262
Query 228 -----CTGATATTGAAAAATGGCCACACATTCATCGAGATCGGAGAATAAAGACGCCGGA 282
||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 263 AAAACCTGTTATTGAACAATGGCCACTCATTCATCGAGATCGGAGAATAAAGACGCCGGA 322
Query 283 GAAGAAGATGAGCTCCGACGACGAAACCCTTATGAAGTCCTTGGCATCCCCAGCAATTCG 342
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 323 GAAGAAGATGAGCTCCGACGAAGGAACCCTTATGAAGTCCTTGGCATCCCCAGCAATTCG 382
Query 343 ACTGATCAAGAGATCAAAAGTGCTTATCGAAGAATGGCTCTCAGGTACCATCCTGATAAG 402
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 383 ACTGATCAAGAGATCAAAAGTGCTTATCGGAGAATGGCTCTCAGGTACCATCCTGATAAG 442
Query 403 AATCCAAATGATCCGGTTGCAGCGGATATGTTTAAGGAAGTTACATTTGCCTATGAGGTC 462
|||||| | || ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 443 AATCCAGACGACCCGGTTGCAGCAGAGATGTTTAAGGAAGTTACATTTGCTTATGAGGTC 502
Query 463 TTGTCTGATCCTGAGAATCGGCGTCTATATGATACTACTGGCTCTGAGGCTGTGGGTCCG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TTGTCTGATCCTGAGAATCGGCGTCTATATGATACTACTGGCTCTGAGGCTGTGGGTCCG 562
Query 523 GAAAATGAAGATCTTGAGCTTGATCTTTCGAGCTTAGGAGCTGTTAATACTATATTTGCC 582
||||||||||| || ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 563 GAAAATGAAGACCTAGAGCTCGATCTGTCAAGCTTAGGAGCTGTTAATACTATATTTGCT 622
Query 583 GCGCTGTTCAATAAGCTTGGTGTGCAGATTAAGACAACCGTCTCTGCAAATTTATTGGGG 642
|| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 623 GCATTGTTCAATAAGCTTGGTGTGCAAATTAAGACAACTGTTTCTGCAAATTTATTGGGG 682
Query 643 GAGGCGTTGAATGGTACGGTTACTACTTTGCCTCTCATGGTTGGGCAAGTCGTGTCCAGG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 GAGGCGTTGAATGGTACGGTTACTACTTTGCCTCTCATGGTTGGGCAAGTCGTGTCCAGG 742
Query 703 AAGGTTGAAAAGCAATCGGCTCACTTTTATTCGGTTACGTTAACAGAGGAAGAAGCCCAG 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 743 AAGGTTGAAAAGCAATCGGCTCACTTTTATTCGGTTACGTTAACAGAGGAAGAAGCTCAG 802
Query 763 GCTGGATTGATATGTAAGGTGCAGTCATCTGCTAAAAACAAATTCAAGTTGCTTTACTTT 822
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 803 GATGGATTGATATGTAAGGTGCATTCATCTGCTAAAAACAAATTCAAGTTGCTTTACTTT 862
Query 823 GAACAAGTAGAGAATGGAGGACTGAGCTTGGCCCTACAGGAAGACAGCAGGAAAACAGGA 882
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GACCAAGTAGAGAATGGAGGACTGAGCTTGGCCCTACAGGAAGACAGCAGGAAAACAGGA 922
Query 883 AAGCTCTCGACTGCAGGGTTGTATTTCTTCGGCTTCCCTGTTTATCGTTTCGATCACAGG 942
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 923 AAGCTCTCGACTGCAGGGTTGTATTTTTTCGGCTTCCCTGTTTATCGTTTCGATCACAGG 982
Query 943 GTCAATTCAAGGGCTCTCTCAAGGGATCCAGAAACCGGATTTTTCAAAAGGCTTGATACA 1002
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 983 GTTAATTCAAGGGCTCTCTCAAGGGATCCAGAGACCGGATTTTTCAAAAGGCTTGATGCA 1042
Query 1003 TTCCAACCGTTTGAGATCACTGAACTTAAAGCTGGTTCTCATGTCTTTGCTGTTTATGGT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TTCCAACCGTTTGAGATCACTGAACTTAAAGCTGGTTCTCATGTCTTTGCTGTTTATGGT 1102
Query 1063 GATAATTTTTTCAAAAGTGTGAGCTACACTCTAGAAATATTCTCATCTGCTCCATTTGCT 1122
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1103 GACAATTTTTTCAAAAGTGTGAGCTACACTCTAGAAATATTCTCATCTGCTCCATTCGGT 1162
Query 1123 AATGAGAAAGAGAGTCTTCGGTCCACTGAAGCGCAGATAGTCTCAAAAAGAACCGAGCTA 1182
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1163 AACGAGAAAGAGAGTCTTCGGTCCACTGAAGCGCAGATAGTCTCAAAAAGAACAGAGCTA 1222
Query 1183 TTGAAGTTTGAATCTGAATATCACGAGGTCTTTGCACAATTCACAGAGATGGCTAGTAAA 1242
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1223 TTGAAGTTTGAAGCTGAATATCACGAGGTCTTTGCACAATTCACAGAAATGGCTAGCAAA 1282
Query 1243 TGCACAGGGGAAGTACAAGAGATTGATGAGCTTCTTAAGAGGAGGAATGAGATATGTGCG 1302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1283 TGCACAGGGGAAGTACAAGAGATTGATGAGCTTCTAAAGAGGAGGAATGAGATATGTGCG 1342
Query 1303 GCGTACACAATCTTCCCACCATCgaagcaaggttcaagcaagaacagaagctggagcaag 1362
|| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1343 GCTTACACAATCTTCCCACCAACGAAGCAAGGTTCAAGCAAGAGCAGAAGCTGGAGCAAG 1402
Query 1363 ggaaagagcaagaagaagagcaGTCTTTTAATGGAACCTagagaagaaggagaagtcgca 1422
|| || | || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 --AA-GA--A-GA-G-----CAGTCTTTTAATGGAACCTAGAGAAGAAGGAGAAGTCGCA 1450
Query 1423 gttagggaagaagatggagtgaagaagaagaaATGGTACAACATTCAGCTTAGGCAAGAC 1482
||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 1451 GTTAGGGAAGAAGGTGGAGTCAAGAAGAAGAAATGGTACAATATTCAGCTGAGGCAAGAC 1510
Query 1483 AAGaaaaaaaaCTGACGAGAGTACTGAAATCTTGAGtttttttCAGGCACATAGCTATGT 1542
||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 1511 AAGAAAAAAAACTGAAGAGACTACTGCAATCTTGAGTTTTCTTCAGGCACATAGCTATGT 1570
Query 1543 TCGAGAAACGATATATAT--GTTTCAGTAATAATCTCTAGGGATTATCAACATCTTATAA 1600
|||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 1571 TCGAGAAACGATATATATATGTTTCAGTGATAATCTTTAGGGATTATCAACATCTTATAA 1630
Query 1601 AAAGTGGTCTATGGTTTATCTCTTTGCGCGTTTTGCCGGATTCATCTCTTCGTAT 1655
||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 1631 AAAGTGGTCTATGGTTTATCTCTTTGCACACTTTGCCTGATTCATCTCTTCGTAT 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81776687805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5