BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475314
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59960.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1472 0.0
AT1G59950.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 935 0.0
> AT1G59960.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22071292-22073147 REVERSE LENGTH=1179
Length=1179
Score = 1472 bits (797), Expect = 0.0
Identities = 960/1038 (92%), Gaps = 13/1038 (1%)
Strand=Plus/Plus
Query 32 GACTTCTGTTGAACCAATGTCTTTCACTTCAGTCCCCACGCTCGCCATCAGATCCGGACC 91
||||||| || ||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 65 GACTTCTCTTTAACCAATGTCTTTAACCACAGTCCCTACGCTCGCCATCAGATCCGGACC 124
Query 92 ATCCGGTCATCACTCGATGCCGGTTCTTGGTTTTGGAACAGCCGCTTCTCCGATACCGGA 151
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 125 ATCCGGTCATCACTCGATGCCGGTTCTTGGTTTTGGAACCGCCGCTTCTCCGCTACCGGA 184
Query 152 ACCAACGATGCTGAAAGAGACGGTGATGGAGGCCATCAAGCTTGGTTATCGCCATTTCGA 211
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 185 ACCAACGATGCTGAAAGAGACGGTGATTGAGGCTATTAAGCTTGGTTATCGCCATTTCGA 244
Query 212 CACGTCGCCGAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTGGCGGAGGCGGTTTC 271
||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 245 CACCTCTCCAAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTAGCGGAGGCGGTTTC 304
Query 272 TCTTGGCTTAGTCCGATCTCGATCTGAATTCTTTGTCACTACCAAGCTTTGGTGTGCTGA 331
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 305 ACTCGGCTTAGTTCGATCTCGATCTGAATTCTTTGTCACTACCAAACTTTGGTGTGCTGA 364
Query 332 TGCTCATGCTGGTCTCGTCGTACCGGCGATCAAACGGAGTTTGAAAAACCTTAAACTGGA 391
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TGCTCATGGTGGTCTCGTCGTACCGGCGATCAAACGGAGTTTGAAAAACCTTAAACTGGA 424
Query 392 CTATCTTGATCTTTATCTAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTT 451
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CTATCTTGATCTTTATATAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTT 484
Query 452 TCCCATTGATGAAGATGATTTTTTGCCAATGGATTTCGAAGTAGTGTGGTCTGAAATGGA 511
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 485 TCCTATTGATGAAGATGATTTTATGCCAATGGATTTCGAAGTAGTGTGGTCTGAAATGGA 544
Query 512 GGAGTGCCAAAGACTCGGGCTTGCAAAGTGTATAGGAGTAAGCAACTTTTCTTGTAAGAA 571
|||||| || ||||| ||||| ||||| || |||||||||||||| ||||| ||||||||
Sbjct 545 GGAGTGTCAGAGACTTGGGCTCGCAAAATGCATAGGAGTAAGCAATTTTTCATGTAAGAA 604
Query 572 GCTTCAACACATCCTCTCTATCGCGAAAATCCCGCCTAGCGTCAATCAGGTAAAAACTGT 631
|||||||||||| ||||||||||||| ||||||||||||||||||||| | ||
Sbjct 605 GCTTCAACACATACTCTCTATCGCGACAATCCCGCCTAGCGTCAATCA---A------GT 655
Query 632 TGAGATGAGTCCAATATGGCAACAAAGAAAACTAAGGGAGCTTTGTAGTTCGAACGACAT 691
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 656 TGAGATGAGTCCAATATGGCAACAAAGAAAGCTAAGGGAGCTTTGTAGATCGAACGACAT 715
Query 692 TGTTGTCACAGCTTATTCGGTGTTGGGATCTAGAGGGGCTTTTTGGGGAACTCCCAAAAT 751
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 716 TGTTGTCACAGCGTACTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCCCAAAAT 775
Query 752 TATGGAGTCTGACGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACTGTGGCCCAGGT 811
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 TATGGAATCTGATGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACAGTGGCCCAGGT 835
Query 812 GAGCATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTGGTGAAGAGCTTTACCAAAGA 871
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 836 GAGTATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTAGTGAAGAGCTTTACCAAAGA 895
Query 872 GAGATTGGAAGAGAATCTGAAA-ATATTTGATTGGTCTTTGACAGAAGAGGAGACACAGA 930
|||||| ||||||||||| ||| ||||||||||||||||||||||| || ||||||||||
Sbjct 896 GAGATTAGAAGAGAATCT-AAAGATATTTGATTGGTCTTTGACAGAGGATGAGACACAGA 954
Query 931 GAATCTCGACAGAGATTCCACAGTTCAGGAACCTCGGCGGCGAGGTTTATATCTCCAAGA 990
|||| || || |||||||| |||||||| ||| || ||| |||||||||| ||| ||||
Sbjct 955 GAATTTCAACTGAGATTCCTCAGTTCAGAAACGTCCACGGAGAGGTTTATACCTCTAAGA 1014
Query 991 AAGGTCCCATAAAATCCGTAGCCGAAATGTGGGACGGCGAGATCTGATCACTTC-TCGTG 1049
|||||||||| ||||| || ||||| ||||||||||| ||||||||||||||| | |||
Sbjct 1015 AAGGTCCCATCAAATCTGTCGCCGAGATGTGGGACGGGGAGATCTGATCACTTTGT-GTG 1073
Query 1050 AAAATAGCATAGTGAAAA 1067
|||||||| || ||||||
Sbjct 1074 AAAATAGCCTATTGAAAA 1091
> AT1G59950.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22068033-22070588 REVERSE LENGTH=963
Length=963
Score = 935 bits (506), Expect = 0.0
Identities = 810/955 (85%), Gaps = 27/955 (3%)
Strand=Plus/Plus
Query 92 ATCCGGTCATCACTCGATGCCGGTTCTTGGTTTTGGAACAGCCGCTTCTCCGATACCGGA 151
||||| |||||||| |||||||||||| | | ||||||| || || ||||| ||| ||
Sbjct 27 ATCCGTTCATCACTTGATGCCGGTTCTAGCTCTTGGAACTGCTGCGTCTCCTCCACCCGA 86
Query 152 ACCAACGA-TGCTGAAA-GAGACGGTGATGGAGGCCATCAAGCTTGGTTATCGCCATTTC 209
||||| | || ||||| | ||||||| |||| ||||||||||| |||||||| || |||
Sbjct 87 ACCAA-TAGTGTTGAAACG-GACGGTGTTGGAAGCCATCAAGCTCGGTTATCGTCACTTC 144
Query 210 GACACGTCGCCGAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTGGCGGAGGCGGTT 269
||||| || || |||||||| |||||||| ||| | || |||||||||||||||||||||
Sbjct 145 GACACCTCTCCTAGGTACCAGACGGAGGAACCGCTTGGTGAAGCTTTGGCGGAGGCGGTT 204
Query 270 TCTCTTGGCTTAGTCCGATCTCGATCTGAATTCTTTGTCACTACCAAGCTTTGGTGTGCT 329
||||| || ||| ||| ||||||||| ||| |||| |||||| | ||||| ||||||||
Sbjct 205 TCTCTCGGGTTAATCCAATCTCGATCAGAACTCTTCGTCACTTCTAAGCTATGGTGTGCC 264
Query 330 GATGCTCATGCTGGTCTCGTCGTACCGGCGATCAAACGGAGTTTGAAAAAC-CTTAAACT 388
|||||||||| ||| || || |||||||||||| ||||||||||| |||| |||||| |
Sbjct 265 GATGCTCATGGTGGCCTTGTTGTACCGGCGATCCAACGGAGTTTG-GAAACTCTTAAATT 323
Query 389 GGACTATCTTGATCTTTATCTAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAA 448
||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 324 GGACTATCTCGATCTCTACCTAATCCACTGGCCGGTTAGCTCGAAACCTGGTAAATACAA 383
Query 449 GTTTCCC-ATTGATGAAGATGATTTTTTGCCAATGGATT-TCGAAGTAGTGTGGTCTGAA 506
||| ||| || || |||||||| |||||||||||||||| | ||| ||| ||||||||
Sbjct 384 GTT-CCCTATAGAAGAAGATGACTTTTTGCCAATGGATTAT-GAAACAGTTTGGTCTGAG 441
Query 507 ATGGAGGAGTGCCAAAGACTCGG-GCTTGCAAAGTGTATAGGAGTAAGCAACTTTTCTTG 565
||||| ||||| || |||||||| | |||||||||||||||||||||||||||| || ||
Sbjct 442 ATGGAAGAGTGTCAGAGACTCGGAG-TTGCAAAGTGTATAGGAGTAAGCAACTTCTCATG 500
Query 566 TAAGAAGCTTCAACACATCCTCTCTATCGCGAAAATCCCGCCTAGCGTCAATCAGGTAAA 625
||||| || ||||||||||| || || || |||||||| ||||| |||||||| ||
Sbjct 501 CAAGAAACTCCAACACATCCTTTCAATAGCAAAAATCCCACCTAGTGTCAATCAAGT--- 557
Query 626 AACTGTTGAGATGAGTCCAATATGGCAACAAAGAAAACTAAGGGAGCTT-TGTA-GTTCG 683
| |||||||||||| |||||||||| |||||||| |||||| || |||| || ||
Sbjct 558 ----G--GAGATGAGTCCAGTATGGCAACAGAGAAAACTGAGGGAG-TTATGTAAGT-CG 609
Query 684 AACGACATTGTTGTCACAGCTTATTCGGTGTTGGGATCTAGAGGGGCTTTTTGGGGAACT 743
|| | ||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 610 AAAGGCATTGTTGTGACAGCTTATTCGGTGTTGGGATCGAGAGGAGCGTTTTGGGGAACT 669
Query 744 CCCAAAATTATGGAGTCTGACGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACTGTG 803
| |||||| ||||||||||| |||||||||||||| || || ||||||| |||||| ||
Sbjct 670 CACAAAATCATGGAGTCTGATGTTCTCAAAGAAATTGCTGAGGCAAAGGGAAAAACAGTA 729
Query 804 GCCCAGGTGAGCATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTGGTGAAGAGCTTT 863
|| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 730 GCTCAGGTGAGTATGAGATGGGCTTACGAGGAAGGAGTGAGCATGGTGGTGAAGAGCTTT 789
Query 864 ACCAAAGAGAGATTGGAAGAGAATCTGAAAATATTTGATTGGTCTTTGACAGAAGAGGAG 923
| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 790 AGGAAAGACAGATTGGAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAG 849
Query 924 ACACAGAGAATCTCGACAGAGATTCCACAGTTCAGGAACCTCGGCGGCGAGGTTTATATC 983
| ||||||||||||||| |||||| | ||| ||||| | | | ||| |||||||| |||
Sbjct 850 AAACAGAGAATCTCGACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTACATC 909
Query 984 TCCAAGAAAGGTCCCATAAAATCCGT-AGCCGAAATGTGGGACGGCGAGATCTGA 1037
|| |||||||||| |||||||| || | |||| ||||||||||| |||||||||
Sbjct 910 TCGGAGAAAGGTCCTATAAAATCTGTCA-CCGAGATGTGGGACGGTGAGATCTGA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5