BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475325
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59840.1 | Symbols: CCB4 | cofactor assembly of complex C | ... 1489 0.0
> AT1G59840.1 | Symbols: CCB4 | cofactor assembly of complex C
| chr1:22026546-22028419 FORWARD LENGTH=1162
Length=1162
Score = 1489 bits (806), Expect = 0.0
Identities = 990/1077 (92%), Gaps = 19/1077 (2%)
Strand=Plus/Plus
Query 1 CATCTTCAATGAAAGCGAGAATCA---TCCTCCAAATTCAAATCCCTTGGAACCCTAATC 57
||||||||||| |||||||||||| |||||| ||||||||||||||||| | ||||||
Sbjct 16 CATCTTCAATGGAAGCGAGAATCATCCTCCTCCGAATTCAAATCCCTTGGAGCGCTAATC 75
Query 58 GCAAATTCTCTCGTACTCCATCAGATTTCCCGCGCTTTATCAGAGCTTATTCTTCTTCTT 117
|| ||||||||| | |||| | ||||||||| || ||||||||||| |||||||||
Sbjct 76 GCCAATTCTCTCATCCTCCTTTAGATTTCCCTCGTTTTATCAGAGC---TTCTTCTTC-- 130
Query 118 CTTCAACCTCACAGAAGCCGAGAAGTTACAG-AGGTCCGAAACCGAGCAAGAATTTGGTA 176
| ||||||||||||||||||| || |||| | ||||||||||||||| |||||||| |||
Sbjct 131 C-TCAACCTCACAGAAGCCGAAAACTTAC-GAAGGTCCGAAACCGAGGAAGAATTTAGTA 188
Query 177 GCTGATTTCATTTCCAAAAACGATGACTTGGTTCGGAGCTTACCGATCTACGTCGGAGGC 236
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 189 GCTGATTTCATTTCCAAAAACGATGACTTGGTTCGAAGCTTACCGATCTACGTCGGGGGC 248
Query 237 GCTTCTCTTTTAGCTGTTCTCTTCAATCGGACTGTTTCCGGTATCGCTCCTGTTGCCGAT 296
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 249 GCTTCTCTTTTGGCCGTTCTCTTTAATCGGACTGTTTCCGGTATCGCTCCTGTTGCCGAT 308
Query 297 GCTAGCAGCTCTCAGTCTAGAGCAGATCTATTGGCACTTGGCTTGGCTGTCACCAATTTA 356
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 309 GCTAGCAGCTCACAGTCTAGAGCAGATCTATTAGCGCTTGGCTTGGCTGTCACCAATCTA 368
Query 357 TTGACTGGTTTAGTCTGGTTATCGATTCGACCTAAGTCCATAACACCTGTACAA-CCTG- 414
||||| |||||||||||||||||||||||||||||||| |||||||||||| || || |
Sbjct 369 TTGACCGGTTTAGTCTGGTTATCGATTCGACCTAAGTCAATAACACCTGTA-AATCC-GA 426
Query 415 ACGGTGTCGAGTGGAAAGTTGTAGAATCCGGTCTTCCTGCATCGGTAGTTTCCGAATTGT 474
| ||||| || || |||||||||||||| | ||||||||||||| | |||||||| ||||
Sbjct 427 AAGGTGTGGAATGCAAAGTTGTAGAATCTGATCTTCCTGCATCGATGGTTTCCGAGTTGT 486
Query 475 TATGGGCTTGGGAATCTTTTAAGGTAGCAACATGTTGTAAGTCTCTAGTTATTGTCTACA 534
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TATGGGCTTGGGAATCTCTTAAGGTAGCAACATGTTGTAAGTCTCTAGTTATTGTCTACA 546
Query 535 ATGGAATTTGCCTTATTCAAATTGGGATGGTTGCTGAATCTCCTGAAGATAAGAAAGCAG 594
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct 547 ATGGAATTTGCCTTATTCAAATTGGGATGGTAGCTGAATCTCCAGAAGATAAGAAAACAG 606
Query 595 TCATAGTAAACACCGATAAGCTGATGCAAGGATCGGTTTACCGAGGTGTAATGAAATCTA 654
|||||||||| ||||||||| |||||||||||||||||||| |||| || |||||||| |
Sbjct 607 TCATAGTAAAGACCGATAAGTTGATGCAAGGATCGGTTTACAGAGGGGTTATGAAATCCA 666
Query 655 AAGCACAGAGTTACTTGGCCAATCTTTCTCTTTATCCTGGGAGATCAGAGCTACCATTTC 714
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 667 AAGCACAGAGTTACTTGGCTAATCTTTCTCTTTATCCTGGGAGATCAGAGCTGCCATTTC 726
Query 715 TACCTGCAAATACACAGGCGGTGATTTTGCAGCCGCTTGGAGATAAAGGAATCGCAGTCA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TACCTGCAAATACACAGGCGGTGATTTTGCAGCCGCTTGGAGATAAAGGAATCGCAGTCA 786
Query 775 TTGGTGGAAACACGATTAGAGGCTTCACGTCAGCAGACCAGGCTTGGATTTCTTCAATTG 834
|||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 787 TTGGTGGAAATACGATTAGAGGATTCACGTCTTCAGACCAGGCTTGGATTTCTTCAATTG 846
Query 835 GGGAGAAGCTAGATGCGACACTGGGGAGATATTTTATTGATTCTGATGAGATTTCCAGAG 894
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 847 GGGAGAAGCTAGATGCGACACTGGGGAGATATTTTGTTGATTCTGATGAGATTTCCAGAG 906
Query 895 TAACAGTTTGAAAGCAACCAGACCGGAAAAA-CGGAAAA-GGATGTAATCATCTTTCGAA 952
||||||||||||||| |||||||| |||||| | ||||| |||| ||||||| || ||||
Sbjct 907 TAACAGTTTGAAAGCCACCAGACCAGAAAAAACAGAAAATGGATATAATCATATTGCGAA 966
Query 953 AACACATTACAAGGATCGATCACTAAAGGTAATTGTTCATTGTG--ATCATGTGGTTATA 1010
||||||||||| | || || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 967 AACACATTACATGCATTGAGAACTAAAGGTAACTGTTCATTGTGTGATCATGTGGTTATA 1026
Query 1011 TAAAGTTGAAATGAATTCATTGTGTGATCATGTGGTTACATAAAGTCGAAATGAATT 1067
|||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1027 CAAAGTTCAAATGAATTCATTGTGTGATCATGTAGTTACATAAAGTCGAAATAAATT 1083
Score = 134 bits (72), Expect = 2e-30
Identities = 88/96 (92%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 993 TGTGATCATGTGGTTATATAAAGTTGAAATGAATTCATTGTGTGATCATGTGGTTACATA 1052
||||||||||| |||| ||||||| ||||| |||||| ||||| |||||||||||||||
Sbjct 1049 TGTGATCATGTAGTTACATAAAGTCGAAATAAATTCAATGTGTCATCATGTGGTTACATT 1108
Query 1053 AAGTCGAAATGAATTGTAAAAATAGCTTCAGAAAAC 1088
|||| |||||||||||||||||||||||||||||||
Sbjct 1109 AAGTTGAAATGAATTGTAAAAATAGCTTCAGAAAAC 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53312978790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5