BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475327
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59830.1 | Symbols: PP2A-1 | protein phosphatase 2A-2 | chr1... 1973 0.0
AT1G10430.1 | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1... 1103 0.0
> AT1G59830.1 | Symbols: PP2A-1 | protein phosphatase 2A-2 | chr1:22020519-22022484
REVERSE LENGTH=1301
Length=1301
Score = 1973 bits (1068), Expect = 0.0
Identities = 1231/1305 (94%), Gaps = 29/1305 (2%)
Strand=Plus/Plus
Query 3 AATAATAAATATCCATTTTTGTGTG--ATGAGAGAAACCAAACCAAAGACGGGCCAGAGC 60
||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 7 AATAATAAATATCCA-TTTTGTGTGATATGAGAGAAACAAAACCAAAGACGAGCCAGAGC 65
Query 61 CACCTCTAAAACAATCGGCGACTTCTCCTCCTCCTCCACCGTCGCCGCCGTGTTCGATTT 120
||||||||| || ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 66 CACCTCTAACACCATCGGCGACTTCTCCTCCTACTCCTCCGTCGCCGACGTGTTCGATTT 125
Query 121 ACAACGATTCGGTGGCTAATCG-T-T-AGATTTTGAATTAAAGGTTAAAGGAGACGACGA 177
|||||||||||||||||| | | | | |||||| ||||||||||||||||||||||||||
Sbjct 126 ACAACGATTCGGTGGCTATTGGTTGTAAGATTTAGAATTAAAGGTTAAAGGAGACGACGA 185
Query 178 CGAGAGATGCCGTCAAACGGAGATCTCGACCGTCAGATCGAACAGCTTATGGAGTGTAAA 237
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 186 CGAGAGATGCCGTTAAACGGAGATCTCGACCGTCAGATCGAACAGCTAATGGAGTGTAAG 245
Query 238 CCGTTGGGTGAAGCAGACGTGAAGATCCTCTGCGATCAAGCCAAAGCGATTCTCGTTGAG 297
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 246 CCGTTAGGTGAAGCAGACGTGAAGATCCTTTGCGATCAAGCTAAAGCGATTCTTGTTGAG 305
Query 298 GAATATAATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGACAG 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 306 GAATATAATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGCCAG 365
Query 358 TTTTATGACCTAATTGAGCTTTTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTC 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTTTATGACCTAATTGAGCTATTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTC 425
Query 418 TTCATGGGTGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTTTATTGGTG 477
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 426 TTCATGGGAGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTCTATTGGTG 485
Query 478 GCACTGAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGTCGT 537
||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 486 GCATTAAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGCCGT 545
Query 538 CAGATTACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAAT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CAGATTACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAAT 605
Query 598 GTGTGGAAGTATTTTACGGACCTTTTCGATTATCTTCCTCTTACAGCACTCATAGAGAGT 657
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 606 GTGTGGAAGTATTTTACGGACCTTTTCGATTATCTCCCTCTTACAGCACTCATAGAGAGT 665
Query 658 CAGGTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACCCTTGACAATATCCGA 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 666 CAGGTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACTCTTGACAATATCCGA 725
Query 718 AGCTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGCTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCT 785
Query 778 GATCCAGATGATCGTTGTGGATGGGGAATATCTCCCCGTGGTGCTGGTTACACGTTTGGA 837
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 786 GATCCCGACGATCGTTGTGGATGGGGAATATCTCCTCGTGGTGCTGGTTACACGTTTGGA 845
Query 838 CAGGACATTGCTACTCAGTTTAATCATAACAATGGACTGAGTCTGATATCAAGAGCGCAT 897
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 846 CAGGACATTGCTACTCAGTTTAATCATAACAATGGACTGAGTCTGATCTCAAGAGCGCAT 905
Query 898 CAACTTGTAATGGAAGGCTATAATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 CAACTTGTAATGGAAGGCTATAATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGT 965
Query 958 GCACCAAACTACTGTTACAGATGTGGAAACATGGCAGCAATTCTTGAGATTGGAGAAAAG 1017
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 966 GCACCGAACTACTGTTACAGATGTGGAAACATGGCCGCAATTCTTGAGATTGGAGAAAAG 1025
Query 1018 ATGGAACAGAACTTCCTTCAGTTCGATCCAGCACCTAGACAGGTCGAACCCGATACCACC 1077
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1026 ATGGAACAGAACTTCCTTCAATTCGATCCAGCACCTAGACAAGTCGAACCCGATACCACG 1085
Query 1078 CGCAAGACCCCTGATTATTTTTTGTGATTTCCCTACCACTTCAtttttttttC-AAAGTT 1136
||||||||||||||||||||||||||||||| | || |||||| ||| ||||||
Sbjct 1086 CGCAAGACCCCTGATTATTTTTTGTGATTTC---A----TT--TTTTTTCTTCCAAAGTT 1136
Query 1137 TGTTTGTTGCTGTATCATTGTAGATGTGTCTCT---ATTTTATTTTGT----T-T-TA-- 1185
||||||||||||||||||||||||||||||| | ||||| |||| | | | ||
Sbjct 1137 TGTTTGTTGCTGTATCATTGTAGATGTGTCTGTTTTATTTTGTTTTTTCGAGTCTCTAGA 1196
Query 1186 TGGAATTTGATACCGAAGACGAAAAACCCATCAtttttttGTTGATGTTGATACTGAAAA 1245
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGGAATGTGATACCAAAGACGAAAAACCCATCATTTTTTTGTTGATGTTGATACTGAAAC 1256
Query 1246 AGGTTTGTAGAAGCCTCCTATTATAATAGAAAATAG-CTTTTGAT 1289
||||||||||||||||| | |||| ||||||||| | ||||||||
Sbjct 1257 AGGTTTGTAGAAGCCTCTTCTTATTATAGAAAAT-GTCTTTTGAT 1300
> AT1G10430.1 | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1:3428478-3430633
REVERSE LENGTH=1344
Length=1344
Score = 1103 bits (597), Expect = 0.0
Identities = 820/930 (88%), Gaps = 6/930 (1%)
Strand=Plus/Plus
Query 182 AGATGCCGTCAAACGGAGATCTCGACCGTCAGATCGAACAGCTTATGGAGTGTAAACCGT 241
|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 195 AGATGCCGTCGAACGGAGATCTGGACCGTCAGATCGAGCAGCTGATGGAGTGTAAACCGT 254
Query 242 T-GGGTGAAGCAGACGTGAAGATC-CTCTGCGATCAAGCCAAAGCGATTCTCGTTGAGGA 299
| | || || || |||| || | || ||||||||||| | |||||| || || |||||
Sbjct 255 TATCG-GAGGCGGATGTGAGGA-CGCTTTGCGATCAAGCGAGAGCGATCCTTGTCGAGGA 312
Query 300 ATATAATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGACAGTT 359
|||||||||||| ||||| |||||||| ||||| || ||||||||||| || || |||||
Sbjct 313 ATATAATGTTCAGCCGGTGAAGTGTCCTGTTACCGTTTGCGGCGATATTCACGGCCAGTT 372
Query 360 TTATGACCTAATTGAGCTTTTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTCTT 419
||||||||| |||||||| |||||||| ||||| || |||||||||||||| ||||||||
Sbjct 373 TTATGACCTTATTGAGCTCTTTCGTATCGGTGGCAACGCTCCTGATACTAACTACCTCTT 432
Query 420 CATGGGTGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTTTATTGGTGGC 479
|||||| || ||||||||||||||||||||||| ||||| ||||| ||| ||||||||||
Sbjct 433 CATGGGAGACTATGTAGATCGTGGCTACTATTCAGTAGAGACAGTTTCTCTATTGGTGGC 492
Query 480 ACTGAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGTCGTCA 539
||| || ||||| |||||||| |||||||| ||| | ||||||||||| |||||||| ||
Sbjct 493 ACTAAAAGTGCGATACAGGGATAGACTTACAATCTTACGAGGGAATCACGAGAGTCGGCA 552
Query 540 GATTACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAATGT 599
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 553 GATTACTCAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGT 612
Query 600 GTGGAAGTATTTTACGGACCTTTTCGATTATCTTCCTCTTACAGCACTCATAGAGAGTCA 659
|||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 613 CTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCA 672
Query 660 GGTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACCCTTGACAATATCCGAAG 719
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 673 GGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAG 732
Query 720 CTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCTGA 779
||||||||| ||||| |||||||||||||||||||| ||||| ||| || | ||||||||
Sbjct 733 CTTGGATCGGATACAGGAGGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGA 792
Query 780 TCCAGATGATCGTTGTGGATGGGGAATATCTCCCCGTGGTGCTGGTTACACGTTTGGACA 839
||| |||||||| |||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct 793 TCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGACA 852
Query 840 GGACATTGCTA-CTCAGTTTAATCATAACAATGGACTGAGTCTGATATCAAGAGCGCATC 898
||| || || | |||| |||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 853 GGATATCGC-AGCTCAATTTAATCACAACAATGGACTAAGTCTCATATCAAGAGCGCATC 911
Query 899 AACTTGTAATGGAAGGCTATAATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGTG 958
||||||| |||||||| | ||| ||||||||||| ||||| || ||||| ||||||||||
Sbjct 912 AACTTGTCATGGAAGGTTTTAACTGGTGTCAGGATAAGAATGTGGTGACTGTGTTTAGTG 971
Query 959 CACCAAACTACTGTTACAGATGTGGAAACATGGCAGCAATTCTTGAGATTGGAGAAAAGA 1018
|||||||||| || ||| | |||||||||||||| || ||||| ||||| ||||| || |
Sbjct 972 CACCAAACTATTGCTACCGGTGTGGAAACATGGCTGCCATTCTAGAGATAGGAGAGAACA 1031
Query 1019 TGGAACAGAACTTCCTTCAGTTCGATCCAGCACCTAGACAGGTCGAACCCGATACCACCC 1078
|||| || |||||||| |||||||||||||| ||| |||| || ||||| ||||| || |
Sbjct 1032 TGGAGCAAAACTTCCTCCAGTTCGATCCAGCTCCTCGACAAGTTGAACCTGATACTACTC 1091
Query 1079 GCAAGACCCCTGATTATTTTTTGTGATTTC 1108
| ||||||||||||||||||||||||||||
Sbjct 1092 GGAAGACCCCTGATTATTTTTTGTGATTTC 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63403288335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5