BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475340
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59740.1 | Symbols: | Major facilitator superfamily protein... 3197 0.0
> AT1G59740.1 | Symbols: | Major facilitator superfamily protein
| chr1:21968071-21972411 FORWARD LENGTH=2031
Length=2031
Score = 3197 bits (1731), Expect = 0.0
Identities = 1934/2030 (95%), Gaps = 21/2030 (1%)
Strand=Plus/Plus
Query 1 TTGCCCTCAAAGATAGTAAAGACAAGCCAAATAATAATCAAtctttcttctatcttcttt 60
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1 TTGTCCTCAAAGATAGTAAAG--AAGCCAAATAATAACCAATCTTTCTTCTATCTTCTCT 58
Query 61 ctctcaatatc--tctct--ctctc---tctctctGGCACAACTAAAGTAGAGATATAGA 113
| ||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 59 CCCTCAATATCTTTCTCTCACTCTCTGATCTCCCTGGCACAACTAAAGTAGAGATATAGA 118
Query 114 GAGAGA--AACTTTGGATTTTTTGTGGGTTTGTGAGAGATGGCAGAGATAAACAAACAAA 171
|||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 119 GAGAGAGGAACTTTGGATTGTTTGTGTCTTTGTGACAGATGGCAGAGATAAACAAACAAA 178
Query 172 GCAACAAATGGGAACAAGAAGTGGTTAGTAATGAAATGAATAATTGGGAATTGGCTGAAG 231
||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 179 GCAACAAATGGGAACAAGAAGAGGTTAGTAATG-AA--AATAATTGGGAATTGGCTGAAG 235
Query 232 AAGAAAGTGTTGACTGGAGAGGGAGACCTTCCAACCCTAACAAACATGGTGGAATGAGAG 291
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 236 AAGAAAGTGTTGACTGGAGAGGGAGACCTTCCAACCCTAACAAGCATGGTGGAATGAGAG 295
Query 292 CTGCTCTCTTTGTTCTTGGACTACAAGCCTTTGAGATAATGGGGATAGCAGCAGTAGGGA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGCTCTCTTTGTTCTTGGACTACAAGCCTTTGAGATAATGGGGATAGCAGCAGTAGGGA 355
Query 352 ACAACCTTATAACTTATGTAATAAACGAAATGCATTTCCCCTTGTCTAAAGCGGCCAATA 411
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 356 ACAACCTTATAACTTATGTAATAAACGAAATGCATTTCCCTTTGTCTAAAGCGGCCAATA 415
Query 412 TTGTTACCAACTTTGTCGGTACCATCTTTATCTTTGCCCTCCTCGGCGGCTACCTCTCGG 471
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 416 TTGTTACCAACTTTGTCGGTACCATCTTTATCTTTGCCCTTCTCGGCGGCTATCTCTCGG 475
Query 472 ATGCCTTTTTAGGCAGCTTCTGGACCATCATCATCTTCGGCTTCGTCGAGCTTTCTGGTT 531
| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 476 ACGCCTTTCTAGGCAGCTTCTGGACCATTATCATATTCGGCTTCGTCGAGCTTTCTGGTT 535
Query 532 TCATACTACTGTCAGTACAAGCACATTTGCCTCAACTAAAGCCACCAAAGTGTAACCCAT 591
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 536 TCATACTACTATCAGTACAAGCACATTTACCCCAACTAAAGCCACCAAAATGTAACCCAT 595
Query 592 TGATAGACCAAGCATGTGAAGAAGCCAAAGGTTTAAAGGCAATGATCTTCTTCATGGCAC 651
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 TGATAGACCAAACATGTGAAGAAGCCAAAGGTTTCAAGGCAATGATCTTCTTCATGGCAC 655
Query 652 TTTACTTGGTGGCGTTAGGAAGTGGCTGCGTGAAACCAAACATGATAGCTCACGGTGCGG 711
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TCTACTTGGTGGCTTTAGGAAGTGGCTGCGTGAAACCAAACATGATAGCTCACGGTGCGG 715
Query 712 ACCAGTTCTCTCAGTCGCATCCTAAACAATCTAAAAGACTCTCATCTTACTTCAATGCCG 771
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 716 ACCAGTTCTCTCAGTCGCATCCTAAACAATCTAAAAGACTGTCATCTTACTTCAATGCTG 775
Query 772 CCTATTTCGCATTCTCAATGGGCGAGCTTATCGCTCTAACTCTCCTTGTTTGGGTTCAAA 831
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CCTATTTTGCATTCTCAATGGGCGAGCTTATCGCTCTAACTCTCCTTGTTTGGGTTCAAA 835
Query 832 CTCATTCGGGAATGGACGTTGGGTTCGGAGTCTCTGCTGCAGCAATGACTATGGGCCTCA 891
|||||||||| |||||| |||| || ||||||||||||||||| |||||||||||| |||
Sbjct 836 CTCATTCGGGCATGGACATTGGATTTGGAGTCTCTGCTGCAGCGATGACTATGGGCATCA 895
Query 892 TTAGCTTAGTCTCCGGTACTATGTATTTTCGTAACAAACGTCCACGTCGAAGCATCTTCA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTAGCTTAGTCTCCGGTACTATGTATTTTCGTAACAAACGTCCACGTCGAAGCATCTTCA 955
Query 952 CTCCCATTGCCCAAGTTGTTGTGGCTGCCATATTAAAAAGAAAGCTTGTGTCTCCCTCTG 1011
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 956 CTCCCATTGCCCATGTTATTGTGGCTGCCATATTAAAAAGAAAGCTTGCGTCTCCCTCTG 1015
Query 1012 ACCCAAGAATGCTTCATGGAGACCACCATGTCGCAAACGACGTCGTACCCTCCTCCACTT 1071
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACCCAAGAATGCTCCATGGAGACCACCATGTCGCAAACGACGTCGTACCCTCCTCCACTT 1075
Query 1072 TACCATACACTCCTCGTTTCAGGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAA 1131
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TACCACACACTCCTCGTTTCAGGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAA 1135
Query 1132 ACACCAAGGAGAGTCCGTGGAGGCTATGCACAGTAACACAAGTAGAGCAAGTCAAAACCC 1191
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1136 ACACAAAGGAGAGTCCATGGAGGCTATGCACAGTAACACAAGTAGAGCAAGTAAAAACCC 1195
Query 1192 TAATCTCACTTGTCCCAATCTTCGCAAGCACCATCGTCTTCAACACAATCTTGGCTCAGC 1251
|||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||
Sbjct 1196 TAATCTCACTTGTCCCTATCTTTGCAAGCACCATAGTCTTCAACACCATCTTGGCACAGC 1255
Query 1252 TCCAAACGTTTTCGGTCCAACAAGGAAGTTCCATGAACACTCGTCTTTCAAATTCCTTCC 1311
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 TCCAAACGTTTTCAGTCCAACAAGGAAGTTCCATGAACACTCGTCTCTCAAATTCCTTCC 1315
Query 1312 ACATTCCTCCGGCTTCACTCCAGGCCATCCCTTACATGATGCTCATATTCCTCGTCCCTC 1371
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1316 ACATCCCTCCGGCTTCACTCCAGGCCATCCCTTACATAATGCTCATATTCCTTGTCCCTC 1375
Query 1372 TCTACGACTCTTTCTTAGTCCCTTTTGCACGTAAGCTCACAGGACATAACTCAGGTATTC 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TCTACGACTCTTTCTTAGTCCCTTTTGCACGTAAGCTCACAGGACATAACTCAGGTATTC 1435
Query 1432 CTCCATTGACTCGGATAGGAATCGGACTCTTCCTCTCCACTTTCTCCATGGTTTCAGCTG 1491
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1436 CTCCATTGACTCGGATAGGAATTGGACTCTTCCTCTCCACTTTCTCCATGGTTTCAGCTG 1495
Query 1492 CCATGCTCGAGAAGAAACGTAGAGACTCTTCAGTTCTTGACGGTAGAATCTTGAGTATCT 1551
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1496 CCATGCTCGAGAAGAAACGTAGAGACTCTTCGGTTCTTGACGGTAGAATCTTGAGTATCT 1555
Query 1552 TCTGGATCACGCCACAGTTCTTGATCTTTGGGGTCTCCGAGATGTTTACAGCTGTTGGAT 1611
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1556 TCTGGATCACGCCACAGTTCTTGATCTTTGGTATCTCCGAGATGTTTACAGCTGTTGGAT 1615
Query 1612 TAATCGAGTTCTTTTACAAGCAATCTGCAAAGGGCATGGAATCATTCTTGATGGCATTGA 1671
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TAATCGAGTTTTTTTACAAGCAATCTGCAAAGGGCATGGAATCATTCTTGATGGCATTGA 1675
Query 1672 CATATTGTTCCTACTCCTTTGGGTTTTACTTCAGCTCGGTGCTCGTTTCGGTCGTAAACA 1731
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CTTATTGTTCCTACTCCTTTGGGTTTTACTTCAGCTCGGTGCTCGTTTCGGTCGTAAACA 1735
Query 1732 AGATCACTTCGACGTCGGTCGACTCTAAAGGGTGGCTCGGAGAGAACGATCTGAATAAGG 1791
|||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1736 AGATCACTTCCACGTCAGTCGACTCTAAAGGGTGGCTCGGGGAGAACGACCTAAATAAGG 1795
Query 1792 ACAGGCTCGATCTGTTTTATTGGCTTTTAGCGGTTCTTAGTCTCTTGAACTTTCTTAGCT 1851
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 ACAGGCTCGATCTATTTTACTGGCTTTTAGCGGTTCTTAGTCTCTTGAACTTTCTTAGCT 1855
Query 1852 ATCTCTTTTGGTCTCGTTGGAACATTAAGTCTTCGAGAAGCAACAACACTAACGTGGTGG 1911
|||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 1856 ATCTCTTTTGGTCTCGTTGGAACATTAAGTCTTCGAGACGCAACAACACTAATGTTGTGG 1915
Query 1912 GAGAT-ATGAACATTTAGCTTGATGCATATAAAA-TGTACAATAAATATTATATCACCTA 1969
| ||| | ||||||||||||||||||||| |||| ||||||||| |||| ||||||||||
Sbjct 1916 GTGATGA-GAACATTTAGCTTGATGCATAAAAAAATGTACAATACATATAATATCACCTA 1974
Query 1970 TTAACATGCATGCATCTCCAGCATATAATTAATATAAATAAATTGTTGTA 2019
||||||||||| | || | ||||||||||||||||||||||| || ||||
Sbjct 1975 TTAACATGCAT-C-TC-C-AGCATATAATTAATATAAATAAACTGGTGTA 2020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100049686185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5