BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475343
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-l... 2486 0.0
AT1G59710.1 | Symbols: | Protein of unknown function (DUF569) ... 547 1e-154
AT1G09220.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 54.7 3e-06
> AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21939752-21941784 REVERSE LENGTH=2033
Length=2033
Score = 2486 bits (1346), Expect = 0.0
Identities = 1526/1613 (95%), Gaps = 11/1613 (1%)
Strand=Plus/Plus
Query 4 TTTCCCCTACAACAACTA-AACTTATTATCATCCAATGTCTATCAGTCTTCTGCTCCACC 62
|||| ||| ||||||||| ||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 23 TTTCACCTCCAACAACTATAACTTATTACCATCCAATGTCTATCGGTCTTCTGGTCCACC 82
Query 63 CATTATCTCCTCATATCCAACCGGCTAA-TTCTCCCTCAGCCTCCACCGCCGGTAACCAT 121
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 83 CATTATCTCCTCATATCCCACCGGC-AAGTTCTCCCTCAGCCTCCACCGCCGGTAACCAT 141
Query 122 CACCGACGTATTCTCTCCTTAGCAGAAACATGTTCAGACATGTCTCAGCTCAAGCAACTC 181
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CACCAACGTATTTTCTCCTTAGCAGAAACATGTTCAGACATGTCTCAGCTCAAGCAACTT 201
Query 182 CACGCCTTCACTCTCCGTACTACTTACCCTGATGAACCCGCAACTCTGTTTCTCTACGGC 241
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 202 CACGCCTTCACTCTCCGTACTACTTACCCTGAGGAACCCGCAACTCTGTTTCTCTACGGC 261
Query 242 AAAATCCTCCAGCTATCTTCCTCCTTCTCCGACGTCAATTACGCGTTCCGGGTTTTCGAC 301
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 AAAATCCTCCAGCTCTCTTCCTCCTTCTCCGACGTCAATTACGCGTTCCGGGTTTTCGAC 321
Query 302 TCCATTGAAAACCATAGCTCCTTT-ATGTGGAACACTCTTATAAGAGCATGTGCTCATGA 360
||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 322 TCCATCGAAAACCATAGCT-CTTTCATGTGGAACACTCTTATAAGAGCATGTGCTCATGA 380
Query 361 TGTTTCAAGGAAAGAAGAAGCCTTTCTGCTGTACCGGAAAATGTTAGAGAGAGGTGAATC 420
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 381 TGTTTCAAGGAAAGAAGAAGCCTTTATGCTTTACCGGAAAATGTTAGAGAGAGGTGAATC 440
Query 421 GGCACCGGATAAGCATACGTTTCCGTTTGTTTTGAAAGCTTGCGCTTATATATTCGGGTT 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 441 TTCACCGGATAAGCATACGTTTCCGTTTGTATTGAAAGCTTGCGCTTATATATTCGGGTT 500
Query 481 ATCGGAAGGGAAGCAAGTTCATTGTCAGGTTGTCAAACATGGGTTTAGTGGAGATGTGTA 540
|| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 501 CTCCGAAGGGAAGCAAGTTCATTGTCAGATTGTGAAACATGGGTTTGGTGGAGATGTGTA 560
Query 541 TGTGAACAATGGTTTGATTCATTTTTATGGATCTTGTGGATGTTTGGATTTAGCACGGAA 600
||| || ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 561 TGTTAATAATGGTTTGATTCATTTGTATGGGTCTTGTGGGTGTTTGGATTTAGCACGGAA 620
Query 601 AGTGTTTGATGAAATGCCTGAGAGAAGTCTTGTTTCGTGGAATTCGATGATTGATGCTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 621 AGTGTTTGATGAAATGCCTGAGAGAAGTCTTGTTTCGTGGAATTCGATGATCGATGCTCT 680
Query 661 GGTTCGGGTTGGGGAGTATGATTCTGCGTTACAATTGTTTAGAGATATGCAGAAATCGTT 720
||||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct 681 GGTTCGGTTTGGGGAGTATGATTCTGCGTTACAACTGTTTAGAGAGATGCAGAGATCGTT 740
Query 721 TGAACCAGATGGTTATACGATGCAGAGTGTTTTGAGTGCGTGTGCTGGTCTTGGATCTTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGAACCAGATGGTTATACGATGCAGAGTGTTTTGAGTGCGTGTGCTGGTCTTGGATCTTT 800
Query 781 GTCATTAGGTACTTGGGCACATGTGTTTCTGTTGCGAAATTGTGATGTCGATGTTGCTAT 840
|||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 801 GTCACTAGGTACTTGGGCACATGCGTTTCTGCTGCGAAAATGTGATGTCGATGTTGCTAT 860
Query 841 GGATGTTCTGATTAAGAACTCGTTGATTGAAATGTATTGCAAATGCGGGTCGTTGAGAAT 900
||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 861 GGATGTTTTGGTTAAGAACTCGTTGATCGAAATGTATTGCAAATGCGGGTCGTTGAGAAT 920
Query 901 GGCTGAGCAAGTGTTTCAGGGAATGCGAAAACGTGACTTAGCTTCATGGAACGCAATGAT 960
||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 921 GGCTGAGCAAGTGTTTCAGGGGATGCAAAAACGTGACTTAGCTTCATGGAATGCAATGAT 980
Query 961 TCTAGGGTTTGCTACACACGGAAAAGCTGAGGAAGCTATGAATTGCTTCGACTGTATGGT 1020
|||||||||||||||||| |||| |||||||||||| ||||||| ||||||| |||||||
Sbjct 981 TCTAGGGTTTGCTACACATGGAAGAGCTGAGGAAGCCATGAATTTCTTCGACCGTATGGT 1040
Query 1021 -GA-AAGAAGGCA-AGAATGTTAAACCGAACTCTGTCACGTTTGTTGCCCTCCTCATTGC 1077
|| || || | | ||||||||| ||||||||| ||||||||||||| | | ||||| ||
Sbjct 1041 GGATAA-AA-G-AGAGAATGTTAGACCGAACTCAGTCACGTTTGTTGGCTTGCTCATCGC 1097
Query 1078 CTGCAACCACCGAGGCATGGTAAACAAAGGGCGCCAGTATTTTGACATGATGGTCAGAGA 1137
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CTGCAACCACCGAGGCTTTGTAAACAAAGGGCGCCAGTATTTTGACATGATGGTCAGAGA 1157
Query 1138 ATATGGTATCGAACCTGCGTTGGAGCATTATGGTTGTATCATCGACCTTGTTGCTCGTGC 1197
||| | ||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||
Sbjct 1158 TTATTGCATCGAACCTGCGTTGGAGCATTACGGTTGCATCGTCGACCTTATTGCTCGTGC 1217
Query 1198 AGGCTACATTACTGAAGCTATTGACATGGTGATGAGCATGCCGATGAAACCAGATGCAGT 1257
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1218 AGGCTACATTACTGAAGCTATTGACATGGTAATGAGCATGCCAATGAAACCAGATGCAGT 1277
Query 1258 GATATGGAGAAGTCTCCTTGATGCTTGTTGCAAAAAAGGCGCTAGTGTGGAGCTAAGTGA 1317
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1278 GATATGGAGAAGTCTCCTTGATGCTTGTTGCAAAAAGGGTGCTAGTGTGGAGCTAAGTGA 1337
Query 1318 AGAAATTGCTAGAAATATTATCGGAACAATGGAAGATAACCAAAGCTCCAATAGTAACTG 1377
||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||
Sbjct 1338 AGAAATTGCTAGAAATATTATTGGAACAAAGGAAGATAACGAAAGCTCCAATGGTAACTG 1397
Query 1378 CAGTGGCGCATATGTACTGTTGTCTAGAGTTTATGCATCAGCTAGCCGGTGGAACGATGT 1437
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1398 CAGTGGTGCATATGTACTGTTGTCTAGAGTTTATGCATCAGCTAGCCGCTGGAACGATGT 1457
Query 1438 TGGAATCGTCAGAAAACTAATGAGTGACCATGGAATTAGAAAAGAGCCTGGATGCAGTTC 1497
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1458 TGGAATCGTTAGAAAACTAATGAGTGAACATGGAATTAGAAAAGAGCCTGGATGCAGTTC 1517
Query 1498 TATTGAGATAAATGGCATCTCCCACGAGTTTTTCGCAGGAGACACGTCGCATCCTCAGAC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 TATTGAGATAAATGGCATCTCCCACGAGTTTTTCGCAGGAGACACGTCGCATCCTCAGAC 1577
Query 1558 AAAACAGATATACCAACAGTTGAAAGTGATCGACGACAGGCTAAGATCAATTG 1610
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1578 CAAACAGATATACCAACAGTTGAAGGTGATCGACGACAGGCTAAGATCAATTG 1630
Score = 547 bits (296), Expect = 1e-154
Identities = 344/367 (94%), Gaps = 4/367 (1%)
Strand=Plus/Plus
Query 1610 GTGGATTCCACCAATGACGGTAGCAAAGAGTATTCCCTCCGGCTGCACAGTGAGAGACTT 1669
|||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1663 GTGGATGCCACCAATGATGGTAGCAAAGAGTATTCCCTTAGGCTGCACAGTGAAAGACTT 1722
Query 1670 GCCATTGCTTTTGGTCTGATAAGCTTACCACCTCAGACTCCAATCCGTATATTCAAGAAT 1729
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1723 GCCATTGCTTTTGGTCTGATAAACTTACCACCTCAGACTCCAATCCGTATATTCAAGAAT 1782
Query 1730 CTACGTGTCTGCAGCGATTGCCATGAAGTTACTAAACTGATATCAAAAGTCTTCAACACT 1789
||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1783 CTACGTGTCTGCAACGATTGCCACGAGGTTACTAAACTGATCTCAAAAGTCTTCAACACT 1842
Query 1790 GAGATCATCGTGAGAGACCGTGTTCGGTTCCATCATTTCAAAGACGGATCCTGCTCTTGT 1849
||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1843 GAGATCATCGTGAGAGATCGTGTTCGTTTCCATCACTTCAAAGATGGATCCTGCTCTTGT 1902
Query 1850 TTAGACTACTGGTAGCTAAAAC----CTAGTCGCAGTAATTGAAAGAGATTGAGCATTAG 1905
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1903 TTAGACTACTGGTAGCAAAAAAAAAACTAGTCGCAGTAATTGAAAGAGATTGAGCATTAG 1962
Query 1906 AGTGGGACAAAAGGGAAAGAATGGTATATCTAAATCATAAGTTTGGTAATCAAGCAGTAT 1965
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1963 AGTTGGACAAAAGGGAAAGAATGGTATCTCTAAATCATAAGTTTGGTAATCAAGCAGTAT 2022
Query 1966 CTGTAAG 1972
|| ||||
Sbjct 2023 CTCTAAG 2029
> AT1G59710.1 | Symbols: | Protein of unknown function (DUF569)
| chr1:21938367-21940184 FORWARD LENGTH=1670
Length=1670
Score = 547 bits (296), Expect = 1e-154
Identities = 344/367 (94%), Gaps = 4/367 (1%)
Strand=Plus/Minus
Query 1610 GTGGATTCCACCAATGACGGTAGCAAAGAGTATTCCCTCCGGCTGCACAGTGAGAGACTT 1669
|||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1608 GTGGATGCCACCAATGATGGTAGCAAAGAGTATTCCCTTAGGCTGCACAGTGAAAGACTT 1549
Query 1670 GCCATTGCTTTTGGTCTGATAAGCTTACCACCTCAGACTCCAATCCGTATATTCAAGAAT 1729
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1548 GCCATTGCTTTTGGTCTGATAAACTTACCACCTCAGACTCCAATCCGTATATTCAAGAAT 1489
Query 1730 CTACGTGTCTGCAGCGATTGCCATGAAGTTACTAAACTGATATCAAAAGTCTTCAACACT 1789
||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1488 CTACGTGTCTGCAACGATTGCCACGAGGTTACTAAACTGATCTCAAAAGTCTTCAACACT 1429
Query 1790 GAGATCATCGTGAGAGACCGTGTTCGGTTCCATCATTTCAAAGACGGATCCTGCTCTTGT 1849
||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1428 GAGATCATCGTGAGAGATCGTGTTCGTTTCCATCACTTCAAAGATGGATCCTGCTCTTGT 1369
Query 1850 TTAGACTACTGGTAGCTAAAAC----CTAGTCGCAGTAATTGAAAGAGATTGAGCATTAG 1905
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1368 TTAGACTACTGGTAGCAAAAAAAAAACTAGTCGCAGTAATTGAAAGAGATTGAGCATTAG 1309
Query 1906 AGTGGGACAAAAGGGAAAGAATGGTATATCTAAATCATAAGTTTGGTAATCAAGCAGTAT 1965
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1308 AGTTGGACAAAAGGGAAAGAATGGTATCTCTAAATCATAAGTTTGGTAATCAAGCAGTAT 1249
Query 1966 CTGTAAG 1972
|| ||||
Sbjct 1248 CTCTAAG 1242
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1583 GTGATCGACGACAGGCTAAGATCAATTG 1610
||||||||||||||||||||||||||||
Sbjct 1668 GTGATCGACGACAGGCTAAGATCAATTG 1641
> AT1G09220.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:2977792-2979466 REVERSE LENGTH=1675
Length=1675
Score = 54.7 bits (29), Expect = 3e-06
Identities = 46/54 (85%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 599 AAAGTGTTTGATGAAATGCCTGAGAGAAGTCTTGTTTCGTGGAAT-TCGATGAT 651
|||||||||||||||||||||||||||| || || | |||||| | ||||||
Sbjct 535 AAAGTGTTTGATGAAATGCCTGAGAGAAATCCGGTAACTTGGAATGT-GATGAT 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97690260570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5