BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475347
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59650.1 | Symbols: CW14 | Protein of unknown function (DUF1... 3000 0.0
AT1G10410.1 | Symbols: | Protein of unknown function (DUF1336)... 974 0.0
> AT1G59650.1 | Symbols: CW14 | Protein of unknown function (DUF1336)
| chr1:21919745-21922923 FORWARD LENGTH=2086
Length=2086
Score = 3000 bits (1624), Expect = 0.0
Identities = 1927/2066 (93%), Gaps = 50/2066 (2%)
Strand=Plus/Plus
Query 3 GaaaaaaaGCTTCTTCTTCACCAAATTA-TTTGTCTAGTTGTCTGTGTCTCATTTACCAT 61
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 50 GAAAAAAAGCTTCTTCTTCACCAAA-CAGTTTGTCTAGTTGTCTGTGTCTCATTTACCAT 108
Query 62 A-TTTCTCTCTAAATATTTCCCATTACTGGATTTGAAGATCGTGTCTGGCAGATTCTATC 120
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 109 ATTTTCTCTCTAAATTTTTCCCATTACTGGATTTGAAGATCGTGTCTGGCAGATTTTATC 168
Query 121 TGA-TTTCTGATCagaagaagaagagagaagaaAAAGGAAACAAC-TTTTT-CT--CTTT 175
||| ||||||||| ||||||||| ||||||||||||| ||||| | ||||
Sbjct 169 TGATTTTCTGATC---------AGAGAGAAGTAAAAGGAAACAACTTTTTTGTTAGCTTT 219
Query 176 CTCTCTCTACAAGTTCTGGGTTTTTAAGAGAAAGAGATCAAGGAGACAGCTTtctctctc 235
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 220 CTCTCTCTACAAGTTTTGGGTTTTTAAGAGAAAGAGATAAAGGAGACAGCTTTCTCTCTC 279
Query 236 tctctatctctAAAAGTTCTGGGTTTAGAAAGAGA----TCTTATATGTTGAATTTGTGA 291
| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 280 TGTCTCTCTCTAAAAGTTCTGGGTTTAGAAAGAGATCTTTCTTATATGTTGAATTTGTGA 339
Query 292 TCagagagagaagagagagagaTGGGAGGTTGCGTGTCAACGCCTAAGAGCTGTGTAGGA 351
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TC----AGAG--GTGAGAGAGATGGGAGGTTGCGTGTCAACGCCTAAGAGCTGTGTAGGA 393
Query 352 GGTAAAATAAGGTCAAGCAAAAGGAGAAAGACTCGGACAAGACGAAAGATTCAGAAGAAG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GGTAAAATAAGGTCAAGCAAAAGGAGAAAGACTCGGACAAGACGAAAGATTCAGAAGAAG 453
Query 412 AGAGTTGTTTCTTCTTCTCGCTTATCTGACGGATCTTTCGATAATAATCACACTTTCAGA 471
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 454 AGAGTTGTTTCTTCTTCTCGCTTATCTGACGGATCTTTCGATAATAATCCCACTTTCAGA 513
Query 472 GCAAGTGTTGATGAAGCATGGTTTGATTCCAATCTCGCCTTTGAAACCGATTGTGATGAT 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GCAAGTGTTGATGAAGCATGGTTTGATTCCAATCTCGCCTTTGAAACCGATTGTGATGAT 573
Query 532 GATTTTCACAGTGTTCAGGAAGATATTTTGTCAGTAAACGGAGGTGAGCGTATCTCAGTC 591
|| ||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 574 GACTTTCATAGTGTTCAGGAAGATACGTTGTCAGTGAACGGATGTGAGCGTATCTCAGTA 633
Query 592 TCGAGTATGTCATCTGTTAGAGACTCTAACCTTGGTGGTTCCGCTCGGAATTCTCTAAGC 651
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TCGAGTATGTCATCTGTTAAAGACTCTAACCTTGGTGGTTCCGCTCGGAATTCTCTAAGC 693
Query 652 GATGTCATTTCACAATCAAAAGCAGAGAGTGCTTTGATTGACGCTAAGCAGCCTGTTTTT 711
|||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 694 GATGTCATCTCACAATCAAAATCAGAGAGTGCTTTGATTGACACTAAGCAGGCTGTTTTC 753
Query 712 ATTGACGAGATATCTTCAAATGCTGGTGATAGCTCTAGA-AAAGATGAAGGATTGTTGGA 770
|| |||||||||||||||||||||| || |||||||| | ||||||||||| ||||||||
Sbjct 754 ATCGACGAGATATCTTCAAATGCTGATGGTAGCTCTA-ATAAAGATGAAGGGTTGTTGGA 812
Query 771 AAACTGCGGGATTCTTCCGAGCAATTGTTTGCCATGTCTTAATTTAACTGTTCACT-CTA 829
||||||||||||||||||||| ||||||||||| |||||||||| |||||||| || |||
Sbjct 813 AAACTGCGGGATTCTTCCGAGTAATTGTTTGCCTTGTCTTAATTCAACTGTTC-CTTCTA 871
Query 830 TTGAAAAGAGAAGGTCTTTAAGCTCTAGCCCTCCGAGTACGAGGAAAAAAGCTGCGCTTA 889
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 872 TTGAAAAGAGAAGGTCTTTAAGCTCTAGCCCTCCAAGTACGAGGAAAAAAGCTGCGGTTA 931
Query 890 AACTATCTTTCAAGTGGAGAGAAGGGCACGCTACCGGTCCTTTATTTTCTACAAAAATGC 949
||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||
Sbjct 932 AACTATCTTTCAAGTGGAGAGAAGGGCACCCTACTGGTCCTTTATTTTCTACAACAATGC 991
Query 950 AGTTGCAGAGACCGATGGCAGGTTCTCAGGTTCCGTTTTGTCCGCTCGAAAAGCAAATGT 1009
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 992 AGTTGCAGAGACCGATGGCAGGTTCTCAGGTTCCGTTTTGTCCACTCGAAAAGAAAATGT 1051
Query 1010 TCGATTCTTGGTCAATTATTGAGCCAGGTAGTTTCCGGGTTCGTAGCAAAACTTATTTCA 1069
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1052 TTGATTCTTGGTCAATTATTGAGCCTGGTAGTTTCCGGGTTCGTAGCAAAACTTATTTCA 1111
Query 1070 GAGAAAAGAAGAAAGAGTTTGCACCAAACTATGCTGCATATAATCCATTTGGTGTCGATG 1129
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GAGATAAGAAGAAAGAGCTTGCACCAAACTATGCTGCATATAATCCATTTGGTGTCGATG 1171
Query 1130 TATTTTTATCTCAACGTAAAGTAAACCATATAGCGCAATACGTGGAGCTTCCTATTGTTA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1172 TATTTTTATCTCAACGTAAAGTAAACCATATAGCGCAATACGTGGAGCTTCCTGTTGTTA 1231
Query 1190 CCACCACCCCGACCAAGCTCCCATCAATCCTTGTTGTAAATGTTCAGATTCCATTGTATC 1249
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 CTACCACCCCGACTAAGCTCCCATCAATCCTTGTTGTAAATGTTCAGATTCCATTGTATC 1291
Query 1250 CAGCTGCAATTTTTCAAGGTGAAACTGATGGAGAAGGAATGAATTTTGTTTTATACTTTA 1309
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1292 CAGCTGCAATTTTTCATGGTGAAACTGATGGAGAAGGAATGAATTTCGTTTTATACTTTA 1351
Query 1310 AACTTTCGGATAATTATTTAAAGGAGCTTCCACCTCATTTTCAAGAAAGCATTCAGAGAT 1369
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1352 AACTTTCGGATAACTATTTAAAGGAGCTTCCACCACATTTTCAAGAAAGCATTCAGAGAT 1411
Query 1370 TACTAGATGATGAGGTTGAGAAAGTTAGAGGCTTTACCA-TGGATACAAATGTACCCTTT 1428
||||||||||||||||||||||||||||||||| || | || | || ||||||||||||
Sbjct 1412 TACTAGATGATGAGGTTGAGAAAGTTAGAGGCTACACTACTG-ACACGAATGTACCCTTT 1470
Query 1429 AGAGAACGGTTAAAGATATTGGGTCGTGTTGCGAATGTAGATGATCTCCAATTGAATGGC 1488
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1471 AGAGAACGGTTAAAGATATTGGGTCGTGTTGCGAATGTAGACGATCTTCAGTTGAATGGT 1530
Query 1489 GCAGAGAAAAAACTTATGAATGCTTATAACGAAAAACCTGTGCTTTCACGTCCACAGCAC 1548
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 GCAGAGAAAAAACTCATGAATGCTTATAACGAAAAACCTGTGCTTTCACGTCCACAGCAC 1590
Query 1549 GAGTTCTACTCGGGTGAAAATTACTTTGAGATTGATATCGATATGCATAGATTCAGTTAT 1608
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1591 GAGTTCTACTCGGGTGAAAATTACTTTGAGATTGATATTGATATGCATAGATTCAGTTAT 1650
Query 1609 ATATCGCGGAAAGGATTTGAAGCATTTTTAGACAGGCTCAAGCACTGTGTTCTTGATGTT 1668
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1651 ATATCGCGGAAAGGATTTGAAGCATTTTTAGACAGGCTAAAGAACTGTGTTCTTGATGTT 1710
Query 1669 GGACTCACAATTCAGGGGAATAAACCAGAGGAATTACCGGAGCAGATTCTGTGTTGTGTC 1728
|||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||
Sbjct 1711 GGACTCACAATTCAGGGGAATAAACCGGAGGAGTTACCGGAGCAGATTTTGTGTTGCATC 1770
Query 1729 CGGTTAAACGGGATTGATTACATGAATTATCATCAGTTAGCTCTTAGTCAAGAAGTCCTA 1788
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 CGGTTAAATGGGATTGATTACATGAATTATCATCAGTTAGCTCTTAGTCAAGAAGTCCTA 1830
Query 1789 TGATAA-AAAGCAAA-GACCTCG-CCGGAAttttttgttgttgttgtttatcttcttttc 1845
||||| ||| |||| || | | || ||||||||||||||| ||||||||||||||
Sbjct 1831 TGATACTAAA-CAAAAGATAT-GACCTTT-TTTTTTGTTGTTGTTCTTTATCTTCTTTTC 1887
Query 1846 ttttgttCCTCAAGAACACAAAATCTAAGAGATTTTTCGGTTTGAAGAAGAACTCAATAA 1905
||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct 1888 TTTTGTTCCTCAAGAACACAAAATCTAAGAGATACATCGTTTTGAAGAAGAAGTCAATAA 1947
Query 1906 TGGAAGCATGAATATATAAACAATACATCATTCCGAAACATGATCATACCTCGGAGATTG 1965
||||||||||| |||||| | ||||||||||||||||| ||||||| |||||||||||
Sbjct 1948 TGGAAGCATGAGTATATACATGATACATCATTCCGAAACCTGATCATTTCTCGGAGATTG 2007
Query 1966 CCTACGACTCTGTACAGTGGCCAATATTTCGACTAGTGCTCATCATAAATATCATAACTG 2025
|||||||||||||||||||||||||||| | || | |||||||||||||||| |
Sbjct 2008 CCTACGACTCTGTACAGTGGCCAATATT--G-CT----C--ATCATAAATATCATAATTC 2058
Query 2026 AATGAGAAATCACACA-CAACAGTAG 2050
||||||||||||| || |||||||||
Sbjct 2059 AATGAGAAATCAC-CAACAACAGTAG 2083
> AT1G10410.1 | Symbols: | Protein of unknown function (DUF1336)
| chr1:3416680-3419639 REVERSE LENGTH=1995
Length=1995
Score = 974 bits (527), Expect = 0.0
Identities = 874/1038 (84%), Gaps = 38/1038 (4%)
Strand=Plus/Plus
Query 753 AGATGAAGGAT-TGTTGGAAAACTGCGGGATTCTT-CCGAGCAATTGTTTGCCATGTCTT 810
||||||||| | | |||||||||||| ||| |||| ||||| ||||||||||| |||||
Sbjct 801 AGATGAAGG-TCTCTTGGAAAACTGCAGGA-TCTTACCGAGTAATTGTTTGCCTTGTCTG 858
Query 811 AAT---TTAACTGTTCAC-TCTATTGAAAAGAGAAGGTCT-TTAAGCTCTAGCCCTCCGA 865
||| |||||||| | |||||||| |||||||||||| || |||||||||||||| |
Sbjct 859 AATACAACAACTGTTC-CTTCTATTGACAAGAGAAGGTCTCTT-AGCTCTAGCCCTCCCA 916
Query 866 GTACGAGGAAAAAAGC-TGCGCTTAAACTATCTT-TCAAGTGGAGAGAAGGGCACGCTAC 923
|| | ||||||||| | | | |||| ||| |||| | || ||||||||||| || ||| |
Sbjct 917 GTTCCAGGAAAAAATCAT-CTCTTAGACTTTCTTAT-AAATGGAGAGAAGGTCATGCTTC 974
Query 924 CGG-TCCTT-TATTTTCTACAAAAATGCAGTTGCAGAGACCGATGGCAGGTTCTCAGGTT 981
|| |||| | |||| | | ||||||||| || |||||||||| || ||||||||||||
Sbjct 975 AGGAGCCTTGT-TTTTGT-CGAAAATGCAGCTGAAGAGACCGATAGCGGGTTCTCAGGTT 1032
Query 982 CCGTTT-TGTCCGCTCGAAAAGCAAATGTTCGATTCTTGGTCAATTATTGAGCCAGGTAG 1040
|| ||| ||||| | || ||| ||||| |||||| |||||||| ||||| ||| |||
Sbjct 1033 CC-TTTCTGTCCAATTGATAAGAAAATGCTCGATTGTTGGTCAACCATTGATCCAAATAG 1091
Query 1041 TTTCCGGGTTCGTAGCAAAACTTATTTCAGAGAAAAGAAGAAAGAGTTTGCACCAAACTA 1100
||| ||||||||| ||||||| ||| |||| || |||||||||||||||||||| | | |
Sbjct 1092 TTTTCGGGTTCGTGGCAAAACATATCTCAGGGAGAAGAAGAAAGAGTTTGCACCTAGCCA 1151
Query 1101 TGCTGCATATAATCCATTTGGTGTCGATGTATTT-TTATCTCAACGTAAAGTAAACCATA 1159
|||||| || ||||| |||||||||||||| ||| |||| ||| ||| || |||||
Sbjct 1152 TGCTGCGTACAATCCTTTTGGTGTCGATGT-TTTCCTATCGGAACACAAAATACACCATG 1210
Query 1160 TAGCGCAATACGTGGAGCTTCCTATTGTTACCACCAC-CCCGACCAAGCTCCCATCAATC 1218
| || ||||| || | ||||| |||||| ||||| || || || |||||||| |||
Sbjct 1211 TTGCACAATATGTCAAACTTCC---TGTTACTACCACATCC-ACAAAACTCCCATCTATC 1266
Query 1219 CTTGTTGTAAATGTTCAGATTCCATTGTATCCAGCTGCAATTTTTCAAGGTGAAACTGAT 1278
||||||||||||||||||||||| || |||||| ||||||| |||||||||||| |||||
Sbjct 1267 CTTGTTGTAAATGTTCAGATTCCGTTATATCCAACTGCAATCTTTCAAGGTGAATCTGAT 1326
Query 1279 GGAGAAGGAATGAATTTTGTTTTATACTTTAAACTTTCGGATAATTATTTAAAGGAGCTT 1338
||||||||||||||| |||| |||||||| ||||| ||||||||||||| |||||| |||
Sbjct 1327 GGAGAAGGAATGAATATTGTATTATACTTCAAACTCTCGGATAATTATTCAAAGGAACTT 1386
Query 1339 CCACCT-CATTTTCAAGAAAGCATTCAGAGATTACTAGATGATGAGGTTGAGAAAGTTAG 1397
|| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1387 CC-GCTCCATTTTCAAGAAAGCATTCGGAGATTAATAGATGATGAGGTTGAGAAAGTTAA 1445
Query 1398 AGGCTTTACC-ATGGATACAAATGTACCCTTTAGAGAACGG-TTAAAGATATTGGGTCGT 1455
|||| || || ||||||||| | ||| |||||||| ||| || ||||||||||| |||
Sbjct 1446 AGGC-TTCCCTTTGGATACAACGGCACCTTTTAGAGAGCGGCTT-AAGATATTGGGACGT 1503
Query 1456 GTTGCGAATGTAGATGATCTCCAATTGAATGG-CGCAGAGAAAAAACTTATGAATGCTTA 1514
||||| || || ||||||||||| |||| ||| | | ||||||||||| ||| | |||||
Sbjct 1504 GTTGCAAACGTGGATGATCTCCATTTGAGTGGTC-CGGAGAAAAAACTGATGCAGGCTTA 1562
Query 1515 TAACGAAAAACCTGTGCTTTCACGTCCACAGCACGAGTTCTACTCGGGTGAAAATTACTT 1574
|||||| |||||||| ||||||||||| |||||||| ||||||| |||||| ||||||||
Sbjct 1563 TAACGAGAAACCTGTACTTTCACGTCCGCAGCACGAATTCTACTTGGGTGACAATTACTT 1622
Query 1575 TGAGATTGATATCGATATGCATAGATTCAGTTATATATCGCGGAAAGGATTTGAAGCATT 1634
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct 1623 TGAGATTGATATCGATATGCATAGATTCGGTTATATATCGCGGAAAGGGTTTGAAACATT 1682
Query 1635 TTTAGACAGGCTCAAGCA-CTGTGTTCTTGATGTTGGACTCACAATTCAGGGGAATAAAC 1693
||||||| |||||| | |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1683 CATAGACAGACTCAAG-ATCTGTGTTCTTGATGTTGGCCTCACAATTCAGGGGAACAAAC 1741
Query 1694 CAGAGGAATTACCGGAGCAGATTCTGTGTTGTGTCCGGTTAAACGGGATTGATTACATGA 1753
||||||| |||||||||||||||||||||| ||| || |||| |||||||||| |||||
Sbjct 1742 CAGAGGAGCTACCGGAGCAGATTCTGTGTTGCGTCAGGCTAAATGGGATTGATTTCATGA 1801
Query 1754 ATTATCATCAGTTAGCTC 1771
| |||||||| ||| |||
Sbjct 1802 ACTATCATCAATTAACTC 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101605903080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5