BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475354
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59590.1 | Symbols: ZCF37 | ZCF37 | chr1:21887752-21888792 F... 1541 0.0
> AT1G59590.1 | Symbols: ZCF37 | ZCF37 | chr1:21887752-21888792
FORWARD LENGTH=1041
Length=1041
Score = 1541 bits (834), Expect = 0.0
Identities = 959/1017 (94%), Gaps = 18/1017 (2%)
Strand=Plus/Plus
Query 1 AAAACAAATCCTCATTAACCaaaaaccaaaaaaaaaaaaCTTGGAACTCTCTGAATCTCA 60
|||||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||
Sbjct 1 AAAACAAATCTTCATTAACC-AAAACC-AAAAAAAAAAACTTGAAACTCTCTGAATCTCA 58
Query 61 CAAGAACATCT-CAAGATTAAAGAAACCATAAGATCATCGCT-GAAAGTAAAAATGGTGA 118
||||||||| | |||| ||||||||||| ||||||||| || | |||||||||||||||
Sbjct 59 CAAGAACAT-TGCAAG-GTAAAGAAACCACAAGATCATCACTCG-AAGTAAAAATGGTGA 115
Query 119 GCCCATTTAGATCTCCATGTTCTTCACCaaaaaaaTCAAGAAAAGCAAACAAGAACCCTT 178
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 116 GCCCATTTAGATCTCCATGTTCTTCACCCAAAAAATCAAGAAAAGCAAGCAAGAACCCTT 175
Query 179 ATTCAAATCGTGGACTTGACAAATTCTCTGAGCTTCTCTCAGAGCTCGACGAGAAGAGAC 238
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 176 ATTCAAATCGTGGACTTGATAAATTCTCTGAGCTTCTCTCCGAGCTAGACGAGAAGAGGC 235
Query 239 AAAGCATCTACTCGAAGAAGCTCGATTCCGGTGGTCCGCCTCTTGTTCGATTTGTATTCA 298
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 236 AAAGCATCTACTCGAAGAAGCTCGATTCCGGTGGCCCGCCTCTTGTTCGATTTGTGTTCA 295
Query 299 CAAGCTCCGGTGAGTGTGTCCCCGTTGTGATCAGATCATCTTATCTTCACAAGAAGAACA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CAAGCTCCGGTGAGTGTGTCCCCGTTGTGATCAGATCATCTTATCTTCACAAGAAGAACA 355
Query 359 AGAAGACGAAAGATGTTGTAGCTGATAAAGTCAAAACAGAAGTCAAAGAAGCGAAAACAG 418
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 356 AGAAGACGAAAGATGTTGTAGCTGATAAAGTCAAAACAGAAGTCAAGGAAGCAAAAACAG 415
Query 419 AGGAAATCAAGAACATAGAGCCTGAAACAGAGCAAAAACAGAGTTGTGTTATAAACGAGA 478
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 416 AGGAAATCAAGAACACAGAGCCTGAAACAGAGCAAAAACAGAGCTGTGTTATAAACGAGA 475
Query 479 ATTTAAAGAAGATCGCTAGCCCGAATCATTTCTTGCCTGTGACTATGATCTTGGTTCTTA 538
|| | |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 476 ATCTGAAGAAGATCGCTAGACCGGATCATTTCTTGCCTGTGACTGTGATCTTGGTTCTTG 535
Query 539 TCTTTTTGGTTTTCTTTGGAAGATCTGTTGCGATTATGTGTACTTGTATCGCTTGGTACT 598
| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 536 TGTTTTTGGCTTTCTTTGGAAGATCTGTAGCGATTATGTTTACTTGTATCGCTTGGTACT 595
Query 599 TGGTTCCAACGATTCAAGAACAGAGCGGAAACAGAGGATCATCACCGGCTTACGCGATGA 658
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 596 TGGTTCCAACGATTCAAGAACAGAGTGGAAACAGAGGATCATCACCGTCTTACGCGATGA 655
Query 659 AGAAGAAAGATTTCGCTAGGAAATTGAGTATTGAAAACAGAGCATCGTTTAATCCAAGAA 718
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 656 AGAAGAAAGATTTCGCTAGGAAATTGAGTATTGAAAACAGAACATCGTTTAATCCAAGAA 715
Query 719 CTGTTCGTGATAACTCTCCTCGCAAGTAGAAGAAGTTTCTTATTTTGGCTGCTCGTGAAG 778
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTGTTCGTGATCATTCTCCTCGCAAGTAGAAGAAGTTTCTTATTTTGGCTGCTCGTGAAA 775
Query 779 AAAACCGCGTGACCGAGC-AAACACttttttttctttgtcaaaagttttttggt-t-t-a 834
|||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| | | |
Sbjct 776 AAAACCGCGTGACCGAGCGAAA-ACTTTTTTT-CTTTGTCAAAAGTTTTTTGGTCTCTTA 833
Query 835 tttctttgttactttttgttt-attctctgtttcgttcatagttgttgaatttaGAGACA 893
|||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 834 TTTCTTCGTTACTTTTTGTTTTATTCTCTGTTTCGTTCATAGTTGTTAAATTTAGAGACA 893
Query 894 GCTGAATTAGCAGAAAAATGTGTAGCttttt-atatttttaggttttt---AATGTTTAT 949
||||||||||||||||| ||||||||||||| ||||| |||| ||||| |||||||||
Sbjct 894 GCTGAATTAGCAGAAAATTGTGTAGCTTTTTTATATTGTTAGTTTTTTTTTAATGTTTAT 953
Query 950 ACATGTATATAATGCAATTGGAGATGTTCTTGATAACATATGATCTATTGCAACCAT 1006
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 954 AGATGTATATAATGCAATTGGAGATGTTCTTGATTACATATGATCTATTGCAACCAT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5