BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475358
Length=429
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59530.1 | Symbols: ATBZIP4, bZIP4 | basic leucine-zipper 4 ... 538 2e-152
> AT1G59530.1 | Symbols: ATBZIP4, bZIP4 | basic leucine-zipper
4 | chr1:21868262-21868708 FORWARD LENGTH=447
Length=447
Score = 538 bits (291), Expect = 2e-152
Identities = 385/430 (90%), Gaps = 7/430 (2%)
Strand=Plus/Plus
Query 2 CGGTTCATATCTGCTTTGATGATCATGATACGATAACCGGTGATGAAATCACTGAAATAT 61
||||||||| |||| || | || ||| ||||||||||||||||||||||| ||| ||||
Sbjct 23 CGGTTCATAACTGC-TTCA--ATGATGCTACGATAACCGGTGATGAAATCATTGATATAT 79
Query 62 TGGCGTTTCTTCAATCAGACGAGTCGGGTATTCCAAGTGGTACAAACGAATTAGTACCGG 121
||||||||||||||||||||||||||| | |||||| |||| |||||| |||||||||
Sbjct 80 TGGCGTTTCTTCAATCAGACGAGTCGGACAATCCAAGCGGTATAAACGAGGTAGTACCGG 139
Query 122 TTGATGAGAAGAAGAGAAGACGGACGATATCAAACCGGGAATCGGCAAAGAGATCGAGGT 181
| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 140 TGGATGATAAGAAGAGAAGACGGACGATATCAAACCGGGAATCGGCCAAGAGATCGAGGA 199
Query 182 TGAAGAAGAAGAAACGTTTTGAAGAGTTAACCGAAGAAGTGAACCGGCTGAACCA-AAGG 240
|||| |||||||||||||||||||||||||| ||||| ||||||||| | ||| | |||
Sbjct 200 TGAAAAAGAAGAAACGTTTTGAAGAGTTAACTGAAGAGGTGAACCGGTTAAAC-ATAAGA 258
Query 241 AATGAGGAGTTGAAAAACCGGTTAGCTAATGTGGTTAGTTGTGGTAATTTCATATCTAGT 300
||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 259 AATCAGGAGCTGAAAAACCGGTTAGCTAATGTTGTTAGTTGTGGTAATTTTATATCTAGG 318
Query 301 GAGAATAACCGCTTAAAAACCGAATCGGTCTGCCTTGAAATTAGGCTTCTAGAGTTGTAC 360
||||||||||| || |||||||||||||| |||||||| || |||||| |||||||||||
Sbjct 319 GAGAATAACCGGTTGAAAACCGAATCGGTTTGCCTTGAGATAAGGCTTTTAGAGTTGTAC 378
Query 361 CGGTTTTTAGTGGCCATTCAATCGCCAATCTCAACTAGAGTAAATTACATCACAGA-GCT 419
|| |||||||||||||| ||||||||||||||||| || ||||||||||||||| | |||
Sbjct 379 CGTTTTTTAGTGGCCATGCAATCGCCAATCTCAACGAGTGTAAATTACATCACA-ACGCT 437
Query 420 CGAGATTTAA 429
||||||||||
Sbjct 438 CGAGATTTAA 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20358438345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5