BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475360
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59520.3 | Symbols: CW7 | CW7 | chr1:21861384-21866190 FORWA... 2085 0.0
> AT1G59520.3 | Symbols: CW7 | CW7 | chr1:21861384-21866190 FORWARD
LENGTH=1546
Length=1546
Score = 2085 bits (1129), Expect = 0.0
Identities = 1337/1431 (93%), Gaps = 39/1431 (3%)
Strand=Plus/Plus
Query 3 CGCTCCGATTGACGCAACACGCCAACATTTTGCCAACGCTAAAGCAAATCAGATCGACGA 62
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 CGCTCCGATTGACGCAACACGCCAAGATTTTGCCAACGCTAAAGCAAATCAGATCGAAGA 60
Query 63 TTTGTG-T-TC-TCT-T-T-T-A-T--C-TC--ACTC-GCAAAAATTAGAAA-CGAAGAA 107
|||||| | || ||| | | | | | | || | || |||||||||| ||| ||||||
Sbjct 61 TTTGTGCTCTCTTCTATCTCTCACTCGCATCGAATTCAGCAAAAATTA-AAATTGAAGAA 119
Query 108 CCAGTCAGAGATAGTGACACCAGaaaaaaaaCCCTATTCGATCACGAGATCGTAATCCAC 167
| ||||| ||||| | | || | |||||||||||||||||||||||||||||| |
Sbjct 120 CGAGTCAAAGATA--G--A-GAG-AGAAAAACCCTATTCGATCACGAGATCGTAAT---C 170
Query 168 GAAGAAGAATTTAGCAGAATCATCGGAGGGTAGaaaaaaaTGCTCAACGATGGAGAAG-A 226
| | | |||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 171 --A-ACGTTTTTAGCAGAATCATCGGAGGGTAG-AAAAAATGCTCAACGATGGCGAAGTA 226
Query 227 GACTCCTTCTAGACATGAGATTCTGAGTATGGTTAAGAAGCACTCAAAGTCATTAGGAAA 286
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 227 -ACTCCTTCTAGACATGAGATTCTGAGTATGGTGAAGAAGCACTCAAAGTCATTAGGAAA 285
Query 287 GACGTCTCTTGATGAGCAAGATGCGTCTGATGTAGAAATGGACTCTAATTTCTGGCATGG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GACGTCTCTTGATGAGCAAGATGCGTCTGATGTAGAAATGGACTCTAATTTCTGGCATGG 345
Query 347 TGTGTTTGATGTTTACTTCATTCGTTGCATGGAGTCAAGGAGGCGGCAAGACGATGATCT 406
|||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 346 TGTGTTTGATGTGTACTTTGTTCGTTGCATGGAGTCGAGGAGGCGACAAGACGATGATCT 405
Query 407 TCTGTTTTTTGTCAGGAAATTGAGCTGTAAGTCATATGGTTTGACTGAAAATGAAGAAGC 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 406 TCTGTTTTTTGTCAGGAAATTGAGCTGTAAGTCATATGGTTTGACTGAAAATGAGGATGC 465
Query 467 ACCGGCTCCTTACTTTGTGCGCAGGTGGGCACCTAAGTTGGATGAGCTGCTTGGTGAAAG 526
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 466 ACCAGCTCCTTACTTTGTACGCAGGTGGGCACCTAAGTTAGATGAGCTGCTTGGTGAAAG 525
Query 527 TCTGGCTGAAGTTGATTGGAGAAAATCATTTTATTTGAACATGATTGCTCACACATCATA 586
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 526 TCTGGCTGAAGTTGATTGGAGGAAATCATTTTATTTGAACATGATTGCCCACACATCGT- 584
Query 587 T-ACTGTTACAGTGGCTATTTGCAGTAATGAGGCCCTTAAGACGTACCAAGGAAGTAAAG 645
| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCACTGTTACTGTTGCGATTTGCAGTAATGAGGCCCTTAAGACGTACCAAGGAAGTAAAG 644
Query 646 ACACAAAACTCTCTCCTATATACAAGGTTGTAAAAACTGTATATGCATCACCTAGTCGTG 705
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ACACAAAACTATCTCCTATATACAAGGTTGTAAAAACTGTATATGCATCACCTAGTCGTG 704
Query 706 TTAATTTTCATCTGGACTCAAAAAAGG-AAGTGGAAACAACACCTGCCTACCCAGAAATT 764
|||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 705 TTAATTTTCATCTGGACTCAAAGAAGGCAA-TGGAAACAACACCTGCCTACCCAGAAATT 763
Query 765 TGTTTTGCCGTAGATGATTTTGACTCAACCTTTGATGCTGTGGTTCTGACAGAAAAAGAT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 764 TGTTTTGCCGTAGATGATTTTGACTCAACCTTTGATGCTGTGGTTCTGACAGATAAAGAT 823
Query 825 CATTGCTATTGCGTACTACTAAATTCTCACGATGGGGCAGCCTTTCCAAGTGCAACTGTT 884
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 824 CATTGCTATTGCGTACTACTTAATTCTCACGATGGGGCAGCCTTTCCAAGTGCAACTGTT 883
Query 885 AAAGATTCAATTGATTCTAATACGAATGCTGACCCTAGAAGTGTGAAAGATCCTAAGGTT 944
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 884 AAAGATTCGAGTGATTCTAATACGAATGCTGACCCTAGAACTGTGAAAGATCCTAAGGTT 943
Query 945 ACTCTGTTTTCTGGGTTTGTCAGCTATCAGATGGTTCGAGAAGCCTATGAAGGGGAGAGG 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 944 ACTCTGTTTTCTGGGTTTGTCAGCTATCAGATGGTTCGAGAAGCCTATGAAGGGGGGAGG 1003
Query 1005 AATCGGTTTGGAAGTCTCCTATCACTCGGTCATAATACAGGAAAAGCAGACAGACTTTAT 1064
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1004 AATCGGTTTGGAAGTCTCCTATCTCTCGGTCATATTACAGGAAAAGCAGACAGACTTTAT 1063
Query 1065 ATGAGAGGTCCAGGAGGACGTGGAGAAGTTGAAGTAGCTGTTTCTGGCGTTATAGATCAG 1124
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1064 ATGAGAGGCCCAGGAGGACGTGGAGAAGTTGAAGTAGCTGTTTCTGGCGTTGTAGATCAG 1123
Query 1125 AGCCAAGTAGTTTTAGGTCCTGTTTCACCAATGTCTTCAAAGAAGAGCATCGATCTCGGC 1184
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1124 AGCCAAGTAGTTTTAGGGCCTGTTTCACCTATGTCTTCAAAGAAGAGCATCGATCTCGGA 1183
Query 1185 TCCATTTTCCGTAAAGCAGCCTCTGTTGCATCTGTCGCAGCTAAACATGCAATAGCAGCT 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TCCATTTTCCGTAAAGCAGCCTCTGTTGCATCTGTCGCAGCTAAACATGCAATAGCAGCT 1243
Query 1245 GCAACCGCCTCATATGATGAAGACGAGATGTTCCCTCTTAAATGCTGCTTAATGTCCATC 1304
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 GCTACTGCCTCTTATGATGAAGACGAGATGTTCCCTCTTAAATGCTGCTTAATGTCCATT 1303
Query 1305 TCGTTACCGTGGGACACTATTGCTCATGATCTTTTATTCAAGGTACCATCTCCACCAGTA 1364
|| ||||| |||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 1304 TCATTACCATGGGACACTATTGCTCATGATCTTTTATTCAAGGCA--A-CTCCACCAGTC 1360
Query 1365 AACATGGAGTAGAACATTCTGGAATGAAGCGTAGGAAACAGAATTTT-TGT 1414
|||||||||||| ||| |||||||||||||||||||||||||| ||| |||
Sbjct 1361 AACATGGAGTAGCACACTCTGGAATGAAGCGTAGGAAACAGAAGTTTGTGT 1411
Score = 163 bits (88), Expect = 4e-39
Identities = 102/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1408 TTTTTGTACTCTGATGGAATATTCCTTTTGTGCTGTTACTTGACTAAGTGGTTTACCACA 1467
|||||||||| |||| |||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1433 TTTTTGTACTTTGATTGAATATTCCTTTTGTGATGTTACTCGACTATGTGGTTTACCACA 1492
Query 1468 ACCACTGTTATTACCTCAAGGAATAAATGAAAGTGAAGTTGTGATTTTG 1516
|||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1493 ACCACTGTTATTACCTCAAGGAATAAATGAAAGTAAAGTTGTGAATTTG 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74798812050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5