BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475362
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59510.1 | Symbols: CF9 | Carbohydrate-binding protein | chr... 1783 0.0
AT1G10150.1 | Symbols: | Carbohydrate-binding protein | chr1:3... 368 8e-101
> AT1G59510.1 | Symbols: CF9 | Carbohydrate-binding protein | chr1:21859595-21861076
FORWARD LENGTH=1482
Length=1482
Score = 1783 bits (965), Expect = 0.0
Identities = 1249/1379 (91%), Gaps = 48/1379 (3%)
Strand=Plus/Plus
Query 1 CACTTCTTGGTTCTACATTCATTCATGTCTCTACCCAAATCTATCTGGTAAATC-AAA-- 57
|||||||||||||||| |||||||||||||||| ||||||||||||||||| || |||
Sbjct 25 CACTTCTTGGTTCTACCTTCATTCATGTCTCTATCCAAATCTATCTGGTAACTCAAAATC 84
Query 58 AT-A--------A---AA-AATTTCACAATCCCCAATTCTCATATCATTACAATCCCTAG 104
|| | | || ||||||||||| ||| || | || || |||||||||||||
Sbjct 85 ATCACTTCTTCTACTCAACAATTTCACAAT-CCC-ATCCCCA-AT-TTTACAATCCCTAG 140
Query 105 ATCTCTCTCTGAGTC-CCAATTTGCTGTAGTTTTCATGGACCTTGTTCGATTGAGAGACA 163
||||| | || || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 141 ATCTC-C-CTCCCTCTTCAATTCGCTGTAGTTTTCATGGACCTTGTTCGATTGAGAGACA 198
Query 164 TAGGTTCAATTTCACCTCAGAGAAGAAGGAAATGGCTGATTCTATTAGCGGTTTTCGGTG 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TAGGTTCAATTTCACCTCAGAGAAGAAGGAAATGGCTGATTCTATTAGCGGTTTTCGGTG 258
Query 224 TTTCGGGTTATGGAGTTTACAGGGTTTACAATTCTGAATACATCACTAGGAAGACGAAGC 283
|||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 259 TTTCGGGTTACGGAGTTTACAGGGTTTACAATTCTCAATACATCGCTAAGAAGACGAAGC 318
Query 284 GTCTTATGAAGCTATTCGGAGGTATTGTTTCATTCGCCGAATTGGTAATCGATTCGGCGG 343
|||||||||| || ||| ||| |||||||||||||||||| |||| |||||||| ||||
Sbjct 319 GTCTTATGAAACTCTTCTCAGGCATTGTTTCATTCGCCGAAATGGTCATCGATTCCGCGG 378
Query 344 AGACGATAAGCATCGTTTCTCGGGATTTGAAAGAGTTTCTGGATTCGGATTCTGATGAGA 403
|||||||||| ||||||||||| ||||||||||||||||| || || |||| | || |
Sbjct 379 AGACGATAAGTATCGTTTCTCGAGATTTGAAAGAGTTTCTCGAATCAAATTCCCACGAAA 438
Query 404 TCCCTAATAGCTTGAAACAGCTCGCGAAGATTACTAAATCGAAAGAGTTCACTGATTCTT 463
|||||||||||||||||||||| |||| || || ||||| ||||||||||||||||||
Sbjct 439 TCCCTAATAGCTTGAAACAGCTATCGAAAATCACCAAATCAAAAGAGTTCACTGATTCTC 498
Query 464 TAGCTAGGGTTTCTGAAGCCGTGGCGATTGGGGTTTTCCGCGGGTATAATTTCGATCAGG 523
||||||||||||||||||| || |||||||| |||||||| |||||||| ||| | |
Sbjct 499 TAGCTAGGGTTTCTGAAGCTGTAGCGATTGGTGTTTTCCGTGGGTATAA-TTC---C--G 552
Query 524 AGTTGAAAAACGTCGAAAAAGAATCGAATTTGAGTGTAGTTGATAGAGTTTTCTCAGAGG 583
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 A--T-CCAAACGTCGAAAAAGAATCGAATTTGAGTGTAGTTGATAGAGTTTTCTCAGAGG 609
Query 584 AAGGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGAT 643
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 610 AAGGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGTTTTGCTAAGAATCTTGTTCTTGGAT 669
Query 644 TTTACTCTGGTGAGATTGAGATTG--A-TGAT--T-CTTCAAAACCTAGATGGATGAATT 697
|||||||||||||||||||||||| | |||| | ||| ||||||||||||||||||||
Sbjct 670 TTTACTCTGGTGAGATTGAGATTGGTAGTGATGATTCTTTAAAACCTAGATGGATGAATT 729
Query 698 TGTTTAGTGATGGTAAGTGTAGAGAGCTTTTAGCTGATTGTATTGAGAGATTTACTAGCT 757
|| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 730 TGCTTAGTGATGATAAGTGTAGAGAGCTTTTAGCAGATTGTATTGAGAGATTCACTAGCT 789
Query 758 CAGCGGTATCGGTGTATATCGAGAAAACCGTTGGGGTTAATACTTATGATCAGATATTCT 817
|||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 790 CAGCTGTATCGGTGTATATCGATAAAACGGTTGGTGTTAATACTTATGATCAGATATTCG 849
Query 818 CTGGTTTGACGAATCCGAAACATCGAGATAGTGCTAGAGATGTTCTTGTTTCGGTTTGTA 877
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 850 CTGGTTTGACGAATCCGAAACATCGAGATAGTGCTCGAGATGTTCTTGTTTCGGTTTGTA 909
Query 878 ATGGAGCTCTTGAGACTTTCATGAGAACTTCTCACGATGTCTTTACATCTTCAGGGGAGA 937
|||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 910 ATGGAGCTCTTGAGACGTTCATGAGAACTTCTCATGATGTCTTCACATCTTCAGGAGAGA 969
Query 938 AAACCGATTCCTCCTTAAGGAAGTCGGAGAATCGAGAAGAATCGAGAAACGGATGGGCTG 997
|||||||||||||||| ||||||||||||||||||||| || || || ||||| |
Sbjct 970 AAACCGATTCCTCCTTGAGGAAGTCGGAGAATCGAGAA-AA-CG-GA------TGGGCAG 1020
Query 998 AGGCGCTTTCGACTACATTAGCAGTGCCAAGCAATAGGAAGTTTATGTTTGATGTTACGG 1057
|||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 1021 AGGCGCTTTCGACTACTTTAGCAGTGCCGAGTAATAGGAAGTTCATGTTTGATGTTACGG 1080
Query 1058 GAAGAGTGACGCTCGAGACAATGAGATCAATTCTTGAATTTGTAATCTTGAAAACGTCAC 1117
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1081 GAAGAGTGACGCTAGAGACGATGAGATCAATTCTTGAGTTTGTAATCTTGAAAACGTCAC 1140
Query 1118 AAAGCTTTAAGAGGAGTTTGGATGTGATTCATGAAGAAGTTACAGAGAGAGGACGTCAAG 1177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAGTTTTAAGAGGAGTTTGGATGTGATTCATGAAGAAGTTACAGAGAGAGGACGTCAAG 1200
Query 1178 TAGTTGGATACGTAGGTGCCAAATCTTCAGTGATAATCACTGTTTGTCTTGCGGTTTACC 1237
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TAGTTGGATACGTTGGTGCCAAATCTTCAGTGATAATCACTGTTTGTCTTGCGGTTTACT 1260
Query 1238 TTCACATCTTTAACCGCATTGTTCGAGGCTCTCCGGTTTACTTAAGCCAGCATTTCTAGT 1297
||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 1261 TTCACATCTTTAACCGCTTTGTTCGAGGCCCTCCGGTTTGTTTAAGCCAGCAATTCTAGT 1320
Query 1298 TA-TCGGATCGATCTTTTAGCTCGTTAGAGTTGTTAGGGACATTAGATCTTCAGCTTTC 1355
|| |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1321 TAATCGGATCGATCTATTAGCTTGTTAGAGTTGTTAGGGACATTAGATCTTCAGCCTTC 1379
> AT1G10150.1 | Symbols: | Carbohydrate-binding protein | chr1:3325824-3327614
FORWARD LENGTH=1791
Length=1791
Score = 368 bits (199), Expect = 8e-101
Identities = 651/855 (76%), Gaps = 87/855 (10%)
Strand=Plus/Plus
Query 139 ATGGACCTTGTTCGATTGAGAGACATA-GGT-TCAATTTCACCTCAGAGAAGAAGGAAAT 196
||||||||| ||||||||||||| | | ||| | | ||| | ||||||||||||||||||
Sbjct 337 ATGGACCTTCTTCGATTGAGAGA-AAAGGGTAT-ATTTTTATCTCAGAGAAGAAGGAAAT 394
Query 197 GGCTGA-TTCTATTAGCGGTTTTC-GGTGTTTCGGGTTATGGAGTTTACAGGGTTTA-CA 253
|||||| || || | || | | || || ||||| || ||||||| ||||| |||||| |
Sbjct 395 GGCTGATTTTTA-TGGC-GATCTCTGGAGTTTCTGGCTATGGAGCTTACAAGGTTTATC- 451
Query 254 ATTCTG-AATAC-ATCACTAGGAAGACGAAGCGTCTTATGAAGCTATTCGGAGGTATTGT 311
||| || || | | | || || | |||||||||| | ||||| ||||||| |||||
Sbjct 452 ATT-TGCCAT-CTGTTGCCAGAAAAAGGAAGCGTCTTTTTAAGCTTTTCGGAGCCATTGT 509
Query 312 TTCAT-TCGCCGAATTGGTAATC-GATTCGGCGGAGACGATAAGCATCGTTTCTCGGGAT 369
|| | | || |||||| | || ||||| || ||||| |||| || || || || ||
Sbjct 510 CTC-TGTAGCTGAATTGAT-CTCTGATTCAGCTGAGACCTTAAGTATGGTATCACGAGAC 567
Query 370 TTGAAAGAGTTTCTGGATTCGGATTCTGATGAGATCCCTAATAGCTTGAAACAGCTCGCG 429
|||| || ||||| |||| ||||| ||||| |||||||| |||||||| ||| |||||
Sbjct 568 GTGAAGGATTTTCTCAATTCAGATTCAGATGAAATCCCTAACAGCTTGAAGCAGATCGCG 627
Query 430 AAGATTACTAA-ATCGAAAGAGTTCACTGATT--CTTTAGCTAGGGTTTCTGAAGCCGTG 486
||||| || || ||||| ||||| || |||| |||| ||||||||||| | || |||
Sbjct 628 AAGATCAC-AACTTCGAATGAGTTTACGGATTCGCTTT--CTAGGGTTTCTCAGGCTGTG 684
Query 487 GCGATTGG-GGTTTTCCGCGGGTATAATTTCG-A---TC-A--GGAG-TTGA-AAAACGT 536
| ||||| | ||| || ||||| || | || | || | || | || | || |
Sbjct 685 ACTATTGGTGCCTTT-CGTGGGTACAAATCCGAATCGTCTATTGGTGATTCAGGAATTG- 742
Query 537 CGAAA--A--AGAATCGA---AT-TTG--AGTGTAG-TTGAT-AGAGTTTTCTCAGAGGA 584
|||| | ||| |||| | ||| || || | ||||| || |||||||||||||
Sbjct 743 AGAAATCATCAGACTCGAGTGTTGTTGATAGAGT-GATTGATAAG-GTTTTCTCAGAGGC 800
Query 585 AGGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGATT 644
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TGGAACTGGTTTTGTTTCAGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGATT 860
Query 645 TTACTC---T--GGT-GAGA----T-TGAGAT-TGA------TGATTCTTC--A-AAACC 683
|||||| | ||| |||| | ||| || ||| ||||||||| | | |||
Sbjct 861 TTACTCTGGTAAGGTAGAGAGTGGTGTGAAATGTGAGGGTTCTGATTCTTCTGAGACACC 920
Query 684 TAGATGGATGAATTTGTTTAGTGATGGTAAGTGTAGAGAGCTTTTAGCTGATTGTATTGA 743
||||||| ||| |||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 921 TAGATGGGTGACTTTGCTTGGTGATGACAAGTGTAGAGAGCTTTTAGCTGATTGTATTGA 980
Query 744 GAGATTTACTAGCTCAGCGGTATCGGTGTATATCGAGA-AA-ACCGTTGGGGT-T-AATA 799
|||||| || ||| | || | | ||||| |||| || || || | ||| | | ||||
Sbjct 981 GAGATTCACCAGCACTGCAAT-T-GGTGTGTATCTTGACAAGAC-GATGGA-TATCAATA 1036
Query 800 CTTATGATCAGATATTCTCT-GGTTTGACGAATCCGAAACATCGAG-ATAGTG-CTAGAG 856
|||||||||| || || | || ||||||||||||||||||| || |||||| | || |
Sbjct 1037 CTTATGATCAAATCTT-TGAAGGCTTGACGAATCCGAAACATC-AGGATAGTGTCAAG-G 1093
Query 857 ATGTTCTTGTTTCGGTTTGTAATGGAGCTCTTGAGACT-TTCATGAGAACTTCTCACGAT 915
| |||||||||||||||||||| || ||||| |||||| || | || || ||||||||
Sbjct 1094 ACGTTCTTGTTTCGGTTTGTAACGGTGCTCTCGAGACTATTGTT-AGGACATCTCACGAC 1152
Query 916 GTCTTTACATCTTCA 930
|| ||||||||||||
Sbjct 1153 GTGTTTACATCTTCA 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5