BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475376
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58684.1 | Symbols: | Ribosomal protein S5 family protein |... 1461 0.0
AT1G59359.1 | Symbols: | Ribosomal protein S5 family protein |... 1461 0.0
AT1G58983.1 | Symbols: | Ribosomal protein S5 family protein |... 1461 0.0
AT1G58380.1 | Symbols: XW6 | Ribosomal protein S5 family protei... 1338 0.0
AT2G41840.1 | Symbols: | Ribosomal protein S5 family protein |... 752 0.0
> AT1G58684.1 | Symbols: | Ribosomal protein S5 family protein
| chr1:21769762-21771229 REVERSE LENGTH=1126
Length=1126
Score = 1461 bits (791), Expect = 0.0
Identities = 1004/1101 (91%), Gaps = 37/1101 (3%)
Strand=Plus/Plus
Query 1 ACTTCATCGAAAATGGCAGAAAGAGGAGGAGAACGCGGCGCAGAGCGTGGCGGTGACCGT 60
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ACTTCATCGAAAATGGCGGAAAGAGGAGGAGAAAGCGGCGCAGAGCGTGGCGGTGACCGT 60
Query 61 GGTAACTTCGGACGTGGATTCGGCGGTGGAC------GTGGCGGTGGCCGTGATCGTGGT 114
||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 GGTGACTTCGGGCGTGGATTCGGCGGTGGACGTGGAGGTGGCCGTGGCCGTGATCGTGGT 120
Query 115 CCAAGAGGTCGTGGACGACGTGGAGGCCGTGCCTCGGAAGAAGCGAAATGGGTTCCAGTG 174
|||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CCAAGAGGCCGTGGAAGACGTGGAGGCCGTGCCTCGGAAGAAACGAAATGGGTTCCAGTG 180
Query 175 ACGAAACTAGGTCGTCTAGT-GCTAGACAATAAAATAACGAGGCTAGAGGAGATCTATCT 233
|| ||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||
Sbjct 181 ACCAAACTAGGTCGTCTAGTGGCT-GACAATAAAATAACGAAGCTAGAGCAGATCTATCT 239
Query 234 CCATTCTCTGCCAGTGAAGGAGTACCAAATCATAGATCTTCTTGTTGGTCCTTCGTTGAA 293
|||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 240 TCATTCTCTCCCAGTAAAGGAGTACCAAATCATAGATCATCTTGTTGGTCCTACGTTGAA 299
Query 294 AGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAG 359
Query 354 ATTCAAGGCCTTTGTTGTTGTTGGAGATGGTAATGGTCATGTTGGTTTGGGTGTCAAGTG 413
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 360 ATTCAAGGCCTTTGTTGTTGTTGGTGATGGAAATGGTCATGTTGGTTTGGGTGTCAAGTG 419
Query 414 TTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTTTCTGTTGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 420 TTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTATCAGTGGT 479
Query 474 TCCGGTTAGGAGAGGCTACTGGGGGAATAAGATTGGGAAGCCACATACTGTGCCTTGTAA 533
|||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TCCGGTGAGGAGAGGTTATTGGGGGAATAAGATTGGGAAGCCACACACTGTGCCTTGTAA 539
Query 534 GGTTACTGGGAAGTGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCTAGAGGTGCTGG 593
||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 540 GGTTACTGGTAAATGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCGAGAGGTTCTGG 599
Query 594 TATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGATGATGTCTT 653
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 TATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTCGCTGGTATTGATGATGTCTT 659
Query 654 TACTTCTTCCAGAGGATCTACTAAAACCCTTGGAAACTTTGTCAAGGCTACATTTGATTG 713
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 660 TACTTCTTCAAGAGGATCTACCAAAACCCTTGGAAACTTTGTCAAGGCTACATTCGATTG 719
Query 714 CCTGCAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACGAGATTCTCCAA 773
| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 CTTACAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACTAGATTCTCCAG 779
Query 774 ATCGCCGTACCAAGAGTACACTGATTTCCTGGCGACTAAGGCTGTTCCGGCCGCTAAAGT 833
|||||||||||||||| |||||||||||||| |||||||||||||| | || | || ||
Sbjct 780 ATCGCCGTACCAAGAGCACACTGATTTCCTGTCGACTAAGGCTGTTTCTGCAACCAAGGT 839
Query 834 TATCACCGAGGGTGAAGACCAAGCGTAAAACCTTCATGAGATGAGTTTGGTTTTATAGGT 893
|||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 840 TATCACTGAGGGTGAAGACCAAGCTTAAGACCTTCATGAGATGAGTTTGGTTT-ATAGGT 898
Query 894 TTTTGGTTGTCGCAAATATCTTTCTCTTTACAGTCTTGTTTCTTGGTTGTCTTGTG--AG 951
||| |||| |||||||||| || ||||| | ||||||||||||||||||||| | ||
Sbjct 899 TTT-GGTTATCGCAAATAT-TTA-TCTTTCCGGTCTTGTTTCTTGGTTGTCTTTTATCAG 955
Query 952 TTTTTGATATTGG-G-----GTT-------TA-T--T--T--AGTTATGTTTGGATTTTG 991
||||||||||||| | ||| || | | | |||||||||||| |||||
Sbjct 956 TTTTTGATATTGGAGTTTCAGTTACAAGGATAATCATAATTTAGTTATGTTTGGCTTTTG 1015
Query 992 TTAGATGTTTGCTTCCATGAAATGACCTTTTGCAATAATAATGCATGTCTATTTCTCAGT 1051
|||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 1016 TTAGATATTTGCTTCCATGAAATGACATTTTGCAATAAT---GCATGTCTATTTCTAAGT 1072
Query 1052 TCTTGCCATTAATCAGTTTAA 1072
|||||| |||||||||| |||
Sbjct 1073 TCTTGCAATTAATCAGTCTAA 1093
> AT1G59359.1 | Symbols: | Ribosomal protein S5 family protein
| chr1:21842304-21843745 REVERSE LENGTH=1100
Length=1100
Score = 1461 bits (791), Expect = 0.0
Identities = 1004/1101 (91%), Gaps = 37/1101 (3%)
Strand=Plus/Plus
Query 1 ACTTCATCGAAAATGGCAGAAAGAGGAGGAGAACGCGGCGCAGAGCGTGGCGGTGACCGT 60
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ACTTCATCGAAAATGGCGGAAAGAGGAGGAGAAAGCGGCGCAGAGCGTGGCGGTGACCGT 60
Query 61 GGTAACTTCGGACGTGGATTCGGCGGTGGAC------GTGGCGGTGGCCGTGATCGTGGT 114
||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 GGTGACTTCGGGCGTGGATTCGGCGGTGGACGTGGAGGTGGCCGTGGCCGTGATCGTGGT 120
Query 115 CCAAGAGGTCGTGGACGACGTGGAGGCCGTGCCTCGGAAGAAGCGAAATGGGTTCCAGTG 174
|||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CCAAGAGGCCGTGGAAGACGTGGAGGCCGTGCCTCGGAAGAAACGAAATGGGTTCCAGTG 180
Query 175 ACGAAACTAGGTCGTCTAGT-GCTAGACAATAAAATAACGAGGCTAGAGGAGATCTATCT 233
|| ||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||
Sbjct 181 ACCAAACTAGGTCGTCTAGTGGCT-GACAATAAAATAACGAAGCTAGAGCAGATCTATCT 239
Query 234 CCATTCTCTGCCAGTGAAGGAGTACCAAATCATAGATCTTCTTGTTGGTCCTTCGTTGAA 293
|||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 240 TCATTCTCTCCCAGTAAAGGAGTACCAAATCATAGATCATCTTGTTGGTCCTACGTTGAA 299
Query 294 AGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAG 359
Query 354 ATTCAAGGCCTTTGTTGTTGTTGGAGATGGTAATGGTCATGTTGGTTTGGGTGTCAAGTG 413
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 360 ATTCAAGGCCTTTGTTGTTGTTGGTGATGGAAATGGTCATGTTGGTTTGGGTGTCAAGTG 419
Query 414 TTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTTTCTGTTGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 420 TTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTATCAGTGGT 479
Query 474 TCCGGTTAGGAGAGGCTACTGGGGGAATAAGATTGGGAAGCCACATACTGTGCCTTGTAA 533
|||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TCCGGTGAGGAGAGGTTATTGGGGGAATAAGATTGGGAAGCCACACACTGTGCCTTGTAA 539
Query 534 GGTTACTGGGAAGTGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCTAGAGGTGCTGG 593
||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 540 GGTTACTGGTAAATGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCGAGAGGTTCTGG 599
Query 594 TATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGATGATGTCTT 653
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 TATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTCGCTGGTATTGATGATGTCTT 659
Query 654 TACTTCTTCCAGAGGATCTACTAAAACCCTTGGAAACTTTGTCAAGGCTACATTTGATTG 713
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 660 TACTTCTTCAAGAGGATCTACCAAAACCCTTGGAAACTTTGTCAAGGCTACATTCGATTG 719
Query 714 CCTGCAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACGAGATTCTCCAA 773
| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 CTTACAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACTAGATTCTCCAG 779
Query 774 ATCGCCGTACCAAGAGTACACTGATTTCCTGGCGACTAAGGCTGTTCCGGCCGCTAAAGT 833
|||||||||||||||| |||||||||||||| |||||||||||||| | || | || ||
Sbjct 780 ATCGCCGTACCAAGAGCACACTGATTTCCTGTCGACTAAGGCTGTTTCTGCAACCAAGGT 839
Query 834 TATCACCGAGGGTGAAGACCAAGCGTAAAACCTTCATGAGATGAGTTTGGTTTTATAGGT 893
|||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 840 TATCACTGAGGGTGAAGACCAAGCTTAAGACCTTCATGAGATGAGTTTGGTTT-ATAGGT 898
Query 894 TTTTGGTTGTCGCAAATATCTTTCTCTTTACAGTCTTGTTTCTTGGTTGTCTTGTG--AG 951
||| |||| |||||||||| || ||||| | ||||||||||||||||||||| | ||
Sbjct 899 TTT-GGTTATCGCAAATAT-TTA-TCTTTCCGGTCTTGTTTCTTGGTTGTCTTTTATCAG 955
Query 952 TTTTTGATATTGG-G-----GTT-------TA-T--T--T--AGTTATGTTTGGATTTTG 991
||||||||||||| | ||| || | | | |||||||||||| |||||
Sbjct 956 TTTTTGATATTGGAGTTTCAGTTACAAGGATAATCATAATTTAGTTATGTTTGGCTTTTG 1015
Query 992 TTAGATGTTTGCTTCCATGAAATGACCTTTTGCAATAATAATGCATGTCTATTTCTCAGT 1051
|||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 1016 TTAGATATTTGCTTCCATGAAATGACATTTTGCAATAAT---GCATGTCTATTTCTAAGT 1072
Query 1052 TCTTGCCATTAATCAGTTTAA 1072
|||||| |||||||||| |||
Sbjct 1073 TCTTGCAATTAATCAGTCTAA 1093
> AT1G58983.1 | Symbols: | Ribosomal protein S5 family protein
| chr1:21806020-21807487 REVERSE LENGTH=1126
Length=1126
Score = 1461 bits (791), Expect = 0.0
Identities = 1004/1101 (91%), Gaps = 37/1101 (3%)
Strand=Plus/Plus
Query 1 ACTTCATCGAAAATGGCAGAAAGAGGAGGAGAACGCGGCGCAGAGCGTGGCGGTGACCGT 60
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ACTTCATCGAAAATGGCGGAAAGAGGAGGAGAAAGCGGCGCAGAGCGTGGCGGTGACCGT 60
Query 61 GGTAACTTCGGACGTGGATTCGGCGGTGGAC------GTGGCGGTGGCCGTGATCGTGGT 114
||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 GGTGACTTCGGGCGTGGATTCGGCGGTGGACGTGGAGGTGGCCGTGGCCGTGATCGTGGT 120
Query 115 CCAAGAGGTCGTGGACGACGTGGAGGCCGTGCCTCGGAAGAAGCGAAATGGGTTCCAGTG 174
|||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CCAAGAGGCCGTGGAAGACGTGGAGGCCGTGCCTCGGAAGAAACGAAATGGGTTCCAGTG 180
Query 175 ACGAAACTAGGTCGTCTAGT-GCTAGACAATAAAATAACGAGGCTAGAGGAGATCTATCT 233
|| ||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||
Sbjct 181 ACCAAACTAGGTCGTCTAGTGGCT-GACAATAAAATAACGAAGCTAGAGCAGATCTATCT 239
Query 234 CCATTCTCTGCCAGTGAAGGAGTACCAAATCATAGATCTTCTTGTTGGTCCTTCGTTGAA 293
|||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 240 TCATTCTCTCCCAGTAAAGGAGTACCAAATCATAGATCATCTTGTTGGTCCTACGTTGAA 299
Query 294 AGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAG 359
Query 354 ATTCAAGGCCTTTGTTGTTGTTGGAGATGGTAATGGTCATGTTGGTTTGGGTGTCAAGTG 413
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 360 ATTCAAGGCCTTTGTTGTTGTTGGTGATGGAAATGGTCATGTTGGTTTGGGTGTCAAGTG 419
Query 414 TTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTTTCTGTTGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 420 TTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTATCAGTGGT 479
Query 474 TCCGGTTAGGAGAGGCTACTGGGGGAATAAGATTGGGAAGCCACATACTGTGCCTTGTAA 533
|||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TCCGGTGAGGAGAGGTTATTGGGGGAATAAGATTGGGAAGCCACACACTGTGCCTTGTAA 539
Query 534 GGTTACTGGGAAGTGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCTAGAGGTGCTGG 593
||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 540 GGTTACTGGTAAATGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCGAGAGGTTCTGG 599
Query 594 TATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGATGATGTCTT 653
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 TATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTCGCTGGTATTGATGATGTCTT 659
Query 654 TACTTCTTCCAGAGGATCTACTAAAACCCTTGGAAACTTTGTCAAGGCTACATTTGATTG 713
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 660 TACTTCTTCAAGAGGATCTACCAAAACCCTTGGAAACTTTGTCAAGGCTACATTCGATTG 719
Query 714 CCTGCAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACGAGATTCTCCAA 773
| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 CTTACAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACTAGATTCTCCAG 779
Query 774 ATCGCCGTACCAAGAGTACACTGATTTCCTGGCGACTAAGGCTGTTCCGGCCGCTAAAGT 833
|||||||||||||||| |||||||||||||| |||||||||||||| | || | || ||
Sbjct 780 ATCGCCGTACCAAGAGCACACTGATTTCCTGTCGACTAAGGCTGTTTCTGCAACCAAGGT 839
Query 834 TATCACCGAGGGTGAAGACCAAGCGTAAAACCTTCATGAGATGAGTTTGGTTTTATAGGT 893
|||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 840 TATCACTGAGGGTGAAGACCAAGCTTAAGACCTTCATGAGATGAGTTTGGTTT-ATAGGT 898
Query 894 TTTTGGTTGTCGCAAATATCTTTCTCTTTACAGTCTTGTTTCTTGGTTGTCTTGTG--AG 951
||| |||| |||||||||| || ||||| | ||||||||||||||||||||| | ||
Sbjct 899 TTT-GGTTATCGCAAATAT-TTA-TCTTTCCGGTCTTGTTTCTTGGTTGTCTTTTATCAG 955
Query 952 TTTTTGATATTGG-G-----GTT-------TA-T--T--T--AGTTATGTTTGGATTTTG 991
||||||||||||| | ||| || | | | |||||||||||| |||||
Sbjct 956 TTTTTGATATTGGAGTTTCAGTTACAAGGATAATCATAATTTAGTTATGTTTGGCTTTTG 1015
Query 992 TTAGATGTTTGCTTCCATGAAATGACCTTTTGCAATAATAATGCATGTCTATTTCTCAGT 1051
|||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 1016 TTAGATATTTGCTTCCATGAAATGACATTTTGCAATAAT---GCATGTCTATTTCTAAGT 1072
Query 1052 TCTTGCCATTAATCAGTTTAA 1072
|||||| |||||||||| |||
Sbjct 1073 TCTTGCAATTAATCAGTCTAA 1093
> AT1G58380.1 | Symbols: XW6 | Ribosomal protein S5 family protein
| chr1:21689032-21690256 FORWARD LENGTH=1109
Length=1109
Score = 1338 bits (724), Expect = 0.0
Identities = 837/891 (94%), Gaps = 9/891 (1%)
Strand=Plus/Plus
Query 3 TTCATCGAAAATGGCAGAAAGAGGAGGAGAACGCGGCGCAGAGCGTGGCGGTGACCGTGG 62
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 74 TTCATCGAAAATGGCGGAAAGAGGAGGAGAAGGCGGCGCAGAGCGTGGCGGTGACCGTGG 133
Query 63 TAACTTCGGACGTGGATTCGGCGGTGGAC------GTGGCGGTGGCCGTGATCGTGGTCC 116
| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 134 TGACTTCGGACGTGGATTCGGCGGTGGACGTGGAGGTGGCCGTGGCCGTGATCGTGGTCC 193
Query 117 AAGAGGTCGTGGACGACGTGGAGGCCGTGCCTCGGAAGAAGCGAAATGGGTTCCAGTGAC 176
|||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 194 AAGAGGCCGTGGAAGACGTGGAGGCCGTGCCTCGGAAGAAACGAAATGGGTTCCAGTGAC 253
Query 177 GAAACTAGGTCGTCTAGT-GCTAGACAATAAAATAACGAGGCTAGAGGAGATCTATCTCC 235
||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||
Sbjct 254 CAAACTAGGTCGTCTAGTGGCT-GACAATAAAATAACGAAGCTAGAGCAGATCTATCTCC 312
Query 236 ATTCTCTGCCAGTGAAGGAGTACCAAATCATAGATCTTCTTGTTGGTCCTTCGTTGAAAG 295
||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 313 ATTCTCTCCCAGTAAAGGAGTACCAAATCATAGATCATCTTGTTGGTCCTACGTTGAAAG 372
Query 296 ACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAGAT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 ACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTAGAT 432
Query 356 TCAAGGCCTTTGTTGTTGTTGGAGATGGTAATGGTCATGTTGGTTTGGGTGTCAAGTGTT 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 433 TCAAGGCCTTTGTTGTTGTTGGTGATGGTAATGGTCATGTTGGTTTGGGTGTCAAGTGTT 492
Query 416 CTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTTTCTGTTGTTC 475
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 493 CTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTCTCTGTTGTTC 552
Query 476 CGGTTAGGAGAGGCTACTGGGGGAATAAGATTGGGAAGCCACATACTGTGCCTTGTAAGG 535
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 553 CGGTGAGGAGAGGTTACTGGGGGAATAAGATTGGGAAGCCACACACTGTGCCTTGTAAGG 612
Query 536 TTACTGGGAAGTGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCTAGAGGTGCTGGTA 595
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 613 TTACTGGGAAGTGTGGCTCTGTTACTGTGAGAATGGTTCCTGCTCCGAGAGGTTCTGGTA 672
Query 596 TTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGATGATGTCTTTA 655
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 673 TTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTCGCTGGTATTGATGATGTCTTTA 732
Query 656 CTTCTTCCAGAGGATCTACTAAAACCCTTGGAAACTTTGTCAAGGCTACATTTGATTGCC 715
||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||
Sbjct 733 CTTCTTCCAGAGGATCTACTAAAACTCTTGGAAACTTTGTCAAGGCGACGTTTGACTGCT 792
Query 716 TGCAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACGAGATTCTCCAAAT 775
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 793 TACAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACTAGATTCTCCAGAT 852
Query 776 CGCCGTACCAAGAGTACACTGATTTCCTGGCGACTAAGGCTGTTCCGGCCGCTAAAGTTA 835
|||| ||||||||| ||||||||||| || |||||||||||||| | || | || ||||
Sbjct 853 CGCCCTACCAAGAGCACACTGATTTCTTGTCGACTAAGGCTGTTTCTGCAACCAAGGTTA 912
Query 836 TCACCGAGGGTGAAGACCAAGCGTAAAACCTTCATGAGATGAGTTT-GGTT 885
|||| ||||||||||||||||| ||| ||||||||||||| ||||| ||||
Sbjct 913 TCACGGAGGGTGAAGACCAAGCTTAAGACCTTCATGAGATAAGTTTTGGTT 963
> AT2G41840.1 | Symbols: | Ribosomal protein S5 family protein
| chr2:17459788-17461539 REVERSE LENGTH=1227
Length=1227
Score = 752 bits (407), Expect = 0.0
Identities = 724/875 (83%), Gaps = 29/875 (3%)
Strand=Plus/Plus
Query 7 TCGAAAATGGCAGAAAGAGGAGGAGAACGCGGCGCAGAGCGTGGCGGTGACCGTGGTAAC 66
|||| |||||| ||| | || |||||||| || | |||||||| || || |||||| |
Sbjct 136 TCGACAATGGCCGAACGTGGTGGAGAACGTGGTGTTGAGCGTGGTGGAGAACGTGGTGAT 195
Query 67 TTCGGACGTGGATTC---GGCGGTGGACGTGGCGGTGGCCGT-GA--TCGTGGTCCAAGA 120
|||||||| |||||| ||| ||||| || | || | ||| || ||||| | ||
Sbjct 196 TTCGGACGAGGATTCGGAGGCCGTGGAGGTCGTGGAGATCGTGGAGGGCGTGGACGTGGA 255
Query 121 -G--GTCGTGGACGACGTGGAGGCCGTGCCTCG-GAAGAAGCGAAATGGGTTCCAGTGAC 176
| || |||| || |||||||| |||||| | ||||||| ||||||||||||||||||
Sbjct 256 GGCCGTGGTGGTCGTCGTGGAGGGCGTGCC-AGTGAAGAAGAGAAATGGGTTCCAGTGAC 314
Query 177 GAAACTAGGTCGTCTAGT----GCTAGACAATAAAATAACGAGGCTAGAGGAGATCTATC 232
|| || |||||||| || ||| | | ||| | | | | | ||||| |||||||||
Sbjct 315 CAAGCTTGGTCGTCTCGTGGCGGCTGGTC-ATATCA-AGC-A-GATAGAGCAGATCTATC 370
Query 233 TCCATTCTCTGCCAGTGAAGGAGTACCAAATCATAGATCTTCTTGTTGGTCCTTCGTTGA 292
| ||||| || || || ||||||||||| ||||| ||| | || | ||||| | ||||
Sbjct 371 TTCATTCACTCCCGGTTAAGGAGTACCAGATCATTGATATGCTCATCGGTCCAACATTGA 430
Query 293 AAGACGAGGTTATGAAGATCATGCCTGTTCAGAAACAAACCAGAGCTGGTCAAAGGACTA 352
| || ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 431 AGGATGAGGTAATGAAAATCATGCCGGTTCAGAAACAAACCAGGGCTGGTCAAAGGACTA 490
Query 353 GATTCAAGGCCTTTGTTGTTGTTGGAGATGGTAATGGTCATGTTGGTTTGGGTGTCAAGT 412
||||||||||||||||||| |||||||||||||||||||||||||| ||||| || || |
Sbjct 491 GATTCAAGGCCTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGGTTGGGAGTGAAAT 550
Query 413 GTTCTAAGGAAGTTGCTACTGCCATTAGAGGAGCTATTATTCTTGCTAAGCTTTCTGTTG 472
| ||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct 551 GCTCTAAGGAAGTTGCTACGGCCATTAGAGGAGCGATTATTCTCGCTAAGCTGTCTGTTG 610
Query 473 TTCCGGTTAGGAGAGGCTACTGGGGGAATAAGATTGGGAAGCCACATACTGTGCCTTGTA 532
|||| || |||||||| |||||||| || |||||||||||||||||||| || |||||||
Sbjct 611 TTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACATACGGTTCCTTGTA 670
Query 533 AGGTTACTGGGAAGTGTGGTTCTGTTACTGTGAGAATGGTTCCTGCTCCTAGAGGTGCTG 592
|||| |||||||||||||| ||||| || ||||| |||||||| |||||||||||| |||
Sbjct 671 AGGTGACTGGGAAGTGTGGATCTGTGACAGTGAGGATGGTTCCAGCTCCTAGAGGTTCTG 730
Query 593 GTATTGTTGCTGCTAGGGTTCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGATGATGTCT 652
||||||| |||||||| |||||||||||||||||||| || ||||| ||||||||||| |
Sbjct 731 GTATTGTGGCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAATTGATGATGT-T 789
Query 653 TT-ACTTCTTCCAGAGGATCTACTAAAACCCTTGGAAACTTTGTCAAGGCTACATTTGAT 711
|| ||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||| |||
Sbjct 790 TTCACTTCCTCCAGGGGATCCACCAAAACTCTTGGAAACTTCGTCAAGGCTACATTCGAT 849
Query 712 TGCCTGCAGAAGACATATGGGTTCCTTACACCAGAGTTCTGGAAAGAGACGAGATTCTCC 771
||||| |||||||| || || |||||||| |||||||||||||| ||||| ||||||||
Sbjct 850 TGCCTTCAGAAGACTTACGGATTCCTTACCCCAGAGTTCTGGAAGGAGACAAGATTCTCT 909
Query 772 AAATCGCCGTACCAAGAGTACACTGATTTCCTGGCGACTAAGGCTGTTCCGGCC-GCTAA 830
| ||| || ||||||||| ||||||||||||||||| | |||||| || || || || ||
Sbjct 910 AGATCACCATACCAAGAGCACACTGATTTCCTGGCGTCCAAGGCTCTTTCGACCAGC-AA 968
Query 831 AGTT-ATCACCGAG-GGT-GAAGACCAAGCGTAAA 862
| | | || || ||| ||||||||||| ||||
Sbjct 969 ACCCGA-C-CC-AGTGGTTGAAGACCAAGCCTAAA 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5