BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475389
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58440.1 | Symbols: XF1, SQE1 | FAD/NAD(P)-binding oxidoredu... 2878 0.0
> AT1G58440.1 | Symbols: XF1, SQE1 | FAD/NAD(P)-binding oxidoreductase
family protein | chr1:21713842-21717290 REVERSE LENGTH=1892
Length=1892
Score = 2878 bits (1558), Expect = 0.0
Identities = 1763/1857 (95%), Gaps = 34/1857 (2%)
Strand=Plus/Plus
Query 1 AAAAATTCTCTGTAAAATCAGAACGATGATGGAGTCACAATTATGGAATTGGATCTTACC 60
||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 17 AAAAAATCTCTGTAAAAGCAGAACGATAATGGAGTCACAATTATGGAATTGGATCTTACC 76
Query 61 TCTTTTGATCTCTTCTCTCCTCATCTCCATCGTCGCTTTCTATGGATTCTTCTTCAAACC 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 77 TCTTTTGATCTCTTCTCTCCTCATCTCCTTCGTCGCTTTCTATGGATTCTTCGTCAAACC 136
Query 121 GAAGCGGAACAGTATCCGTCACGATCGG---ACTGTTTCTACCGTCACTTCCGACGTCGG 177
|||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 137 GAAGCGGAACGGTCTCCGTCACGATCGGAAAACTGTTTCTACCGTCACCTCCGACGTCGG 196
Query 178 ATCTGTTAATATTACCGGTGATACCATCGCCGATGTCATTGTTGTTGGAGCTGGTGTTGC 237
|||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 197 ATCTGTTAATATTACCGGAGATACTGTCGCTGATGTCATTGTTGTTGGAGCTGGTGTTGC 256
Query 238 TGGTTCTGCTCTTGCTTATACTCTTGGCAAGGATAAACGCCGAGTTCACGTGATTGAAAG 297
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 257 TGGTTCTGCTCTTGCTTATACTCTTGGAAAGGATAAACGCCGAGTTCATGTGATTGAAAG 316
Query 298 AGATTTATCGGAGCCTGATCGTATTGTTGGGGAGTTGTTACAGCCTGGGGGTTACCTTAA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 317 AGATTTATCGGAGCCTGATCGTATTGTTGGGGAGTTGTTACAGCCTGGGGGTTACCTCAA 376
Query 358 GTTACTGGAGTTGGGAATTGAAGATTGTGTGGAGGAAATAGATGCTCAGCGTGTGTATGG 417
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 377 GTTACTGGAGTTGGGAATTGAAGATTGTGTGGAAGAAATAGATGCTCAGCGTGTGTATGG 436
Query 418 TTATGCACTTTTTAAGGATGGGAAACGTATTCGCTTAGCTTATCCTTTGGAGAAGTTTCA 477
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 437 TTATGCACTTTTTAAAAATGGGAAACGCATTCGCTTAGCTTATCCTTTGGAGAAGTTTCA 496
Query 478 TGAAGATGTATCGGGAAGGAGCTTTCACAATGGACGTTTTATACAAAGAATGCGGGAGAA 537
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 497 CGAAGATGTATCTGGAAGGAGCTTTCACAATGGACGTTTTATTCAAAGAATGCGGGAGAA 556
Query 538 AGCTGCTTCACTTCCCAATGTTCAGCTAGAGCAAGGAACAGTTGTTTCTCTTCTAGAAGA 597
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 557 AGCTGCTTCACTTCCCAATGTTCAGCTAGAGCAAGGAACAGTTCTTTCTCTTCTAGAAGA 616
Query 598 GAATGGGACTATCAAAGGTGTGAGATATAAGAATAAAGCAGGGGAGGAACAAACAGCATT 657
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 617 GAATGGGACTATCAAAGGTGTGAGATATAAGAATAAAGCAGGAGAGGAACAAACCGCATT 676
Query 658 TGCAGCTTTGACTATAGTTTGTGACGGTTGTTTCTCAAACCTGCGTCGCTCTTTGTGCAA 717
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 677 TGCAGCTTTGACTATAGTTTGTGATGGTTGTTTCTCAAACCTGCGTCGCTCTTTGTGCAA 736
Query 718 TCCTCAGGTCGAGGTGCCTTCTTGTTTTGTCGGTTTGGTCCTAGAGAACTGCAATCTCCC 777
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 737 TCCTCAGGTCGAGGTGCCTTCTTGTTTTGTCGGGTTGGTCCTAGAGAACTGCAATCTCCC 796
Query 778 ATATGCAAACCATGGACATGTCGTCTTAGCAGATCCATCACCAATTTTGATGTATCCAAT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 ATATGCAAACCATGGACATGTCGTCTTAGCAGATCCATCACCAATTTTGATGTATCCAAT 856
Query 838 TAGTAGCACAGAGGTCCGGTGCCTAGTCGATGTTCCCGGCCAGAAAGTGCCGTCCATTGC 897
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 857 TAGTAGCACAGAGGTGCGGTGCCTAGTTGATGTTCCCGGCCAGAAAGTGCCGTCCATTGC 916
Query 898 AAATGGTGAAATGAAAAACTATTTGAAGACTGTTGTGGCTCCTCAGATGCCTCATGAGGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 AAATGGTGAAATGAAAAACTATTTGAAGACTGTTGTGGCTCCTCAGATGCCTCATGAGGT 976
Query 958 CTATGACTCTTTCATTGCTGCGATTGATAAAGGAAATATTAAGTCCATGCCAAACAGAAG 1017
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 977 CTATGACTCTTTCATTGCTGCGGTTGATAAAGGAAATATTAAGTCCATGCCAAACAGAAG 1036
Query 1018 CATGCCAGCTTCTCCTTATCCTACTCCAGGGGCTCTGTTAATGGGAGATGCATTTAACAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CATGCCAGCTTCTCCTTATCCTACTCCAGGGGCTCTGTTAATGGGAGATGCATTTAACAT 1096
Query 1078 GCGTCATCCTTTGACGGGTGGAGGAATGACGGTTGCATTAGCTGACATTGTTGTCCTGCG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 GCGTCATCCTTTGACGGGTGGAGGAATGACGGTTGCATTAGCTGACATTGTTGTCCTGCG 1156
Query 1138 TAATCTTCTTAGACCGCTGCGTGACCTTAGTGACGGCGCTAGTCTCTGCAAATACCTCGA 1197
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1157 TAATCTCCTTAGACCGCTGCGTGATCTTAGTGACGGCGCTAGTCTCTGCAAATATCTTGA 1216
Query 1198 ATCGTTTTACACTCTGCGAAAGCCAGTGGCAGCAACAATCAACACCCTTGCAAATGCTCT 1257
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1217 ATCATTTTACACTCTGCGAAAGCCAGTTGCAGCAACAATCAACACCCTTGCGAATGCTCT 1276
Query 1258 TTACCAAGTGTTCTGTTCATCAAAAAATGAAGCAAGAAACGAGATGAGGGAAGCGTGCTT 1317
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1277 TTACCAAGTGTTCTGTTCATCAGAAAATGAAGCAAGAAACGAGATGAGGGAAGCTTGCTT 1336
Query 1318 CGATTATCTGGGCCTCGGGGGTATGTGCACAAGTGGACCAGTATCTTTGCTTTCGGGTTT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 CGATTATCTGGGCCTCGGGGGTATGTGCACAAGTGGACCAGTATCTTTGCTTTCGGGTTT 1396
Query 1378 GAACCCTCGACCGCTAACACTTGTGTGCCATTTCTTTGCGGTTGCGATATATGGAGTCAT 1437
|||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 1397 GAACCCTCGACCATTAACACTTGTCTGCCATTTCTTTGCGGTTGCGGTTTATGGAGTCAT 1456
Query 1438 ACGGTTGTTAATCCCATTCCCTTCCCCAAAACGAATCTGGCTTGGAGCCAAATTGATATC 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1457 ACGGTTGTTAATCCCATTCCCTTCCCCAAAACGAATCTGGCTTGGAGCCAAATTAATCTC 1516
Query 1498 GGGAGCATCGGGGATAATATTTCCGATAATAAAAGCGGAAGGAGTTAGGCAGATGTTTTT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 GGGAGCATCGGGGATAATATTTCCGATAATAAAAGCGGAAGGAGTTAGGCAGATGTTTTT 1576
Query 1558 CCCAGCAACTGTACCTGCATACTAC-AGA--GCTCCTCCGGTTAAAGGAGAAACCAAATG 1614
||||||||||||||||||||||||| | | |||||| | ||| ||||||||||||||
Sbjct 1577 CCCAGCAACTGTACCTGCATACTACTACAAAGCTCCTACAGTT---GGAGAAACCAAATG 1633
Query 1615 TTCATAGTTCCGATTGATTCTGTCA-GAAGAAATGCCATCCAAAAGAAAATGAAAGTTGT 1673
||||||||||| | | ||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1634 TTCATAGTTCCAAATAATTCTGTCACGA-GAAATGCCATACAAAAGAAAATGAAAGTTGT 1692
Query 1674 GGATTGCATCTGGTGAGTTTTTGTTGTGTTAGTGTTCTTTAAACGTATAAAAGTGA-GAT 1732
||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 1693 GGATTGCATTTGGTGTGTTT--GTTGTGTAAGTGTTCTTTAAACGTATAAAAGTGATGAT 1750
Query 1733 --T---AT------CTCTGttttttt-ATA--GGT-TATGATGGTT--ATCTTAGTTGCT 1775
| || |||||||||||| ||| ||| |||||||||| |||||||||||
Sbjct 1751 ACTGCGATGATTATCTCTGTTTTTTTTATATAGGTATATGATGGTTGTATCTTAGTTGCA 1810
Query 1776 AACGCTATACCATTCTTTTACATAT--CGAAGTCTCTGCGTTATAAAATTTG-TTTT 1829
|||| |||||||||||||||||||| | ||||| ||||||||||||||||| ||||
Sbjct 1811 AACGGTATACCATTCTTTTACATATATCCAAGTCGCTGCGTTATAAAATTTGGTTTT 1867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5