BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475391
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58420.1 | Symbols: | Uncharacterised conserved protein UCP... 961 0.0
> AT1G58420.1 | Symbols: | Uncharacterised conserved protein UCP031279
| chr1:21707379-21708118 FORWARD LENGTH=740
Length=740
Score = 961 bits (520), Expect = 0.0
Identities = 632/682 (93%), Gaps = 24/682 (4%)
Strand=Plus/Plus
Query 1 CaaaaaaaaaaaTGGGAAAGAGAGGACAAAAACAGAACAAGTTCTTGAGAATCGTCACCA 60
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 18 CAAAACAAAAAATGGGAAAGAGAGGACAAAAACAGAACAGGTTCTTGAGAATCGTCACCA 77
Query 61 TGCCTCTAAAAGTTCTATGCAAGGCTCGTGATCTCTACATGAGAAGCATCACAGGTTGCG 120
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 78 TGCCTCTTAAAGTTCTATGCAAAGCTCGTGATCTCTACATGAGAAGCATCACAGGTTGTG 137
Query 121 CAGCTCGAACTCACTACTCTTCAGCCGTGGACGCCGCCTCCGTTCCCTTTCCGAGAAGCC 180
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 138 CAGCTCGAACTCACTACTCTTCAGCCGTCGACGCCGCATCCGTTCCATTTCCGAGAAGCC 197
Query 181 GGAGTACTTCCTCCGCCTTCTCCTCCTCTGCCTCTTCTCGGAGAAGATCTTCCGATTTCA 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 198 GGAGTACTTCCTCCGCCTTCTCTTCCTCTGCCTCTTCTCGGAGAAGATCTTCGGATTTCA 257
Query 241 CTTTCGATGATGATTATAGCGAGCTGCTTAGAGCTGCTTCCGCTAGAAGTTTGGGTCATA 300
||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 258 CTTTCGACGATGATTATAGCGAGCTGCTTAGAGCTGCTTCCGTTAGGAGTTTAGGTCATA 317
Query 301 AGAATGAGATTGACATGATCATACACCAACAGCTACAGCTTCAGCAGCAGCAGCAGCGGC 360
||||||||||||||||||||||||| ||||||| | | |||||||||||||| ||||
Sbjct 318 AGAATGAGATTGACATGATCATACAACAACAGC-A-A----CAGCAGCAGCAGCAACGGC 371
Query 361 AGGAGAATCGCGTTGCGATGGGAGCGGTTGCGGTAGCGGTTAAAGGCGGTTTGCCTAAGA 420
||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 372 AGGAGAATCGCGTTGCGATGGGAGCGG-T----TA-CGGTTAAAGGCGGTTTGCCTAAGA 425
Query 421 GCTCGAGTGTTGGGATGACAATGGCGAGGATTGATGAAGAAGATGAAGAAGAAGGATCTT 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 426 GCTCGAGTGTTGGGATGACAATGGCTAGGATTGATGAAGAAGATGAAGAAGAAGGATCTG 485
Query 481 TAAAGAATCAAAAGAAGGGATCTGATTTCTTATATCCTCGTAGCAGATCACATGCTGTTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TAAAGAATCAAAAGAAGGGATCTGATTTCTTATATCCTCGTAGCAGATCACATGCTGTTA 545
Query 541 CTATAAGAGGATCTAAGTTTTAATATA--CTA--ACT-AATTGTCAATTT-ATTTTTCTT 594
|||| |||||||| ||||||||||||| ||| | | |||||||| ||| |||||||||
Sbjct 546 CTATTAGAGGATCCAAGTTTTAATATATACTACTAATTAATTGTCAGTTTTATTTTTCTT 605
Query 595 TTGATTT--T--AAAAGAATGTTCTTA-TAAGAACATGGTTATGGAATTATTTTGATGTA 649
||||||| | |||||||||||| || | | | |||| |||||||||||||||||||||
Sbjct 606 TTGATTTAATTTAAAAGAATGTTCCTAATTATA-CATGTTTATGGAATTATTTTGATGTA 664
Query 650 AAGTTACTGTCATGGATTTATA 671
||||||||||||||||||||||
Sbjct 665 AAGTTACTGTCATGGATTTATA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5