BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475392
Length=2887
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58370.1 | Symbols: RXF12, ATXYN1 | glycosyl hydrolase famil... 4265 0.0
> AT1G58370.1 | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family
10 protein / carbohydrate-binding domain-containing protein
| chr1:21684584-21688321 FORWARD LENGTH=2903
Length=2903
Score = 4265 bits (2309), Expect = 0.0
Identities = 2700/2891 (93%), Gaps = 17/2891 (1%)
Strand=Plus/Plus
Query 1 ATCAAAATCCAGACAAGAAATTAAGAGAAAGCATGGAGATTTCAAGAAAAGACAATGAAG 60
||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 6 ATCGAAATCCAGACAAGAAATCAAGAGAAAGCATGGAGGTTTCAAGAAAAGACAATGAAG 65
Query 61 AGCCTGAAAAACAGAACAACAACAATGTAGCATCTATTATTGGTTCGGATCGCACCAATG 120
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 66 AGCCTGAAAAACAGAACAACAACAATGTAGCATCTATAATTGGTTCTGATCGCACCAATG 125
Query 121 TAATTGTGAATCATGACTTCTCTTCCGGGATGCATTCGTGGCATCCGAATTGCTGCGAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 126 TAATTGTGAATCATGACTTCTCTTCCGGGATGCATTCGTGGCATCCGAATTGCTGTGAGG 185
Query 181 CCTTTGTTGTCACCGCTGAGTCTAATGTCTCTCACGGTGTTTTAGACCCGTCAAAGTGCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 186 CCTTTGTTGTCACCGCTGAGTCTAATGTCTCTCACGGTGTTTTAGACCCGTCAAAGTGTG 245
Query 241 GTACCTACGTAGCTGTCACA-AACCGGAAAGAAACTTGGCAAGGCTTGGAGCAAGACATC 299
||| ||| |||| ||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 246 GTAGCTATGTAGTTGTCA-AGAACAGGAAAGAAACTTGGCAAGGCTTGGAGCAAGACATC 304
Query 300 ACAAGCAGAGTGAAACCTTGTTGTCCTTATAAAGTTTCTGCAACTGTTGCTGTGTCTGGA 359
|||| |||||| ||||||||| ||| |||||||||||| |||||||||||||| ||||||
Sbjct 305 ACAAACAGAGTAAAACCTTGTAGTCTTTATAAAGTTTCAGCAACTGTTGCTGTCTCTGGA 364
Query 360 CCTGTTCAAGGATTGGTAGAGGTTATGGCCACCTTGAAGCTCGAAAACGGACAATCGCAA 419
|| || || |||||||| |||||||||||||||||||||||||||| | |||||| |||
Sbjct 365 CCGGTGCATGGATTGGTGGAGGTTATGGCCACCTTGAAGCTCGAAAGCCAACAATCTCAA 424
Query 420 ACAAACTATCAGTTTATCGCAAAAGCTTGTGTCTTCAAGGAGAAGTGGGTGACACTAGAA 479
|||||||||||||| || |||||| ||||||||||||||||||||||||||| |||||||
Sbjct 425 ACAAACTATCAGTTCATAGCAAAAACTTGTGTCTTCAAGGAGAAGTGGGTGAGACTAGAA 484
Query 480 GGCATGTTTTCGTTACCGAGCATAACAGAAAAAGTTGTTTTCTATTTGGAAGGCCCGTCA 539
|||||||| |||||||| ||| || ||||||||||||| |||||||||||||||||||||
Sbjct 485 GGCATGTTCTCGTTACCTAGCTTACCAGAAAAAGTTGTATTCTATTTGGAAGGCCCGTCA 544
Query 540 CCGGGGATCGATCTCCTCATACAGTCAGTTACCATTCATAGCGAAAGCGAACTTGAGCTG 599
|||||||||||||| ||||||||||| |||||||| || |||||||||| | |||||||
Sbjct 545 CCGGGGATCGATCTTCTCATACAGTCTGTTACCATCCACCGCGAAAGCGAGCCTGAGCTG 604
Query 600 GACCGTGTTACTGCTGAAGATGAGACTATTGTAGTGAACCCAAACTTTGAAGATGGACTA 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GAGCGTGTTACTGCTGAAGATGAGACTATTGTAGTGAACCCAAACTTTGAAGATGGACTA 664
Query 660 ACTAACTGGTCTGGGAGAAGCTGCAAGATTGTGTTGCATGACTCAATGGCTGATGGAAAG 719
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AATAACTGGTCTGGGAGAAGCTGCAAGATTGTGTTGCATGACTCAATGGCTGATGGAAAG 724
Query 720 ATAGTACCAGAATCCGGGAAAGTTTTTGCTTCGGCTACAGAACGCACGCAGAACTGGAAC 779
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 725 ATAGTACCAGAATCCGGGAAGGTTTTCGCTTCGGCTACAGAACGCACGCAGAACTGGAAC 784
Query 780 GGTATTCAACAAGAGATCACCGGGAAAGTTCAGAGAAAACGTGCCTATGAGGCAACCGCG 839
|||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 785 GGTATTCAGCAAGAGATCACCGGGAAAGTTCAGAGAAAACGTGTATATGAAGCAACCGCG 844
Query 840 GTTGTTCGTATTTATGGAAACAATGTGACTACTGCTACAGTACAAGCTACTCTATGGGTC 899
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 845 GTTGTTCGTATTTATGGAAACAATGTGACAACAGCTACTGTACAAGCTACTCTATGGGTC 904
Query 900 CAGAATCCAAATCAACGTGATCAATACATTGGCATTTCCACTGTGCAGGCAACAGACAAA 959
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 905 CAAAATCCAAATCAACGTGATCAATACATTGGCATTTCCACTGTGCAAGCAACAGACAAA 964
Query 960 GAGTGGGTACATTTAAAAGGGAAGTTCCTCCTCAACGGTTCTGCGTCGCGGGTAGTCATT 1019
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 965 GAGTGGATACATTTGAAAGGGAAGTTCCTCCTCAACGGTTCTGCATCGCGGGTAGTCATT 1024
Query 1020 TACATTGAAGGTCCGCCTCCAGGAACAGATATTCTCCTCAATAGCTTCACTGTGAAACAC 1079
||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 1025 TACATCGAAGGTCCACCTCCAGGAACCGATATTCTTCTCAATAGCTTAACTGTAAAACAC 1084
Query 1080 GCCGAGAAAATTCCTCCTTCACCACCCCCGTCTATTGAGAATCCTGCATTTGGGGTAAAC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1085 GCCGAGAAAATTCCTCCTTCACCACCCCCGTCTATTGAGAATCCTGCATTTGGAGTAAAC 1144
Query 1140 ATACTCACAAATAGCCACTTAAATGATGATACGACCAACGGCTGGTTTCCATTAGGGAAC 1199
|||||||||||||| || |||| |||||||||||||||||| |||||| |||||||||||
Sbjct 1145 ATACTCACAAATAGTCATTTAAGTGATGATACGACCAACGGATGGTTTTCATTAGGGAAC 1204
Query 1200 TGCACGCTAAGTGTCGCGGAAGGCTCACCTCGAATCCTTCCTCCGATGGCAAGAGACTCG 1259
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1205 TGCACGCTAAGTGTGGCGGAAGGGTCACCTCGGATCCTTCCTCCGATGGCAAGAGACTCG 1264
Query 1260 CTTGGCCCACGCGAGCCTCTAAGTGGCCGCTATATACTCGCGACTAACCGAACACAGACA 1319
||||| ||| ||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1265 CTTGGAGCACACGAGCGTCTAAGTGGCCGCTATATACTTGTGACTAACCGAACACAGACA 1324
Query 1320 TGGATGGGTCCAGCACAAATGATCACTGATAAACTTAAGCTTTTCTTGACATACCAAATA 1379
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1325 TGGATGGGTCCAGCACAAATGATCACTGATAAACTTAAGCTTTTCTTGACGTACCAAATA 1384
Query 1380 TCAGTTTGGGTCAAAGTCGGTTATGGCATTAATAGTCCACAAAATGTTAATGTCGCACTT 1439
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1385 TCAGTTTGGGTCAAAGTTGGTTCTGGCATTAATAGTCCGCAAAATGTTAATGTCGCACTT 1444
Query 1440 GGTATCGATGGCCAATGGGTAAACGGAGGACAAGTCGAGATCAACAATGATAGATGGCAT 1499
||||||||| ||||||||||||| |||||||| || ||||||||| ||||||||||||||
Sbjct 1445 GGTATCGATAGCCAATGGGTAAATGGAGGACAGGTAGAGATCAACGATGATAGATGGCAT 1504
Query 1500 GAAGTTGGCGGTTCTTTCCGAATCGAGAAGCAGCCATCTAAGGCTTTGGTTTATGTTCAA 1559
||| ||||||||||||| ||||| |||||| | |||||||||||||||||||| ||||||
Sbjct 1505 GAAATTGGCGGTTCTTTTCGAATTGAGAAGAACCCATCTAAGGCTTTGGTTTACGTTCAA 1564
Query 1560 GGCCCTTCTTCCGGCATTGATCTAATGGTTGCTGGATTGCAGA-TTTTCCCGGTCGATCG 1618
||||||||||||||||||||||| ||||| || |||||||||| ||||||| ||||||||
Sbjct 1565 GGCCCTTCTTCCGGCATTGATCTCATGGTCGCGGGATTGCAGATTTTTCCC-GTCGATCG 1623
Query 1619 ACTTGCGAGAATCAAACATTTGAAAAGACAATGTGACAAGATCCGTAAGCGCGATGTTAT 1678
||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1624 ACTCGCGAGAATAAAACATTTGAAAAGACAATGTGACAAGATCCGTAAGCGTGACGTTAT 1683
Query 1679 CCTCAAATTTTCTGGTGTTGATTCTAGCAAATTGTCTGGAGCTACG-GTTATAGTTCGAC 1737
|||||| ||| |||||||||||||||||||||| |||||||||| | |||| ||||||||
Sbjct 1684 CCTCAAGTTTGCTGGTGTTGATTCTAGCAAATTTTCTGGAGCTA-GTGTTAGAGTTCGAC 1742
Query 1738 AAATAAGAAACAGCTTCCCGGTGGGGACTTGCATAAGCAGATCAAATATAGATAACGAAG 1797
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1743 AGATAAGAAATAGCTTCCCGGTGGGGACTTGCATTAGCAGATCAAATATAGATAACGAAG 1802
Query 1798 ATTTCGTCGATTTCTTCTTGAAGAACTTTAATTGGGCGGTTTTCGCTAACGAATTGAAAT 1857
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 ATTTCGTCGATTTCTTCTTAAAGAACTTTAATTGGGCGGTTTTCGCTAACGAATTGAAAT 1862
Query 1858 GGTACTGGACGGAACCAGAACAAGGGAAGCTTAATTACCAAGACGCAGATGATATGCTCA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 GGTACTGGACGGAACCAGAACAAGGGAAGCTTAATTACCAAGACGCAGATGATATGCTCA 1922
Query 1918 ACTTGTGTAATAGCAACAACATAGAAACAAGAGGACATTGTATCTTTTGGGAAGTTCAAG 1977
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 ACTTGTGCAGTAGCAACAACATAGAAACAAGAGGACATTGTATCTTTTGGGAAGTTCAAG 1982
Query 1978 CAACTGTTCAGCAATGGATCCAAAACATGAACCAAACCGACTTAAATAACGCGGTCCAAA 2037
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 1983 CAACTGTTCAGCAATGGATCCAAAATATGAACCAAACCGACTTAAACAACGCGGTGCAAA 2042
Query 2038 ACCGCCTAACCGATCTTCTAAACCGGTACAAGGGGAAATTCAAACATTACGACGTGAACA 2097
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2043 ACCGCCTAACCGATCTTCTAAACCGGTACAAGGGAAAATTCAAACATTACGACGTGAACA 2102
Query 2098 ATGAGATGTTACACGGATCATTCTATCAAGACAAGCTAGGAAAAGACATAAGGGTCAACA 2157
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || |||||||
Sbjct 2103 ATGAGATGTTACATGGATCATTCTACCAAGATAAGCTAGGCAAAGACATTAGAGTCAACA 2162
Query 2158 TGTTCAAGACCGCGCACCAACTAGACCCTTCTGCGACATTGTTCGTGAACGACTACCATG 2217
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2163 TGTTCAAAACCGCGCACCAACTAGACCCATCTGCGACATTGTTTGTGAACGACTACCACA 2222
Query 2218 TAGAAGACGGGTGTGACCCAAAATCCTGCCCTGAAAAGTACACGGAACTCATTCTTGACC 2277
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 2223 TAGAAGACGGGTGTGACCCAAAATCCTGCCCCGAAAAGTACACGGAACAGATTCTTGACT 2282
Query 2278 TGCAAGAAAAGGGTGCGCCAGTAGGCGGAATCGGGATTCAGGGCCATATTGATAGTCCAG 2337
||||||||||||||||||| ||||| |||||||||||||| |||||||| || ||||| |
Sbjct 2283 TGCAAGAAAAGGGTGCGCCGGTAGGAGGAATCGGGATTCAAGGCCATATCGACAGTCCGG 2342
Query 2338 TAGGTCCAATCGTATGTTCAGCTCTAGACAAACTAGGAATCCTCGGTTTACCGATATGGT 2397
| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 2343 TGGGTCCAATTGTATGTTCAGCCCTAGACAAACTAGGAATTCTCGGTTTACCAATATGGT 2402
Query 2398 TCACGGAAACGGATGTGTCCTCTGTCAATGAGCACATAAGGGCAGATGATTTAGAAGTAA 2457
|||| ||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2403 TCACAGAATTGGATGTCTCCTCGGTCAATGAGCACATAAGGGCAGATGATTTGGAAGTAA 2462
Query 2458 TGATGTGGGAAGCTTTCGGACATCCGGCGGTCGAAGGTATAATGTTATGGGGATTTTGGG 2517
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2463 TGATGTGGGAAGCTTTTGGACATCCCGCGGTGGAAGGTATAATGTTATGGGGATTTTGGG 2522
Query 2518 AATTGTTCATGAGCAGAGACAACTCTCATTTGGTGAATGCAGAAGGAGATGTTAATGAAG 2577
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2523 AGTTGTTTATGAGCAGAGACAACTCTCATTTGGTGAATGCAGAAGGAGATGTTAATGAAG 2582
Query 2578 CTGGCAAAAGGTTTTTGGCTGTGAAAAAAGATTGGCTCTCTCATGCCAATGGACATGTTG 2637
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 2583 CTGGTAAAAGGTTTTTGGCTGTGAAAAAAGATTGGCTCTCTCATGCTAATGGACATATTG 2642
Query 2638 ACCAAAACGGTGCGTTTCCGTTTAGAGGGTATAATGGAAACTATGCCATTGAAGTGATTA 2697
| ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 2643 ATCAAAACGGTGCGTTTCCGTTTAGAGGGTATAGTGGAAATTATGCCGTTGAAGTGATTA 2702
Query 2698 CTACTTCATCTACTAAGGTTCTAAAAACGTTTGTTGTTGAAAAGGAAGATTCGTCTCAGG 2757
|||||||||||| ||||||||| || ||||||| |||||| |||||||||||||||||||
Sbjct 2703 CTACTTCATCTAGTAAGGTTCTGAAGACGTTTGGTGTTGATAAGGAAGATTCGTCTCAGG 2762
Query 2758 TTATTACTGTTGATCTTCAAGGGTTGTGAT-GCTTTTGTGTTGTACATGTGTTCATGTAT 2816
|||||||||||||||||||||| ||||||| | | | ||||||||||| | | |
Sbjct 2763 TTATTACTGTTGATCTTCAAGGTTTGTGATTG-TGACGC-TTGTACATGTG--C-T--A- 2814
Query 2817 GTATGTATGTCTAGATTTAGAATTTGCTGAAACTGTGGTGTTTGTTTATTCAAAACaaaa 2876
|||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||
Sbjct 2815 --ATGTATGTCTAGATTTCCAGTTTGCTGAAACTGTGGTGTTTATTTATTGAAAACAAAA 2872
Query 2877 aaaaaGTCTCT 2887
||||||||||
Sbjct 2873 TAAAAGTCTCT 2883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143477456980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5