BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475417
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58070.1 | Symbols: | unknown protein; Has 286 Blast hits t... 1591 0.0
> AT1G58070.1 | Symbols: | unknown protein; Has 286 Blast hits
to 266 proteins in 81 species: Archae - 2; Bacteria - 25; Metazoa
- 90; Fungi - 19; Plants - 78; Viruses - 4; Other Eukaryotes
- 68 (source: NCBI BLink). | chr1:21502905-21504075
FORWARD LENGTH=1171
Length=1171
Score = 1591 bits (861), Expect = 0.0
Identities = 1076/1177 (91%), Gaps = 25/1177 (2%)
Strand=Plus/Plus
Query 1 GATTCTACCCAACAAACCAACAATACC-AATAC----C-TTCTTCTCTCTCTACCGTTCC 54
||||| ||||||||||||| ||||||| ||||| | ||||||||| |||| |||||
Sbjct 1 GATTCCACCCAACAAACCAGCAATACCAAATACAATACATTCTTCTCTATCTATAGTTCC 60
Query 55 TCCATGGATATAGACA-AGATGGAAGGAAATAACCAAGTAGAGCAGCATCATGTCGACAC 113
|||||||||||||| | |||||||||||||||| ||||| ||| | ||||||||||||||
Sbjct 61 TCCATGGATATAGA-AGAGATGGAAGGAAATAATCAAGTGGAGGAACATCATGTCGACAC 119
Query 114 TTCACGTCCTTTTAGCTCGGTAAAAGAAGCTGTTGCCATATTTGGCCAACGGATTATGCT 173
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCTCGTCCTTTTAGCTCTGTTAAAGAAGCTGTTGCCATATTTGGCCAACGGATTATGCT 179
Query 174 ACCGGTACAAACTCATACCTTGAACTCTAAACCGGTAAGTCCTA-T--TGCTAATCGTAG 230
||||||||||||||||||| ||||||||||| ||| |||||||| | ||||| ||||||
Sbjct 180 ACCGGTACAAACTCATACCATGAACTCTAAATCGGCAAGTCCTATTGCTGCTAGTCGTAG 239
Query 231 CATCAGCCAGACCGATAAACCAAGAAGTCCTGGACTCAGCCAGACTGCTAAACCGGTAAG 290
||||| ||||| || |||||||||||| ||||||||||||||||| | |||| |||||
Sbjct 240 CATCAACCAGAACGCTAAACCAAGAAGCCCTGGACTCAGCCAGACCGTTAAATTGGTAAT 299
Query 291 TCCTACTGCTAGTCCTAAAATCAGCCAGACTGCTAAACTGGTAAGTCCTATTGCAAGTCC 350
||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 300 TCCTACTGCTAGTCCTAGCATCAGCCAGACTGCTAAATTGGTAAGTCCTATTGCTAGTCC 359
Query 351 TAACATCAGCCAGACTGCTTCGTCA---TCTTCTCCATGGAAGCAACGCTCCTTGTTGCC 407
|| ||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 360 TAGCATAAGCCAGACCGCTTCTTCATCTTCTTCTCCATGGAAGCAACGCTCCTTGTTGCC 419
Query 408 CTCTTCTCCTCAAGGTCCAAAAGAGGAGATCATGGATGTTTTGAAGAAGCTTGAAGCTGA 467
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 420 CCCTTCTCCTCAAGGTCCAAAAGAAGAGATCATGGATGTGTTGAAGAAGCTTGAAGCCGA 479
Query 468 GATAACGGAAACAAAGACAGAGGTGAAGATGTTGAAGGAGAGAGAATCAGAGACAGAGGT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATAACGGAAACAAAGACAGAGGTGAAGATGTTGAAGGAGAGAGAATCAGAGACAGAGGT 539
Query 528 GGCTTTGGCTACTTTAAATGCCGAGCTACATAAAAACATGTCAAAGATGGCTAAAGCCGA 587
||||||||||||||||| || ||||||||||| |||| ||||||||| || ||||||||
Sbjct 540 TGCTTTGGCTACTTTAAACGCAGAGCTACATAAGAACAAGTCAAAGATAGCGAAAGCCGA 599
Query 588 GGCTGATGCTGCAGGGAAGAGCGCGGCAGCCATGGAA-AAATCAGTTAGATTCAAGGACA 646
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 600 AGCTGATGCTGCAGGGAAGAGCGCGGCAGCCATG-ACGAAATCAGTTAGCTTCAAGGACA 658
Query 647 CACAAGAGAAGGAAAATAGAGAGGACCAGAGGAGGAAAGAGCTGATGAGGAGGATGCAGA 706
|| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 CAAAAGAGAAGGAAAATGGAGAGGACCAGAGGAGGAAAGAGCTGATGAGGAAGATGCAGA 718
Query 707 AGGAGTATCCTTCATTGGCTCAGATACTTGACAGTAACAAAGGAGACAGAGATGGGTATT 766
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 AGGAGTATCCTTCATTGGCTCAGATACTTGACAGTAACAAAGGAAACAGAGATGGGTATT 778
Query 767 TTGCAaagactaagaagacgaagaagaagaagaaACCTATCATTCCTCTGGTGGGAGATT 826
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 779 TTGCGAACACTAAGAAGACGAAGAAGAAGAAGAAACCTATCATTCCTCTTGTGGGAGATT 838
Query 827 TCTTCTTCTTCAGGAAGAAGGGGTCTGCAACTGAAATTTCTGGACCTCTTTACACCACCT 886
|||||||||||| |||||| || ||| | ||||||| ||||||||||||||||| ||||
Sbjct 839 TCTTCTTCTTCAAGAAGAAAGGTTCTTCGCCTGAAATATCTGGACCTCTTTACACTACCT 898
Query 887 CTTCCACCCTGCACTTTTAGCTGATACACCCAAGATCATGTACTCTGCAAGtgtatatat 946
||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||
Sbjct 899 CTTCCACCCTGCACTTTTAACTGATATACCCAAGATCATGTACCCTGCAAGTGTATATAT 958
Query 947 atgtatatgtatatatgtatgcacatcaatattcgtaatatctatgtatgtatgtgtttt 1006
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGTATATGTAT----GTATGCACATCAATATTCGTAATATCTATGTATGTATGTGTTTT 1014
Query 1007 tgtgtg--tgtgt--gcgtgtgagtgtattctttatttgtttgtttgtttgtttctttgt 1062
||||| ||||| | ||||||| ||||||||||||||||||| | ||| | |||||||
Sbjct 1015 CGTGTGAGTGTGTTTGTGTGTGAGCGTATTCTTTATTTGTTTGTCTCTTTCTCTCTTTGT 1074
Query 1063 ttggattttgAGTGCAAACCATCAGCGTGTGTTCTCCCCTCTCCTATAACAATTACCTGT 1122
||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1075 TTGGATTTTGAGTCCAAACCATCAGCGTGTGTTC-CCCCTCTACTGTAACAATTACCTGT 1133
Query 1123 CAACTATTAGATTGTGAATATACAATGTTACTCTACT 1159
||||||| |||||||||||||||||||||||||||||
Sbjct 1134 CAACTATCAGATTGTGAATATACAATGTTACTCTACT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5