BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475419
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58100.1 | Symbols: | TCP family transcription factor | ch... 2135 0.0
> AT1G58100.1 | Symbols: | TCP family transcription factor |
chr1:21512384-21514013 REVERSE LENGTH=1630
Length=1630
Score = 2135 bits (1156), Expect = 0.0
Identities = 1431/1554 (92%), Gaps = 58/1554 (4%)
Strand=Plus/Plus
Query 1 AAACTTGAAGGCAACAATCAGACCTTCCATGGCCGTTTCTTCATCTTCCACCAAACCCTA 60
|||||||||||| |||||| || ||||||||||||||||||| |||| ||||||||||||
Sbjct 28 AAACTTGAAGGCGACAATCGGAGCTTCCATGGCCGTTTCTTCCTCTTTCACCAAACCCTA 87
Query 61 ATTTCAATCTCATCTTCTTTTCCACTTCTTTCACACCGGAAAAT-G--------G--AT- 108
|||||||| |||||||||||||| |||||||| ||||||||||| | | ||
Sbjct 88 ATTTCAATTTCATCTTCTTTTCC-CTTCTTTCTCACCGGAAAATGGATCTCTCCGACATC 146
Query 109 CG-----A-AACAACGACACCGCCGCCGT---CACCGGAGGAGGAGCAAGACAACTAGTT 159
|| | |||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 147 CGAAACAACAACAACGACACCGCCGCCGTCGCCACCGGAGGAGGAGCAAGACAGCTAGTT 206
Query 160 GACGCATCTCTCTCAATCGTTCCCAGATCTACACCAT-TAGAAGACTCATCACTCGCAAC 218
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 207 GACGCATCTCTCTCAATCGTTCCCAGATCTACACC-TCCCGAAGACTCAACACTCGCAAC 265
Query 219 AACCTCATCTAC-G--A---CGACTACAACGAAGCGGTCGACGAAAGACCGTCACACGAA 272
|||||||||||| | | |||||||||||||||||||||| |||||||||||||||||
Sbjct 266 AACCTCATCTACGGCAACGGCGACTACAACGAAGCGGTCGACTAAAGACCGTCACACGAA 325
Query 273 AGTCGACGGAAGAGGACGGCGGATTCGTATGCCGGCGCTTTGTGCAGCTAGGGTTTTTCA 332
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 326 AGTCGACGGAAGAGGACGTCGGATTCGTATGCCGGCGCTATGTGCAGCTAGAGTTTTTCA 385
Query 333 GTTAACGAGAGAGTTAGGTCATAAATCTGATGGTGAAACTATTGAATGGCTTCTTCAACA 392
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 386 GTTAACGAGAGAGTTAGGTCATAAATCCGATGGTGAAACTATTGAATGGCTTCTTCAACA 445
Query 393 AGCTGAGCCAGCGATTGTTGCTGCTACAGGTACAGGAACTATTCCGGCGAACTTTTCTAC 452
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 446 AGCTGAGCCAGCTATTGTTGCTGCTACAGGTACAGGAACTATTCCGGCGAACTTCTCTAC 505
Query 453 TTTAAGTGTTTCTTTACGAAGTAGCGGTTCGACTCTCTCTGCTCCGCCGTCGAAATCGGT 512
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 506 TTTAAGTGTTTCGTTACGAAGTAGTGGATCGACTCTCTCTGCTCCGCCGTCGAAATCGGT 565
Query 513 GCCGCTCTACGGTGCTCTTGGATTGA--C-TCATCAGTATGATGAACAAGGAGGCGGCGG 569
|||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 566 GCCGCTTTACGGTGCTCTTGGATTGACTCATCATCAGTATGATGAACAAGGAGGCGGCGG 625
Query 570 TGTTTTTGCGGCTCATACGACGCCGCTTTTAGGGTTTCATCATCACCTTCAACAGCAACA 629
||| ||||| ||||||||| ||||||||||||||||||||||||| |||| | | | ||
Sbjct 626 TGTGTTTGCTGCTCATACGTCGCCGCTTTTAGGGTTTCATCATCAGCTTC-A-A-C-AC- 680
Query 630 ACACCATCATCAGAATCAGAATCAAGATCCGGTGGAAACAATTCCTGAAGGTGAGAATTT 689
||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 681 -CACCAGAACCAGAATCAGAATCAAGATCCGGTGGAAACTATTCCTGAAGGTGAGAATTT 739
Query 690 CTCTAGGAAACGGTATAGATCGGTTGATTTGTCTAAAGAAAACGATGATCGGAAACAGAA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CTCTAGGAAACGGTATAGATCGGTTGATTTGTCTAAAGAAAACGATGATCGGAAACAGAA 799
Query 750 CGAGAATAAGTCTTTGAAAGAAAGTGAAACGCCGGGTCCTGCGGCGGCGCCGATGTGGGC 809
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 800 CGAGAATAAATCTTTGAAAGAAAGTGAAACGTCGGGTCCTACGGCGGCGCCGATGTGGGC 859
Query 810 GGTTGCTCCGCCGAGTAGGACTGGTGCTGCAAATACTTTTTGGATGCTTCCGGTACCGAC 869
|||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 860 GGTTGCGCCGCCGAGTAGGTCTGGTGCTGGGAACACTTTTTGGATGCTTCCGGTACCGAC 919
Query 870 AACGACCGGTAATCAAATGGAGAGTAGTAGTAACAATACCACCACCGCAGGCCACCGTGC 929
|||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||
Sbjct 920 AACGGCCGGTAATCAAATGGAGAGTAGTAGCAACAATAACACCGCCGCAGGCCACCGTGC 979
Query 930 TCCTCCTATGTGGCCATTTGTAAACTCTGCTGGCGGAGGAGCGGGTGGCGGAGGCGGAGC 989
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 980 TCCTCCTATGTGGCCATTTGTGAACTCTGCTGGAGGAGGAGCGGGAGGTGGAGGCGGAGC 1039
Query 990 AGCGACTCATTTTATGGCGGGAACGGGGTTTAGTTTTCCGATGGATCAGTACAGAGGAAG 1049
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGCGACTCACTTTATGGCGGGAACGGGGTTTAGTTTTCCGATGGATCAGTACAGAGGAAG 1099
Query 1050 TCCACTTCAATTAGGTTCGTTTCTAGCTCAGCCGCAGCCGACTCAGAACTTAGGTCTAAG 1109
||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1100 TCCACTTCAGTTAGGTTCTTTTTTAGCTCAGCCGCAGCCGACTCAGAACTTAGGACTAAG 1159
Query 1110 TATGCCGGACTCGAATCTTGGGATGTTAGCCGCTTTGAACGCGGCTTATTCGAGAGGCGG 1169
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1160 TATGCCGGACTCGAATCTCGGGATGTTAGCCGCTTTGAACTCGGCTTATTCAAGAGGCGG 1219
Query 1170 AAACGCAAACGCGGATGCGGAACAAGCGAACAATGCGGTGGAGCATCAAGAGAAGCAGCA 1229
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 AAACGCAAACGCGAATGCGGAACAAGCGAACAATGCGGTGGAGCATCAAGAGAAGCAGCA 1279
Query 1230 ACAGAGTGATCATGATGATGATAGTAGAGAGGAGAACTCAAATAGCTCTGAGTGAGTGAT 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 ACAGAGTGATCATGATGATGATAGTAGAGAGGAGAACTCAAATAGCTCTGAGTGAGTGAT 1339
Query 1290 GTAAACTAATCTTGTGAAAGCATTGAATTTGGTAAGAAATTGAATTTAA-GCGTTTGTAG 1348
||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct 1340 GTAAACTAATCTTGTGAAATCATTGAATGTGGTAAGAAATTGA-TTTAAAGCGTTTGTAG 1398
Query 1349 CGGTTTGGTTGATTGttttttttgtgagagtttgtgtgttgttgtttag-ag-----a-a 1401
||||||||||||||||||| || |||||| ||||||||||||||||||| || | |
Sbjct 1399 CGGTTTGGTTGATTGTTTTATT-GTGAGATTTTGTGTGTTGTTGTTTAGTAGTGTTTAGA 1457
Query 1402 ---gaa---tttgtgtgtgaaggaattgttaggtttgGGTCCAAATGGACTCTTGTGGGT 1455
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1458 CAAGAACAATTTATGTGTGAAGGAATTGTTAGGTTTGGGTCCAAATGGACTCTCATGGGT 1517
Query 1456 AGAGTATGTTTTCAATGTATAGAAGGAATGATAGT-TTT-C-ATTGTTGAGTTT 1506
|||| |||||||||||||||||||||||||||||| ||| | ||| || |||||
Sbjct 1518 AGAGAATGTTTTCAATGTATAGAAGGAATGATAGTCTTTTCGATTTTTCAGTTT 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74798812050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5