BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475425
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58170.1 | Symbols: | Disease resistance-responsive (dirige... 867 0.0
> AT1G58170.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr1:21536128-21536836 FORWARD
LENGTH=709
Length=709
Score = 867 bits (469), Expect = 0.0
Identities = 586/641 (91%), Gaps = 14/641 (2%)
Strand=Plus/Plus
Query 1 CTCTTCAGTCTCCACCATGGCCAGTTTTCTCTCCTTGTTTATTGTTTCTTCTCTAACACT 60
|||| |||||||||| |||| ||||||||||||||| ||| || ||||||||| ||||||
Sbjct 45 CTCTCCAGTCTCCACTATGGGCAGTTTTCTCTCCTTCTTTCTTATTTCTTCTCGAACACT 104
Query 61 AGCCCTCGTCCTAATTTCCGTCACA-G-G--A-----GAATCTAATTTCTTGCATCACAA 111
||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 105 AGCCCTCGTCCTAATTTCCGTCACAGGAGAAACCCTTGAATCTAATTTCTTGCATCACAA 164
Query 112 GAAAGAGAAACTAACTCATTTCAGAGTTTACTGGCACGATATCGTAACCGGCCAAGATCC 171
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 165 GAAAGAGAAACTAACTCATTTCAGAGTATACTGGCACGATATTGTAACCGGCCAAGATTC 224
Query 172 ATCTTCAGTGACAATCATGAATCCTCCGAAAAACTACACGGGGCCAACGGG-TTTCGGTC 230
||||| ||| |||||||||||||||||||||| ||||||||| ||||||| ||| ||||
Sbjct 225 GTCTTCGGTGTCAATCATGAATCCTCCGAAAAAATACACGGGGGCAACGGGCTTT-GGTC 283
Query 231 GCATGCGTATGATTGATAACCCTTTAACGCTCACCCCAATATTAAGCTCCAAAATGGTGG 290
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 284 TCATGCGTATGATTGATAACCCTTTAACGCTCACACCAAAATTAAGCTCCAAAATGGTGG 343
Query 291 GAAGGGCACAAGGGTTTTATGCAGTCACATCTAAAGAAGAGATAGGATTATTGATGGCTA 350
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 344 GAAGGGCACAAGGGTTTTATGCAGGCACATCTAAAGAAGAAATAGGATTATTGATGGCTA 403
Query 351 TGAATTTTGCGATTCTTGATGGGAAATACAATGGAAGCACGATTACAGTTTTCGGAAGAA 410
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 404 TGAATTTTGCGATTCTTGATGGGAAATACAATGGAAGCACGATCACAGTGTTAGGAAGAA 463
Query 411 ACTCGGTGTTTGATAAGGTGAGGGAGATGCCAGTGATCGGAGGGAGTGGACTTTTCCGAT 470
| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 464 ATTCAGTGTTTGATAAGGTGAGGGAGATGCCAGTGATTGGAGGAAGTGGACTTTTCCGAT 523
Query 471 TTGCTAGAGGTTTTGTTGAAGCAAGAACACATGAGTTTAATCTTAAGACAGGGAACGCCA 530
||||||| |||| |||| |||| || ||||||||||||||||| ||||||||||||||||
Sbjct 524 TTGCTAGGGGTTATGTTCAAGCTAGCACACATGAGTTTAATCTCAAGACAGGGAACGCCA 583
Query 531 TCGTCGAGTATAATTGTTATGTTTTGCACTATTGATTTGTCATTTCTTGTTTATTAGTAT 590
|||| ||||||||||||||| |||||||||| | ||||||||||||| |||||||| | |
Sbjct 584 TCGTTGAGTATAATTGTTATCTTTTGCACTACTAATTTGTCATTTCTAGTTTATTA-T-T 641
Query 591 TATTTATTGTATGGTTTTTCATCTCCACATAGTGGTGGTGG 631
|||||||||| |||||||| ||| ||||||||||||||||
Sbjct 642 -ATTTATTGTAAGGTTTTTCTTCTTCACATAGTGGTGGTGG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5