BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475428
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58180.2 | Symbols: ATBCA6, BCA6 | beta carbonic anhydrase 6... 1502 0.0
> AT1G58180.2 | Symbols: ATBCA6, BCA6 | beta carbonic anhydrase
6 | chr1:21537852-21539914 REVERSE LENGTH=1234
Length=1234
Score = 1502 bits (813), Expect = 0.0
Identities = 908/954 (95%), Gaps = 6/954 (1%)
Strand=Plus/Plus
Query 139 CAAAAATGGCGTTTACACTAGGTCGAAGAGCTCGTCGTCTAGTCTCTGCAACATCGGTTC 198
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 199 CAAAAATGGCGTTTACACTAGGTGGAAGAGCTCGTCGTCTAGTCTCTGCAACATCAGTTC 258
Query 199 ATCAAAATGGTTGTTTACACAAACTGCAACAAACGGGATCGGATCGGTTTCAGCTTGGTG 258
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 259 ATCAAAATGGTTGCTTACACAAACTGCAACAAATTGGATCGGATCGGTTTCAGCTTGGTG 318
Query 259 AAGCAAAAGCAATAAGATTATTACCCAGGAGGACGAACATGGTTCAAGAATTAGGAAT-T 317
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 319 AAGCAAAAGCAATAAGATTACTACCCAGGAGAACAAACATGGTTCAAGAATTAGGAATCA 378
Query 318 GGAGAAGAATTTATGGAGAGAAACAGAGAAACAGACAGAAGTTATGATTTTCTTGG-TGA 376
|| |||||||||||||| ||||||||||||||| | |||||||||||||| ||| |||
Sbjct 379 GG-GAAGAATTTATGGATCTAAACAGAGAAACAGAGACAAGTTATGATTTTC-TGGATGA 436
Query 377 GATGAGACAGAGATTTATGAGATTCAAGAGACAAAAGTATCTACCCGAGATAGAAAAGTT 436
|||||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 437 AATGAGACACAGATTTCTGAAATTCAAGAGACAAAAGTATCTACCGGAGATAGAAAAGTT 496
Query 437 TCAAGCTTTGGCCATAGCTCAATCACCAAAGGTTATGGTGATAGGATGTGCAGATTCAAG 496
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 497 TAAAGCTTTGGCCATAGCTCAATCACCAAAGGTAATGGTGATAGGATGTGCAGATTCAAG 556
Query 497 GGTGTGTCCATCTTATGTACTAGGATTTCAACCTGGTGAAGCTTTTACTATACGAAATGT 556
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 557 GGTATGTCCATCTTATGTACTAGGATTTCAACCTGGTGAAGCTTTTACTATCCGAAATGT 616
Query 557 CGCTAATCTCGTTACCCCGGTCCAGAATGGACCAACAGAAACCAACTCGGCTCTTGAGTT 616
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 617 CGCCAATCTCGTTACCCCGGTTCAGAATGGACCAACAGAAACCAACTCGGCTCTTGAGTT 676
Query 617 TGCGGTCACCACTCTTCAGGTTGAGAACATTATAGTAATGGGTCACAGCAATTGTGGAGG 676
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 677 TGCGGTCACCACTCTTCAGGTTGAGAACATTATAGTTATGGGTCATAGCAATTGTGGAGG 736
Query 677 AATTGCAGCACTTATGAGTCATCAAAACCACCAAGGGCAACACTCAAGTTTAGTAGAGAG 736
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 737 AATTGCAGCACTTATGAGTCATCAAAACCACCAAGGGCAACACTCTAGTTTAGTAGAAAG 796
Query 737 ATGGGTTATGAATGGGAAAGCCGCTAAGTTAAGAACACAATTAGCTTCGTCACATTTATC 796
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 797 GTGGGTTATGAATGGGAAAGCCGCTAAGTTAAGAACACAATTAGCTTCATCACATTTATC 856
Query 797 CTTTGATGAACAATGCAGAAACTGTGAGAAGGAATCTATAAAGGATTCTGTGATGAATTT 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CTTTGATGAACAATGCAGAAACTGTGAGAAGGAATCTATAAAGGATTCTGTGATGAATTT 916
Query 857 GATAAGTTATTCATGGATAAGAGATAGAGTAAAGACAGGTGAAGTCAAGATTCATGGATG 916
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 917 GATAACTTATTCATGGATAAGAGATAGAGTAAAGAGAGGTGAAGTCAAGATTCATGGATG 976
Query 917 TTATTACAATTTGTCAGATTGTAGTCTTGAGAAGTGGAGACTAAGTTCAGACAAGGA-TA 975
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 977 TTATTACAATTTGTCAGATTGTAGTCTTGAGAAGTGGAGATTAAGTTCAGACAAG-ACTA 1035
Query 976 ACAATGGATTCCATATTTCAGACAGAGAAATATGGAGTTGAGTAAATATAGAACAATCTT 1035
|| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 1036 ACTATGGATTCTATATTTCAGACAGAGAGATATGGAGTTGAGTAAATATTGAACAATCCT 1095
Query 1036 CAGTTCTAATATTCAGATGTATCTTTGTACATATGAAATGATATTTACACAATT 1089
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1096 CAGTTCTAATATTCAGATGTATCTTTGTACATACGAAATGATATTTACACAATT 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5