BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475431
Length=2492
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548187-21553... 3500 0.0
> AT1G58200.1 | Symbols: MSL3 | MSCS-like 3 | chr1:21548187-21553085
REVERSE LENGTH=2517
Length=2517
Score = 3500 bits (1895), Expect = 0.0
Identities = 2274/2447 (93%), Gaps = 65/2447 (3%)
Strand=Plus/Plus
Query 84 TTGTAACAAAGAAAGAAACTAATCAACaagaagaagaagaagaagaagaagaagaagCTC 143
||| ||||||||||||||||||| | | || |||| |||| || |||||||||||||
Sbjct 95 TTG-AACAAAGAAAGAAACTAAT---C-A-AA-AAGACGAAG-AG--GAAGAAGAAGCTC 144
Query 144 ACCGTTTC--TCTC-CGATTCTATCCACTGATCTTCTCCGATTGC-TACTTGCTTCTTTT 199
|||||||| |||| | ||| || ||||||||||||||||||||| | ||||||||| |
Sbjct 145 ACCGTTTCTATCTCTC-ATTTTAACCACTGATCTTCTCCGATTGCGT-CTTGCTTCTCGT 202
Query 200 TGTTTGCTTCCGATCTCTCTC--GA-TTTCTCAATTCCGTACGGAGTAGGTTAATTTTGT 256
|||||||||||||||||||| || |||||||||| ||||| | | | ||||||| |||
Sbjct 203 CGTTTGCTTCCGATCTCTCTCTGGATTTTCTCAATTTCGTAC-G-G-A-GTTAATTGTGT 258
Query 257 ATAAAGGAGATTAGTTTATCATTGTTTTGTACATTTGGGATGATGATGCGTACTGTCT-C 315
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 259 ATAAAGGAGTTTAGTTGATCATTGTTTTGTACATTTGGGATGATGATGCGTACTGT-TGC 317
Query 316 TTTGCCATTGTCTCATGATCTCAATGTTCATAAGATCCATGAAGCTTCTGGATACCATAA 375
||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 318 TTTACCATTGTCCCATGATCTGAATGTTCATAAGATCCATGAAGCTTCTGGATTCCATAA 377
Query 376 TAGTGCAGCTGCTAAAAATCGTGTGTATCTGACTCGGACTGGTCTTTCATCATGTGCTAC 435
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 TAGTGCTGCTGGTAAAAATCGTGTGTATCTGACTCGGACTGGTCTTTCATCATGTGCCAC 437
Query 436 GAGACAAGACGTTTGGAGTCTTCAGCTTCTAGAGAGCTTTAGTGGTTCAAAAGTACCTGT 495
||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 438 GAGACAAGACGTTTGGAGTCTTCAGCTACTAGAGAGCTTGAGTGGTTCAATAGTACCTGT 497
Query 496 ATCATCTAGGTGTAATGCATTCGTTTGCCGGTCAGCTCTCTTTCCCGGGAATGGAAATGA 555
||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 498 ATCATCTAGGTGTAATGCATTTGTTTGCCGGTCAGCTCTCTCTCCTGGGAATGGAAATGA 557
Query 556 AGGCCCTATTCTTAAATCAACTGCAGTAATATTCACAAGGGCATATGATGCTTTACGCGG 615
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 558 AGGCCCTATTCTTAAATCAACTGCAGTAATATTCACAAGGGTATATGATGCTTTAGGTGG 617
Query 616 AAA---TCATTTAATGAAACTAATTCCAGCAGTTGGGATTCTTGCATTTGCTACATGGGG 672
||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 618 AAATCCTCATTTAGTGAAACTAATTCCAGCGGTTGGGATTCTTGCATTTGCTACATGGGG 677
Query 673 TCTTAGACCCCTTCTGCGCCTTGCCAGAGCTACCCTGTTTGAGAAGGGGAATGATGCAAA 732
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 678 TCTTAGACCCCTTCTGCGCCTTGCCAGAACTACCCTGTTTGAGAAGGGGAATGATGCAAA 737
Query 733 TTCACAGAAGAGTAGCACACAATACATTGTTGTGTCATATCTTCAGCCTTTGCTGCTTTG 792
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 738 TTCACAGAAGAGTAGCACGCAGTACATTGTTGTGTCATATCTTCAACCTTTGCTGCTTTG 797
Query 793 GAGCGGAGCTATCCTTCTATGCAGAACATTGGACCCAATAGTATTGCCTTCAAGTGCCAG 852
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 798 GAGCGGAGCAATCCTTTTATGCAGAACATTGGACCCAATAGTATTGCCTTCAAGTGCCGG 857
Query 853 CCAGGCTGTTAAACAGCGTCTTCTGACCTTTGCTCGGTCCATGTCAACGGTGTTGGCATT 912
||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 858 CCAGGCTATTAAACAGCGTCTTCTGATCTTTGCTCGGTCCATATCAACGGTGTTGGCATT 917
Query 913 TGCTTGCTGTTTATCAAGCCTACTTCAGCAGGTGCAGAAATTTTTTATGGAGACAAATAA 972
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TTCCTGCTGTTTATCAAGCCTACTTCAGCAGGTGCAGAAATTTTTTATGGAGACAAATAA 977
Query 973 TCCTGCTGATACCAGAAATATGGGTTTCAGTTTTGCTGGAAAAGCTGTTTACACTGCTGC 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TCCTGCTGATACCAGAAATATGGGTTTCAGTTTTGCTGGAAAAGCTGTTTACACTGCTGC 1037
Query 1033 GTGGGTTGCTGCTGCTTCATTGTTTATGGAGCTGTTGGGCTTCTCTACCCAAAAGTGGCT 1092
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1038 GTGGGTTGCTGCTGCTTCATTGTTTATGGAACTGTTAGGCTTCTCTACCCAAAAATGGCT 1097
Query 1093 AACGGCTGGGGGTCTGGGGACAGTACTGCTAACTCTTGCTGGTCGTGAGATACTTACAAA 1152
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1098 AACGGCTGGGGGTCTGGGGACAGTACTGCTAACTCTTGCTGGCCGTGAGATACTTACTAA 1157
Query 1153 CTTTCTTTCAAGCATTATGATTCATGCTACACGGCCCTTTGTTCTGAATGAGTGGATCCA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 CTTTCTTTCAAGCATTATGATTCATGCTACACGGCCCTTTGTTCTGAATGAGTGGATCCA 1217
Query 1213 GACCAAGATAGGAGGCTATGAAGTTTCTGGCACAGTAGAGCGTGTCGGTTGGTGGTCACC 1272
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1218 GACCAAGATAGGAGGCTATGAAGTTTCTGGCACAGTAGAGCAAGTCGGTTGGTGGTCACC 1277
Query 1273 TACAATTATCAGAGGTGATGACCGTGAAGCAGTTCATATTCCTAACCACCAGTTTAGTGT 1332
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1278 TACAATTATCAGAGGTGATGACCGGGAAGCAGTTCATATTCCTAACCACCAGTTCAGTGT 1337
Query 1333 AAATATTGTGAGAAATCTAACTCAGAAGACGCATTGGCGCATCAAAACACATCTTGCCAT 1392
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GAATATTGTGAGAAATCTCACTCAGAAGACGCATTGGCGCATCAAAACACATCTTGCCAT 1397
Query 1393 CAGTCATCTTGATGTCAGCAAAATTAATAATATCGTAGCTGATATGCGCAAGGTGTTGTC 1452
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1398 CAGTCATCTTGATGTCAGCAAAATTAATAATATCGTGGCTGATATGCGCAAGGTGTTGTC 1457
Query 1453 TAAAAATCCTCAAATCGAGCAGCAAAAAATACACAGAAGAGTCTTTTTGGAAGATATAGA 1512
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1458 TAAAAATCCTCAAATCGAGCAGCAAAAAATACACAGAAGAGTCTTTCTGGAGGATATAGA 1517
Query 1513 TCCAGAGAACCAAGCACTGAGGATCCTAATATCATGTTTTGTAAAGACTTCACGTTTTGA 1572
||||||||||||||| || ||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1518 TCCAGAGAACCAAGCCCTTAGGATTCTAATATCCTGTTTTGTCAAGACTTCACGTTTTGA 1577
Query 1573 AGAATACCTGTGCGTTAAGGAAGCAGTGCTCTTGGATCTTCTTACTGTTATTAGGCATCA 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AGAATACCTGTGCGTTAAGGAAGCAGTGCTCTTGGATCTTCTTACTGTTATTAGGCATCA 1637
Query 1633 CGGGGCACGTCTAGCAACTCCCATTAGAACAGTACAGAGGATGCGTAATGAGGCTGAGGT 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 CGGGGCACGTCTAGCAACTCCCATTAGAACAGTACAGAGGATGCGTAATGAGGCTGAGGT 1697
Query 1693 GGACAGTGCAGGATTTTCAGACATCATTTTCAATCAAGCAGCGATGAACCGTCGATTCAT 1752
||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||| |||
Sbjct 1698 GGACACTGCAGGATTTTCAGACATCGTTTTCAATCAAGCAGCAATGAACCGCCGATACAT 1757
Query 1753 GCTGATTGAGCCTTCCTATAAAATAAACAGCGATGATAACTCAAAGTCTCCCTCACCCAG 1812
|||||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1758 GCTGATTGAGCCATCTTATAAAATCAACAGCGATGACAATTCAAAGTCTCCCTCACCCAG 1817
Query 1813 CCCAGGGCAAAAG--A----G---------------TGAAGAAAGGGACCTTCAAGAAGA 1851
||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1818 CCCAGGGCAAAAGTCACCCAGCCCAGGGCAAAAGAGTGAAGAAAGGGACCTTCAAGAAGA 1877
Query 1852 ACCATCGGAAACCAAGGCCGAAACAGAAAACAACGGATCAGCGTCAGTGCTGATTTCAAA 1911
||||||||||||||||||||||||||||||||||||||| | || | | | |||||||
Sbjct 1878 ACCATCGGAAACCAAGGCCGAAACAGAAAACAACGGATC-G-GT--GC-CGG-TTTCAAA 1931
Query 1912 TGCCAAAAAAGAGAAAC-AGAAAACGGCTCTTGGTTCCAACTCCAGTACAGGCACTAAGG 1970
||||||||| || |||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1932 TGCCAAAAAGGA-AAACCAGAAAGCGGCTCTTGGTTCCAACTCCAATACAGGCACTAAGG 1990
Query 1971 GTTCACCAACCTCAACATCCGACCAGCCAGTAGCACAAAAGTCAGAAGAAAAGAAGAAAG 2030
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 GTTCATCAACCTCAACATCTGACCAGCCAGTAGCACAAAAGTCAGAAGAAAAGAAGAAAG 2050
Query 2031 AGAGCGTGGGAGATTCAAATAAAGCAGAGAAGGATGAAGTTTATGATGACGAAGGTACAA 2090
|||||||||||||| || |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2051 AGAGCGTGGGAGATCCACATAAAGCAGAGAAGGATGAAGTTTCTGATGACGAAGCTACAA 2110
Query 2091 CAGAGCAGACATTGAAATCAAAAGCAAGACAAGTGA-CT-GAAAAGAGCAGTGGAGATTC 2148
|||||||||| ||||||||||||||| ||||| || | ||||| | || |||||| ||
Sbjct 2111 TAGAGCAGACACTGAAATCAAAAGCAAAACAAGGGAGCGAGAAAA-A-CAATGGAGAGTC 2168
Query 2149 GAAAGCTCGAGATGGTGGTGGGTCTGGTACAAGTTCTTTTCTGGAGGAGAACCTTGTTCT 2208
|||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 2169 GAAAGCTCGAGATGGTGGTGGGTCCGGTACTAGTTCTTTACTGGAGGAGAATCTTGTTCT 2228
Query 2209 GGGTGTTGCATTGGATGGCTCAAAACGTACACTCCCGATTGATGAAGAAGTCAAAGCATC 2268
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2229 TGGTGTTGCGTTGGATGGCTCAAAACGTACACTCCCGATTGATGAAGAACACAAAGCATC 2288
Query 2269 TGGTGCATTAATGGATTCTGAAGAACTTGGTATAGGATCAGAATGAGTAGACGGAGAAGA 2328
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2289 TGGTGCACTAATGGATTCAGAAGAACTTGGTATTGGATCAGAATGAGTAGACGGAGAAGA 2348
Query 2329 GGTACaaaaaaaTTTGTGTTCCAAGCAATTTAATGCATCTGTAGAAAGTAACAAACAGAA 2388
| || ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2349 GATATAAAGAAATTTGTGTTCTAAGCAATTTAATGCTTCTGTAGAAAGTAACAAACAGAA 2408
Query 2389 ATGGAGAAATGAGCGCGACTCT--GTTAAtttttttAATCGTAGAGGTTTGCGCCATTTC 2446
| |||||||||||||||||||| ||||||||| | || | |||||||||||||||||||
Sbjct 2409 ACGGAGAAATGAGCGCGACTCTCTGTTAATTTTGT-AAGCATAGAGGTTTGCGCCATTTC 2467
Query 2447 ATCTCTGTAAATAA-ACTAGCGATTCAAAAACTAAAAAGTAGTTTGT 2492
|||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2468 ATCTCTGTAAATAATACTAGCGATTCAAAAACTGAAAAGTAGTTTGT 2514
Score = 99.0 bits (53), Expect = 2e-19
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 21 ATTGGCGTATTTTAGATAGACACGTCAAAGCTCCTCCTCGCGCACGTTAGCTAACGTCAT 80
||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATTGGCGTATTTTAGATTGATACGTCAAAGCTCCTCCTCGCGCACGTTAGCTAAAGGAAT 60
Query 81 GTCTTGTA 88
||||||||
Sbjct 61 GTCTTGTA 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123661514495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5