BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475434

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G58225.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   638    0.0  


> AT1G58225.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 4 Blast hits to 4 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:21564111-21565171 FORWARD LENGTH=702
Length=702

 Score =  638 bits (345),  Expect = 0.0
 Identities = 422/459 (92%), Gaps = 6/459 (1%)
 Strand=Plus/Plus

Query  34   AGAGCTTAGTATCAAAATGAAAGCGAGATCAA-CTAAAGGAGGCTTGGTTGCAATATTGG  92
            |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct  79   AGAGCTTAGTATCAAAATGAAAGCGAGATCAAGC-AAAGGAGGTTTGGTTGCAATATTGG  137

Query  93   CTATAGTTGTTTATTGCTTCTTCGAGAATATGGATTGGAACTCGATCGATGTTTC-TCCT  151
            || |||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct  138  CTCTAGTTGTTTATTGCTTCTTCGAGAATATGGATGGGAACTCGATCGATGTTCCAT-CT  196

Query  152  TATGAACCTGTTGGAAGTTATTTTC-CTGGAGGTTTCTTTGCTCTCGACAGCAAAAACAA  210
            |||||||||||||||||||| || | ||||||||||||||||| |||| | |||| ||||
Sbjct  197  TATGAACCTGTTGGAAGTTA-TTCCACTGGAGGTTTCTTTGCTGTCGAAAACAAAGACAA  255

Query  211  GATGCTAAAATCGTTCCCATCTTATTACGAGTATCTCAAAAGATTCAATCTAGCCTCAGT  270
            |||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||
Sbjct  256  GATGCTAAAATCATTCCCATCTTATAATGAATATCTCAAAAGATTCAATCTAGCCTCAGT  315

Query  271  GGAAATTTGGCAAACAGTGAGAAACAAGTGTAGAGATGGTTTCATCACTTTGAGCATAAA  330
            ||||||||||||||| ||||||  ||||||||||||| |||||||| | |||||||||||
Sbjct  316  GGAAATTTGGCAAACGGTGAGACGCAAGTGTAGAGATAGTTTCATCTCCTTGAGCATAAA  375

Query  331  ATCATTGCACTTTTTCGTCTCAAAGTTTATGCAATTCAGATATTCAATATCAACCGCAAC  390
            ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| | |
Sbjct  376  ATCATTGCATTTTTTCGTCTCAAAGTTTACGCAGTTCAGATATTCAATATCAACCGTAGC  435

Query  391  TCCAATGAGTCGCTCGTGGACTTCTAGAATTATTTTCTGGGTAACATTGACTCGATCAGT  450
            |||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  436  TCCAACCAGTCGCTCGTGGACTTCTCGAATTATTTTCTGGGTAACATTGACTCGATCAGT  495

Query  451  CTCGTCCATGGCTAATGATACAGCTCTATGATTAATTTT  489
            |||||||||||| ||||||||| |||||||| || ||||
Sbjct  496  CTCGTCCATGGCCAATGATACAACTCTATGAATAGTTTT  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25920819852


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5