BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475442

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   658    0.0  
  AT3G44130.1 | Symbols:  | F-box and associated interaction doma...   185    2e-46
  AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like su...   165    3e-40


> AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Ribosomal protein S5 domain 2-like superfamily protein 
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; 
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI 
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453

 Score =  658 bits (356),  Expect = 0.0
 Identities = 402/424 (95%), Gaps = 3/424 (1%)
 Strand=Plus/Plus

Query  1    ATGGGATTCATTGAACTCTCTCGTTTATATTTTCAGGA-GATACAAAAGTTCTAGCTGCA  59
            ||||||| ||| ||||||||||||||||||||||| || ||||||||||||||| |||| 
Sbjct  32   ATGGGATACATGGAACTCTCTCGTTTATATTTTCA-GAGGATACAAAAGTTCTATCTGCG  90

Query  60   CAATACGGACCTAAAGCAGGAACGAAAAAGAACGAAAATGCTGAGAAGACTTGTTTTGAA  119
            |||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||||
Sbjct  91   CAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAATGCTGAGAAGGCTTG-TTTGAA  149

Query  120  GTCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGA  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  GTCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGA  209

Query  180  AGGAGGCTTATTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAG  239
            | ||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||
Sbjct  210  AAGAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAG  269

Query  240  GACGCTACAGAGTATTTGTGTTTTGACAGTTGTTTCAAATACCACCACCTCAGTGATAAT  299
            |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||
Sbjct  270  GACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTAT  329

Query  300  TCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTGCACCTTGGTAAACA  359
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  330  TCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTAAACA  389

Query  360  TTTACCGATGTTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTT  419
            |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  390  TTTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTT  449

Query  420  ATAG  423
            ||||
Sbjct  450  ATAG  453


> AT3G44130.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 109/113 (96%), Gaps = 1/113 (1%)
 Strand=Plus/Plus

Query  39   GATACAAAAGTTCTAGCTGCACAATACGGACCTAAAGCAGGAACGAAAAAGAACGAAAAT  98
            ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  799  GATACAAAAGTTCTAACTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAAT  858

Query  99   GCTGAGAAGACTTGTTTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGG  151
            ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct  859  GCTGAGAAGGCTTG-TTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGG  910


> AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like 
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062

 Score =  165 bits (89),  Expect = 3e-40
 Identities = 114/126 (90%), Gaps = 1/126 (1%)
 Strand=Plus/Plus

Query  199  TTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAGGACGCTACAGAGTATTTGT  258
            ||| |||||||||||| ||||||||| | |||| ||||||||||| ||||||||||||||
Sbjct  340  TTG-GAAAAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGT  398

Query  259  GTTTTGACAGTTGTTTCAAATACCACCACCTCAGTGATAATTCAGGTTGTACATGATGGT  318
            |||||||| |||  | |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct  399  GTTTTGACTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGAT  458

Query  319  GGTTCT  324
            ||||||
Sbjct  459  GGTTCT  464


 Score =  156 bits (84),  Expect = 2e-37
 Identities = 107/118 (91%), Gaps = 2/118 (2%)
 Strand=Plus/Plus

Query  35   AGGAGATACAAAAGTTCTAGCTGCACAATACGGACCTAAAGCAGGAACGAAAAAGAACGA  94
            ||| ||||||||||||||||||||    || |||||||||||||||||||||||||||||
Sbjct  227  AGGGGATACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAAAAGAACGA  286

Query  95   AAATGCTGAGAAGACTTGTTTTGAAGTCATATGGAAGCCTTAAA-CCGGATAGATTGG  151
            ||||||||||||| |||||||||||||||||||||||||| ||| ||||  |||||||
Sbjct  287  AAATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAGCCT-AAATCCGGGCAGATTGG  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5