BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475445
Length=2047
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58290.1 | Symbols: HEMA1 | Glutamyl-tRNA reductase family p... 3206 0.0
AT1G09940.1 | Symbols: HEMA2 | Glutamyl-tRNA reductase family p... 1227 0.0
> AT1G58290.1 | Symbols: HEMA1 | Glutamyl-tRNA reductase family
protein | chr1:21623726-21626200 REVERSE LENGTH=2083
Length=2083
Score = 3206 bits (1736), Expect = 0.0
Identities = 1973/2081 (95%), Gaps = 41/2081 (2%)
Strand=Plus/Plus
Query 1 AGCCTCAAATCTGACAAATCATCA-TCACAACGATCTCTCCTTCTTCCACATCGCAACCC 59
|||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||
Sbjct 1 AGCCTCAAATCTGACAAATCAT-ATTCACAGCGA--TCTCCTTCTTCCACATCGCAACCC 57
Query 60 AATCCCTCTCTG--TC-T-C-GAATCCTGA-TCTCTCTCTCAAGGGTTTGGTTTTTTGGA 113
|||||||||||| || | | ||| || | |||||||| ||| |||||||||||||| |
Sbjct 58 AATCCCTCTCTGTCTCTTCCTCAATTCTTATTCTCTCTCGCAAAGGTTTGGTTTTTTGAA 117
Query 114 GACAAAGAGAGGAGATTTGAGA-TTTGGGTTTCAATGGCGGTTTCAAGTGCTTTCGTTGG 172
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 GAC--AGAGAGGAGATTTGAGATTTTGGGTTTCAATGGCGGTTTCAAGTGCTTTCGTTGG 175
Query 173 TTGTCCAAAGCTTGAGACTTTATTGAATCACCATAATCTATCT-C--CTTCTTC-TC--C 226
||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |
Sbjct 176 TTGTCCAAAGCTTGAGACTTTATTGAATCACCATAATCTATCTCCTTCTTCTTCTTCTTC 235
Query 227 GTCCTCTGTTTCACAGACACCATTGGGTCTTAATGGGGTTCGTG----T----------- 271
|||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 236 GTCCTCTGTTTCACAGACACCATTGGGTCTTAATGGGGTTCGTGTTCTTCCGAAGAACAA 295
Query 272 TAGAACCAGACGAGGTTTGATCCAAAAAGCTCGTTGTGAGCTCTCTG---CTTCTGATTC 328
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 296 TAGAACCAGACGAGGTTTGATCCAAAAAGCTCGTTGTGAGCTCTCTGCTTCTTCTGATTC 355
Query 329 TGCTTCTAATGCTGCAAGCATCTCTGCTCTTGAACAACTCAAGAACTCTGCAACTGATAG 388
||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 356 TGCGTCTAATGCAGCTAGCATCTCTGCTCTTGAACAACTCAAGAACTCTGCAGCTGATCG 415
Query 389 ATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCTCCTGT 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATATACAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCTCCTGT 475
Query 449 TGAGATGCGTGAGAAGCTTGCTATACCAGAAGCTGAATGGCCAAGAGCTATTGCTGAATT 508
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 476 TGAGATGCGTGAGAAGCTTGCTATACCTGAAGCTGAATGGCCAAGAGCTATTGCTGAATT 535
Query 509 GTGCGGTTTGAATCATATCGAAGAAGCTGCGGTGCTTAGTACTTGTAATCGTATGGAGAT 568
||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 536 GTGTGGTTTGAATCATATTGAAGAAGCTGCTGTGCTTAGTACTTGTAACCGTATGGAGAT 595
Query 569 TTATGTTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTGACTGAGTGGATGTCAAA 628
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 596 TTATGTTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTTACTGAATGGATGTCAAA 655
Query 629 GACGAGTGGGATCCCTGTTTCGGAGATTTGTGAGCACCGTTTTCTGTTGTACAACAAGGA 688
||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 656 GACGAGTGGGATCCCAGTTTCAGAGATTTGTCAACACCGTTTTCTGTTGTACAACAAGGA 715
Query 689 TGCTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGAGAAGG 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGCTACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGAGAAGG 775
Query 749 TCAGATTCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGCCAAGGAGTGAATGGCTTTGG 808
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 776 TCAGATCCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGTCAAGGAGTGAATGGCTTTGG 835
Query 809 GAGGAATATCAGCGGGTTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAGAACAGA 868
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GAGGAATATCAGCGGGCTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAGAACAGA 895
Query 869 GACAAACATTGCTTCTGGGGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGCTCTGAT 928
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GACAAATATTGCTTCTGGTGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGCTCTGAT 955
Query 929 GAAGCTTCCGCAATCTTCACACGCATCTGCTAGGATGTGTGTAATTGGCGCTGGAAAAAT 988
|||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 956 GAAGCTTCCGCAGTCTTCAAACGTATCTGCTAGGATGTGTGTAATTGGCGCTGGAAAAAT 1015
Query 989 GGGGAAGCTTGTGATTAAGCATATGATGGCTAAGGGTTGCACAAAAGTGGTGGTGGTCAA 1048
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1016 GGGGAAGCTTGTGATTAAGCATTTGATGGCTAAGGGTTGCACAAAAGTGGTGGTAGTCAA 1075
Query 1049 CAGAAGTGAAGAGAGAGTTTCAGCTATTCGTGAGGAGATGCCGGGTATTGAGATTATATA 1108
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1076 CAGAAGTGAAGAGAGGGTTTCAGCTATCCGTGAGGAGATGCCTGGTATTGAGATTATATA 1135
Query 1109 TCGACCTCTTGATGAGATGCTAGCTTGTGCTGCAGAAGCGGATGTTGTGTTTACCAGCAC 1168
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1136 TCGACCTCTTGATGAGATGCTAGCTTGTGCTTCAGAAGCGGATGTTGTGTTTACCAGCAC 1195
Query 1169 AGCTTCTGAGACGCCATTGTTCTTAAAGGAGCATGTGGAGACTCTCCCTCAAGCTTCTCC 1228
||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1196 AGCCTCTGAGACGCCATTGTTCTTAAAGGAGCATGTAGAGAATCTCCCTCAAGCTTCTCC 1255
Query 1229 AGAGGTTGGAGGACTGAGGCTTTTTGTTGACATCTCTGTTCCGAGAAATGTCGGATCTTG 1288
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1256 AGAGGTTGGAGGACTGAGGCATTTTGTTGACATCTCTGTTCCGAGAAATGTTGGATCTTG 1315
Query 1289 TGTTGGTGAAGTAGAAACCGCGCGGGTTTACAATGTGGACGATCTCAAAGAAGTTGTTGC 1348
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGTTGGTGAAGTAGAAACAGCACGGGTTTACAATGTGGACGATCTCAAAGAAGTTGTTGC 1375
Query 1349 TGCCAACAAAGAAGACAGGTTGAGGAAAGCAATGGAAGCTCAAACCATAATCACAGAGGA 1408
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGCCAACAAAGAAGACAGGATGAGGAAAGCAATGGAAGCTCAAACCATAATCACAGAGGA 1435
Query 1409 ATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTTCCAACGATCAAGAAGTT 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTTCCAACGATCAAGAAGTT 1495
Query 1469 AAGAGCTTATGCAGAGAGAATCAGAGTGGCAGAGCTAGAGAAGTGCATGTCCAAAATGGG 1528
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1496 AAGAGCTTATGCAGAGAGAATCAGAGTGGCAGAGCTCGAGAAGTGCATGTCCAAAATGGG 1555
Query 1529 AGATGACATCAACAAGAAAACAACAAGAGCGGTTGATGACTTAAGCCGAGGTATTGTGAA 1588
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1556 AGATGATATCAACAAGAAAACAACGAGAGCGGTTGATGACTTAAGCCGAGGTATCGTGAA 1615
Query 1589 CAGATTCTTACATGGTCCAATGCAGCATTTGAGATGTGACGGGAGTGATAGTAGAACGCT 1648
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1616 CAGATTCTTACATGGTCCAATGCAGCATTTGAGATGTGACGGAAGTGACAGTAGAACGCT 1675
Query 1649 AAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGAATGTACGGGCTTGAGAAAGACAT 1708
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1676 GAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGAATGTACGGTCTTGAGAAAGACAT 1735
Query 1709 TTTGGAGGAAAAGCTTAAGGCAATGGCGGAACAACAACAGAAGTAAAAGAGAAAAAGA-G 1767
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1736 TTTGGAGGAAAAGCTTAAGGCAATGGCGGAACAACAACAGAAGTAAAAGAGAAAAATAAG 1795
Query 1768 AAGATGTTCATCTCTTTTGACAGATATAAGATTAGCTTCCCCGCAAACTC-GAGTAAATT 1826
|||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 1796 AAGATGTTCATCTCTTTTGACA--TATAAGATTAGCTTCCCCACAAACTCTGAGTAAATT 1853
Query 1827 GCATAGATCCTATAGCTATGGATCTATTTGATTCATTTAATTTGTGTGCAAGAGACTAAC 1886
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 GCATAGATCCTATAGCGATGGATCTATTTGATTCATTTAATTTGTGTGCAAGAGACTAAC 1913
Query 1887 ATTTCTATTGTCAAGTGTAAGTGTTGTGAAGCTATAAGCGAGCTTGTTGCATGTTTGTTG 1946
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 AATTCTATCGTCAAGTGTAAGTGTTGTGAAGCTATAAGCGAGCTTGTTGCATGTTTGTTG 1973
Query 1947 CTTCATAGACTCGAGTGTTACAGTATTGATCCAAGTACCGTTACATATTTGTAATAATGT 2006
|||||||||||||||||| | |||||| ||| |||| |||||||||| |||||||||||
Sbjct 1974 CTTCATAGACTCGAGTGTAATGGTATTGGTCCCAGTATCGTTACATATATGTAATAATGT 2033
Query 2007 ATAAACTTTGGTTCATGCAGTATAGAGAAATGtttttttCT 2047
|||||||||||||| |||| |||||||||||||||||||||
Sbjct 2034 ATAAACTTTGGTTCTTGCAATATAGAGAAATGTTTTTTTCT 2074
> AT1G09940.1 | Symbols: HEMA2 | Glutamyl-tRNA reductase family
protein | chr1:3236995-3239554 REVERSE LENGTH=2114
Length=2114
Score = 1227 bits (664), Expect = 0.0
Identities = 1182/1428 (83%), Gaps = 52/1428 (4%)
Strand=Plus/Plus
Query 335 TAATGCTGCAAGCATCTCTGCTCTTGAACAACTCAAGAAC-TCTGCAACTGATAGATATA 393
||| || || |||||||| ||||| || || |||||| || ||||| | ||| |||| |
Sbjct 478 TAAGGCAGCTAGCATCTCAGCTCTCGAGCAGCTCAAG-ACTTCTGCTATTGACCGATACA 536
Query 394 CAAAGGAAAGAAGCAGTATTGTTGTGATTGGACTTAGTATTCACACAGCTCCTGTTGAGA 453
| |||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 537 CTAAGGAAAGAAGCAGCATTGTGGTGATTGGGCTTAGCATTCACACAGCTCCTGTTGAGA 596
Query 454 TGCGTGAGAAGCTTGCTATACCAGAAGCTGAATGGCCAAGAGCTATTGCTGAATTGTGCG 513
|||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |
Sbjct 597 TGCGTGAGAAGCTTGCCATTCCAGAAGCTGAATGGCCACGAGCTATTGCTGAATTGTGTG 656
Query 514 GTTTGAATCATATCGAAGAAGCTGCGGTGCTTAGTACTTGTAATCGTATGGAGATTTATG 573
||||||||||||| ||||||||||| || || ||||| || || || |||||||||||||
Sbjct 657 GTTTGAATCATATTGAAGAAGCTGCTGTACTCAGTACCTGCAACCGAATGGAGATTTATG 716
Query 574 TTTTAGCTTTATCTCAGCATCGTGGAGTTAAAGAAGTGACTGAGTGGATGTCAAAGACGA 633
|||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 717 TTTTGGCTCTATCTCAGCATCGTGGAGTCAAAGAAGTGACTGAGTGGATGTCTAAGACAA 776
Query 634 GTGGGATCCCTGTTTCGGAGATTTGTGAGCACCGTTTTCTGTTGTACAACAAGGATG-CT 692
|||| ||||| ||||| || || ||| |||| |||||||| |||||||||||||||| |
Sbjct 777 GTGGAATCCCGGTTTCAGAAATCTGTCAGCATCGTTTTCTATTGTACAACAAGGATGTC- 835
Query 693 ACACAGCATATATTTGAAGTCTCAGCTGGTCTTGACTCTCTTGTCCTAGGAGAAGGTCAG 752
|| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 836 ACGCAACATATATTTGAAGTCTCAGCTGGTCTAGACTCTCTTGTCCTAGGTGAAGGTCAG 895
Query 753 ATTCTTGCACAGGTGAAACAAGTTGTGAAAGTTGGCCAAGGAGTGAATGGCTTTGGGAGG 812
|| ||||||||||| ||||||||||| ||||| || |||||||| ||||| |||||||||
Sbjct 896 ATACTTGCACAGGTTAAACAAGTTGTTAAAGTAGGTCAAGGAGTCAATGGTTTTGGGAGG 955
Query 813 AATATCAGCGGGTTGTTTAAACACGCGATAACTGTTGGTAAGCGTGTTAGAACAGAGACA 872
|||||||| ||| | ||||||||||| || || ||||| |||||||| ||||||||||||
Sbjct 956 AATATCAGTGGGCTATTTAAACACGCAATCACAGTTGGAAAGCGTGTCAGAACAGAGACA 1015
Query 873 AACATTGCTTCTGGGGCGGTTTCGGTTAGCTCAGCTGCTGTTGAACTTGCTCTGATGAAG 932
|| || ||| ||||||| ||||| |||||||| ||||| |||||||||||||| ||||||
Sbjct 1016 AATATCGCTGCTGGGGCTGTTTCCGTTAGCTCGGCTGCAGTTGAACTTGCTCTCATGAAG 1075
Query 933 CTTCC-GCAATCTTCACACGCATC-T--GCTAGGATGTGTG-TAATTGGCGCTGGAAAAA 987
||||| | ||||||| || ||||| | |||||||||| || || |||| |||||||| |
Sbjct 1076 CTTCCCG-AATCTTCTCATGCATCATCTGCTAGGATGT-TGGTAGTTGGTGCTGGAAAGA 1133
Query 988 TGGGGAAGCTTGTGATTAAGCA-TATGATGGCTAAGGGTTGCAC-AAAAGTGGTGGTGGT 1045
||||||||||||| || ||||| | || | ||||| |||||||| |||| ||||||| ||
Sbjct 1134 TGGGGAAGCTTGTAATCAAGCACT-TGGTTGCTAAAGGTTGCACCAAAA-TGGTGGTTGT 1191
Query 1046 CAA-CAGAAGTGAAGAGAGAGTTTCAGCTATTCGTGAGGAGATGCCG---GGTATTGAGA 1101
|| | |||| ||||||| |||| ||||| | || | ||||||||| || ||||||
Sbjct 1192 GAATC-GAAGCGAAGAGAAAGTTGCAGCTGTCCGCAATGAGATGCCGCCTGGCGTTGAGA 1250
Query 1102 TTATATATCGACCTCTTGATGAGATGCTAG-CTTGTGCTGCAGAAGCGGATGTTGTGTTT 1160
|||| ||| ||| |||||||||||||| | |||||||||||||||| ||||| || |||
Sbjct 1251 TTATTTATAAACCCCTTGATGAGATGCT-GTCTTGTGCTGCAGAAGCTGATGTAGTCTTT 1309
Query 1161 ACCAGCACAGCTTCTGAGACGCCATTGTTCTTAAAGGAGCATGTGGAGACTCTCCCTCAA 1220
|| |||||||| |||||||| ||||| ||||| |||||||| || |||||||||||||
Sbjct 1310 ACTAGCACAGCATCTGAGACACCATTATTCTTGAAGGAGCAAGTAGAGACTCTCCCTCCT 1369
Query 1221 GCTTCTCCAGAGGTTGGAGGACTGAGGCTTTTTGTTGACATCTCTGTTCCGAGAAATGTC 1280
| || |||| | | | |||||| |||||||| ||||||||||| |||||||||
Sbjct 1370 G-TT----AGAGAT-G-----C-GAGGCTCTTTGTTGATATCTCTGTTCCTAGAAATGTC 1417
Query 1281 GGATCTTGTGTTGGTGAAGTAGAAACCG--CGCGGGTTTACAATGTGGACGATCTCAAAG 1338
|| || || || | |||| |||| | | | ||||||| ||| ||||| || ||||| |
Sbjct 1418 GGGTCCTGCGTCGCTGAAATAGA--CGGTACACGGGTTTTCAACGTGGATGACCTCAAGG 1475
Query 1339 AAGTTGTTGCTGCCAACAAAGAAGACAGGTTGAGGAAAGCAATGGAAGCTCAAACCATAA 1398
|||| |||||||| || |||||||||||| |||||||||||||||| ||||| | ||||
Sbjct 1476 AAGTCGTTGCTGCGAATAAAGAAGACAGGGTGAGGAAAGCAATGGACGCTCAGGCTATAA 1535
Query 1399 TCACAGAGGAATCCACACAGTTTGAAGCATGGAGGGATTCATTGGAGACGGTTCCAACGA 1458
| ||||| ||||| | ||| |||||||| |||||||| || ||||||||||||||||| |
Sbjct 1536 TTACAGATGAATCAAAACACTTTGAAGCGTGGAGGGACTCGTTGGAGACGGTTCCAACAA 1595
Query 1459 TCAAGAAGTTAAGAGCTTATGCAGAGAGAATCAGAG-TGGCAGAGCTAGAGAAGTGCATG 1517
||||||| ||||| | ||| |||||||||| | || || ||||| | ||||| | | ||
Sbjct 1596 TCAAGAAATTAAGGGGATATACAGAGAGAATTATAGCTG-CAGAGATTGAGAAATCCTTG 1654
Query 1518 TCCAAAATGGGAGAT-GACATCAACAAGAAAACAAC-AAGAGCGGTTGATGA-CTTAAGC 1574
|||||||||| || ||||| |||||||| | | || | | || ||||| || || |
Sbjct 1655 CCCAAAATGGGC-ATTGACATGAACAAGAAGATGAGGAAAA-CAGTAGATGATCT-AATC 1711
Query 1575 CGAGGTATTGTGAACA-GATTCTTACATGGTCCAATGCAGCATTTGAGATGTGACGGGAG 1633
|||||||| ||||||| | | || || ||||||||||||||||||||||| || ||||
Sbjct 1712 CGAGGTATAGTGAACAAGCTCCTG-CACGGTCCAATGCAGCATTTGAGATGCGATGGGAA 1770
Query 1634 TGATAGTAGAACGCTAAGCGAGACCCTTGAGAATATGCATGCTTTGAACAGAATGTACGG 1693
||||| |||||||| || ||||| || || || ||||| ||| ||||||| ||||| ||
Sbjct 1771 CGATAGCAGAACGCTGAGTGAGACACTAGATAACATGCAGGCTCTGAACAGGATGTATGG 1830
Query 1694 GCTTGA-GAAAGACATTTTGGAGGAAAAGCTTA-AGGCAATGGCGGAA 1739
||||| | | || || | ||||| ||| ||| || ||| || ||||
Sbjct 1831 ACTTGATGCA-GAGATACTCGAGGAGAAGATTAGAG-CAAAGGTGGAA 1876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101455301445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5