BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475446
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58300.1 | Symbols: HO4 | heme oxygenase 4 | chr1:21628012-2... 992 0.0
AT2G26670.1 | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant... 497 6e-140
AT1G69720.1 | Symbols: HO3 | heme oxygenase 3 | chr1:26226866-2... 473 1e-132
AT3G43955.1 | Symbols: | transposable element gene | chr3:1576... 52.8 5e-06
> AT1G58300.1 | Symbols: HO4 | heme oxygenase 4 | chr1:21628012-21629996
REVERSE LENGTH=855
Length=855
Score = 992 bits (537), Expect = 0.0
Identities = 616/655 (94%), Gaps = 2/655 (0%)
Strand=Plus/Plus
Query 223 AAGCCAGAGAGAAGGTATCCTGGAGAGCCAAAGGGGTTTGTGGAGGAGATGAGGTTCGTG 282
|||||||| |||||||||||| |||| || || |||||||||||||||||||||||||||
Sbjct 199 AAGCCAGAAAGAAGGTATCCTCGAGAACCGAATGGGTTTGTGGAGGAGATGAGGTTCGTG 258
Query 283 GTGATGAAAATGCACCCGAGAGATCAGGTAAAAGAAGGAAAAAATGAGTCCAACGGTCTT 342
|| |||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 259 GTAATGAAAATTCACCCAAGAGATCAGGTAAAAGAAGGAAAAAGTGACTCCAACGATCTT 318
Query 343 GTATCAACTTGGAATTTCACAATCGAAGGGTACTTGAAGTTTCTCGTGGATAGTAAGCTT 402
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 319 GTATCAACATGGAATTTCACAATCGAAGGGTACTTGAAGTTTCTCGTGGACAGTAAGCTT 378
Query 403 GTGTTTGAGACGCTTGAACGGATTATTAACGAATCTACTCTCCAAGCTTATGCCGGGCTC 462
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 379 GTGTTTGAGACGCTTGAACGAATTATTAACGAATCTGCTATCCAAGCTTATGCCGGGCTC 438
Query 463 AAAAACACAGGGTTGGAAAGGACAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAA 522
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 439 AAAAACACGGGGTTGGAAAGGGCAGAGAATTTGAGTAGGGATTTGGAGTGGTTCAAGGAA 498
Query 523 CAAGGTTACGAGATTCCAGAGCCAATGGCTCCTGGTAAAATATATTCTCAGCATTTAAAG 582
||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||
Sbjct 499 CAAGGTTACGAGATTCCAGAGTCAATGGTTCCTGGTAAAGCATATTCTCAGTATTTAAAG 558
Query 583 AATATAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACATCTA-CTTTGC 641
|||||||||||||| ||||||| ||||||||| ||||||||||||||||| || ||||||
Sbjct 559 AATATAGCAGAGAAAGATCCTCCAGCATTCATCTGTCACTTCTACAACAT-TAACTTTGC 617
Query 642 ACATAGTGCTGGTGGTCGAATGATTAGGACAAAGGTTGCTGAGAAGATACTCGACAATAA 701
|||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 618 ACATAGCGCTGGTGGTCGAATGATTGGGACAAAGGTAGCTGAGAAGATACTCGACAATAA 677
Query 702 AGAACTCGAGTTCTACAAATGGGATGGCCAACTTTCCGAATTGTTGCAAAACGTGAGTGA 761
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 678 AGAACTCGAGTTCTACAAATGGGACGGCCAACTTTCCGAATTGTTGCAGAACGTGAGTGA 737
Query 762 AGAATTGAACAAAGTGGCTGAGTTGTGGACAAGAGAAGAGAAGAATCATTGTTTGGCAGA 821
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 738 AGAATTGAACAAAGTGGCTGAGTTGTGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGA 797
Query 822 GACAGAGATATCGTTCAAGTTTTATTGGGAGATTTTTCGTTTCTTAATGTCATAA 876
|||||||| |||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 798 GACAGAGAAATCGTTCAAGTTTTATTGGGAGATTTTTCGTTACTTATTGTCCTAA 852
Score = 217 bits (117), Expect = 2e-55
Identities = 160/179 (89%), Gaps = 10/179 (6%)
Strand=Plus/Plus
Query 1 ATGGCTACATCAAGACTTAATGCCTCTTTACGCTTTCCCT-CAAGCAGAAGACTTGACTG 59
|||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 1 ATGGCTACATCAAGACTTAATGCCTCTTGCCGCTTT-CCTGCAAGCAGAAGACTTGACTG 59
Query 60 CGAGAGCTATGTCAGTCTGAGAGCT--GAC-G--A---TAAGATATGCCCGAACCATAGC 111
||||||||||||||||||||||||| ||| | | ||||||||| || ||||||||
Sbjct 60 CGAGAGCTATGTCAGTCTGAGAGCTAAGACAGTGACAATAAGATATGTTCGGACCATAGC 119
Query 112 CGCTCCTTGTGGCCATCTTATCCGAAGAGCAAACGAAGATCGGACTTTGGTGGTGAATG 170
||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CGCTCCTCGTCGCCATCTTGTCCGAAGAGCAAACGAAGATCAGACTTTGGTGGTGAATG 178
> AT2G26670.1 | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant
haem oxygenase (decyclizing) family protein | chr2:11341684-11343572
FORWARD LENGTH=1159
Length=1159
Score = 497 bits (269), Expect = 6e-140
Identities = 541/666 (81%), Gaps = 44/666 (7%)
Strand=Plus/Plus
Query 235 AGGTATCCTGGAGAGCCAAAGGGGTTTGTGGAGGAGATGAGGTTCGTGG-TGATGAAAAT 293
|||||||||||||| ||||||| |||||||||||||||||||| |||| | |||| | |
Sbjct 328 AGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTTTGTGGCT-ATGAGACT 386
Query 294 GCACCCGAGAGATC-AGGTAAAAGAA-G-GA-AAA-A-A-TGAGTCCA---ACG---GTC 340
|| | | ||||| || | || ||| | || ||| | | | | || | | | |||
Sbjct 387 TCATACTAAAGATCAAGCT-AAGGAAGGTGAGAAAGAGACTAAATCTATTGAGGAACGTC 445
Query 341 TTGTAT-C-AACTTGGAATTTCACAATCGAAGGGTACTTGAAGTTTCTCGTGGATAGTAA 398
||| | | || | |||| | || | ||||| ||||||| |||||| |||||||||||
Sbjct 446 CTGT-TGCTAAATGGGAACCT-ACTGTTGAAGGTTACTTGAGGTTTCTTGTGGATAGTAA 503
Query 399 GCTT-GTGTT-TGAGACGCTTGAACGGATTATT-AACGAATCTACTCT-CCAAGCTTATG 454
|| || || ||| || ||||||| ||||||| || || || | | | |||| ||||||
Sbjct 504 -ATTGGT-TTATGATACTCTTGAACTGATTATTCAA-GACTCCAATTTCCCAA-CTTATG 559
Query 455 CCGGGCTCAAAAACACAGGGTTGGAAAGGA-CAGAGAATTTGAGT--AGGGATTTGGAGT 511
||| | |||| ||||| ||| |||||| || | ||||| || | | | |||||||||||
Sbjct 560 CCGAGTTCAAGAACACGGGGCTGGAAA-GAGCGGAGAAATT-A-TCCACGGATTTGGAGT 616
Query 512 GGTTCAAGGAACAAGGTTACGAGATTCCAGAGCCAATGGCTCCTGGTAAAATATATTCTC 571
||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||
Sbjct 617 GGTTCAAGGAACAAGGTTACGAGATTCCAGAACCAACAGCTCCTGGTAAAACATATTCTC 676
Query 572 AGCATTTAAAG-AATATAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAAC 630
| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AATATTTAAAGGAAT-TAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAAC 735
Query 631 ATCTACTTTGCACATAGTGCTGGTGGTCGAATGATTAGG-ACAAAGGTTGCTGAGAAGAT 689
||||||||||| |||||||||||||| ||||||||| || | |||||| || ||| |||
Sbjct 736 ATCTACTTTGCTCATAGTGCTGGTGGACGAATGATT-GGCAGAAAGGTGGCAGAGCGGAT 794
Query 690 ACTCGACAATAAAGAACTCGAGTTCTACAAATGGGATGGCCAACTTTC-CGAATTGTTGC 748
|||||| ||||||||||||||||||||||||||||| ||| ||||||| | |||||||||
Sbjct 795 ACTCGATAATAAAGAACTCGAGTTCTACAAATGGGACGGCGAACTTTCTC-AATTGTTGC 853
Query 749 AAAACGTGAGTGAAGAAT-TGAACAAAGTGGCTGAGTTGTGGACAAGAGAAGAGAAGAAT 807
| ||||| || || ||| ||||||| || || ||| |||||| |||||||| ||||||
Sbjct 854 AGAACGTTAGGGA-GAAACTGAACAAGGTTGCAGAGGAGTGGACTAGAGAAGAAAAGAAT 912
Query 808 CATTGTTTGGCAGAGACAGAGATATCGTTCAAGTTTTATTGG-GAGATTTTTCGTTTCTT 866
|||||||||| |||||| |||| ||||||||||| || | || ||||| ||||| || |
Sbjct 913 CATTGTTTGGAAGAGACTGAGAAATCGTTCAAGTATTCT-GGTGAGATACTTCGTCTCAT 971
Query 867 AATGTC 872
| ||||
Sbjct 972 ATTGTC 977
> AT1G69720.1 | Symbols: HO3 | heme oxygenase 3 | chr1:26226866-26228580
FORWARD LENGTH=1115
Length=1115
Score = 473 bits (256), Expect = 1e-132
Identities = 530/656 (81%), Gaps = 43/656 (7%)
Strand=Plus/Plus
Query 232 AGAAGGTATCCTGGAGAGCCAAAGGGGTTTGTGGAGGAGATGAGGTTCGTGGTGATGAAA 291
|||| |||||| ||||| ||||||| ||||||||||||||||| ||||||| ||||| |
Sbjct 299 AGAA-GTATCCAGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGATTCGTGGCGATGAGA 357
Query 292 ATGCACCCGAGAGATCAGGTAA---AAGAAGGAAAA-AA--T-GA-GTCC--A--ACGGT 339
|||| ||| |||||| | || ||| || |||| || | || ||| | | |||
Sbjct 358 TTGCATACGAAAGATCAAGCAAGGGAAGGAGAAAAAGAATCTAGATCTCCAGAGGAAGGT 417
Query 340 CTTGTATC-AACTTGGAATTTC-ACAATCGAAGGGTACTTGA-AGTTTCTCGTGGATAGT 396
| || | || ||| | | || | ||||| ||||| | | ||||| |||||||||
Sbjct 418 CCGGTGGCGAA-ATGGGA-GCCGACTGTGGAAGGATACTT-ACATTTTCTTGTGGATAGT 474
Query 397 AAGCTTGTGTTT--GAGACGCTTGAACGGATTATTAACGAATCTACTCT-CCAAGCTTAT 453
||| ||| |||| || ||||||||| |||| ||| | | ||| | | | |||| |||||
Sbjct 475 AAG-TTG-GTTTACGACACGCTTGAAGGGATCATTGATGGATCCAATTTCCCAA-CTTAT 531
Query 454 GCCGGGCTCAAAAACACAGGG-TTGGAAAGGA-CAGAGAATTTGAGTAGGGATTTGGAGT 511
|| || |||| ||||| ||| || |||| || |||||| |||| | | ||||||||||
Sbjct 532 GCTGGTTTCAAGAACAC-GGGATTAGAAA-GAGCAGAGAGTTTGCGGAAAGATTTGGAGT 589
Query 512 GGTTCAAGGAACAAGGTTACGAGATTCCAGAGCCAATGGCTCCTGGTAAAATATATTCTC 571
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 590 GGTTCAAGGAACAAGGTTATGAGATTCCAGAGCCAATGGCTCCTGGTAAAACATATTCTG 649
Query 572 AGCATTTAAA-GAATATAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAAC 630
|| ||||||| || | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 650 AGTATTTAAAAGATT-TAGCAGAGAATGATCCTCAAGCATTCATTTGTCACTTCTACAAC 708
Query 631 ATCTACTTTGCACATAGTGCTGGTGGTC-GAATGATTAGGA-CAAAGGT-TGCTGAGAAG 687
|| |||||||| ||||| || ||||| | || ||||| ||| ||||||| | || |||||
Sbjct 709 ATTTACTTTGCTCATAGCGCCGGTGGCCAGA-TGATT-GGAACAAAGGTAT-CTAAGAAG 765
Query 688 ATACTCGACAATAAAGAACTCGAGTTCTACAAATGGGATGGCCAACTTTC-CGAATTGTT 746
||||| || |||||||||||||||||||| |||||||| || |||||||| | | |||||
Sbjct 766 ATACTAGATAATAAAGAACTCGAGTTCTATAAATGGGACGGTCAACTTTCTC-AGTTGTT 824
Query 747 GCAAAACGTGAGTG-AAGAATTGAACAAAGTGGCTGAGTTGTGGACAAGAGAAGAGAAGA 805
|||||| ||||| | || || |||||||||| || |||| ||||||||||||||| ||||
Sbjct 825 GCAAAATGTGAG-GCAAAAACTGAACAAAGTTGCAGAGTGGTGGACAAGAGAAGAAAAGA 883
Query 806 ATCATTGTTTGGCAGAGACAGAGATATCGTTCAAGTTTT-ATTGGGAGATTTTTCG 860
|||||| |||| |||||| |||| |||||| ||||||| | |||||||| ||||
Sbjct 884 GTCATTGCTTGGAAGAGACTGAGAAATCGTTTAAGTTTTCAG-GGGAGATTCTTCG 938
> AT3G43955.1 | Symbols: | transposable element gene | chr3:15768820-15773629
REVERSE LENGTH=4728
Length=4728
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 196 ACTCTAATAGCCTCCCTCAAGATGGCAA 223
||||||||||||||||||||||||||||
Sbjct 4609 ACTCTAATAGCCTCCCTCAAGATGGCAA 4582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5