BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475448
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58320.1 | Symbols: | PLAC8 family protein | chr1:21634123-... 656 0.0
> AT1G58320.1 | Symbols: | PLAC8 family protein | chr1:21634123-21635303
REVERSE LENGTH=447
Length=447
Score = 656 bits (355), Expect = 0.0
Identities = 415/443 (94%), Gaps = 7/443 (2%)
Strand=Plus/Plus
Query 7 GAACAAGAAAGCAAAAATGAGAAGATAGTAACTGAAGGGCAATGGACTACCGGTTTATAC 66
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 7 GAACAAGAAGGCAAAAATGAGAAGAAAGTAACTGAAGGGCAATGGACTACCGGTTTATAC 66
Query 67 GATTGTCTCTCCGAAGATATCTCTACATGCTGCTTTACATGGTTTTGTCCATGCGTTGCA 126
|| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 67 GACTGTCTCTCTGAAGATATCTCTACATGCTGCTTTACATGGGTTTGTCCTTGCGTTGCA 126
Query 127 TTTGGGAGGATCGCTGAGATCCTTGATAAAGGAGAAACAAGT-GAAGGACTAGCTGGATT 185
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 127 TTTGGGAGGATCGCTGAGATCCTTGATAAAGGAGAAACAAGTCG-AGGACTTGCTGGATT 185
Query 186 AATGGTGGTCGCAATGTCTAGCATTGGGTGTGGATGGTACTATGCTTCAAAATACAGAGC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 AATGGTGGTCGCAATGTCTAGCATTGGGTGTGGATGGTACTATGCTTCAAAATACAGAGC 245
Query 246 CAAATTGAGGCATCAATACTCTTTGCCCGAGGAGCCTTGTGCCGATGGCGCCATTCACTT 305
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 246 CAAATTGAGGCATCAATACGCTTTGCCCGAGGCGCCTTGTGCCGATGGCGCCATTCACTG 305
Query 306 CTTCTGCTGTCCATGTGCTCTTTCTCAAGAACACCGCGAACTCAAACATCGTGGTCTTGA 365
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 306 CTTCTGCTGTCCATGTGCTCTTACTCAAGAACACCGCGAACTCAAACATCGAGGTCTTGA 365
Query 366 TCCTTCTCTAGGA---AACAATGAGACA-GGAAGATCAAATAGCAAAACGCCGCCGTTTG 421
||| |||||||| |||| ||||| | ||| ||| ||| ||||| ||||| |||||||
Sbjct 366 TCCCTCTCTAGGGTGGAACATTGAGA-ATGGAGGATTAAACAGCAACACGCCCCCGTTTG 424
Query 422 TAGCGTCTGGCATGGACCGTTAA 444
||||||| |||||||||||||||
Sbjct 425 TAGCGTCAGGCATGGACCGTTAA 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5