BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475449
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58025.2 | Symbols: | DNA-binding bromodomain-containing pr... 2217 0.0
> AT1G58025.2 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:21457667-21462243 REVERSE LENGTH=2046
Length=2046
Score = 2217 bits (1200), Expect = 0.0
Identities = 1587/1760 (90%), Gaps = 82/1760 (5%)
Strand=Plus/Plus
Query 1 ATGAAGCGTAAAAGCGGACATAAGAAAGGGAAGAAGTCTAAAAAGTCTAAGACTATCAAT 60
|||||||||||||| |||||||||||| || |||| ||||||||||||||||||
Sbjct 210 ATGAAGCGTAAAAGAGGACATAAGAAA-GG--GAAG------AAGTCTAAGACTATCAAT 260
Query 61 GAACAAGGGAACTTGAATGAGTCAACCGAAATCGCGGATAATCAAACCTCTGAGCAAAGT 120
||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||| |||
Sbjct 261 GAACAAGGGAACTTGAACGAGTCAACTGAAAACGCGGAGAATCAAACCTCTGAGCATAGT 320
Query 121 TCTGAAGCTCCTGCTGAGTGTGAG-A-A-TG-A--TGAATCTAAAATGGAGGTTGATGCG 174
||||||||||||| |||||||||| | | || | |||||||||||||||||||||| |
Sbjct 321 TCTGAAGCTCCTGTTGAGTGTGAGAATAGTGAACTTGAATCTAAAATGGAGGTTGAT--G 378
Query 175 CCTTTGTCTATTGGGAGTGGTAATTCACCTGTTGCTGGGAGTGTAGATCCAGCTGAGAAT 234
| || ||||||| ||||||| |||||||||| |||||| |||
Sbjct 379 -C----TC--------------CTTCACCTATTGCTGGAAGTGTAGATCTAGCTGATAAT 419
Query 235 ATAGCGGCGAAGTCGGTTGCGCGTGTTAAGGTTAAATTGAAGACTTCGAAAGCACCAGAA 294
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 ATAGCGGCCAAGTCTGTTGCGCGTGTTAAGGTTAAATTGAAGACTTCGAAAGCACCTGAA 479
Query 295 CCTGATGAGACCTTGGGTAATGATATC-----GA-TA------AAGCGGTGTCT-GAAAA 341
|| ||||||| ||| || |||||||| || || ||||||||| | |||||
Sbjct 480 CCCAATGAGACATTGCGTGATGATATCGATAAGAGTAGTTCTCAAGCGGTGT-TAGAAAA 538
Query 342 ACCTGTTGTGCCTGCTGAGAAAAAGGAGGAATTGGTTCCTCCTCGTTTGCCTGAGAGGAA 401
|||||||||||||| |||||||||||||||||| | | |||||||||||||||||||||
Sbjct 539 ACCTGTTGTGCCTGTTGAGAAAAAGGAGGAATTTG-T--TCCTCGTTTGCCTGAGAGGAA 595
Query 402 GCCGGTGTTTTTGAATGTTTATAGGAAAACTAAAGGTATAAAGATTAAGACTTCAAAGGC 461
|||||||||| |||||||||| ||||||||||||||||||| ||| ||| |||| |||||
Sbjct 596 GCCGGTGTTTCTGAATGTTTACAGGAAAACTAAAGGTATAAGGATAAAGTCTTCGAAGGC 655
Query 462 GGTTGATGGGTCTAGCTCGGTTGCTGAGAAGAGTG---CTGATACTGTCGAGGTTCAGGA 518
|||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 656 GGTTGATGGGTCTAGCTCGGTTACTGAGAAGAGTGCTACTGATACTGTCAAGGTTCAGGA 715
Query 519 TGCAGTAGTACTTCAAAAGGATACGAAAACGCCTGATGAGGATTCTCAAGCCAGTAAGAA 578
|| |||||| ||| ||||||||||||||| |||| ||| |||||||||| ||||||||
Sbjct 716 TGTGGTAGTAGGTCAGAAGGATACGAAAACGTCTGAGGAGAATTCTCAAGCTAGTAAGAA 775
Query 579 AGAGCCAGAAATTGCACCAATTTCTTTGCAGAAAGAGGAGAAGAAGACTGATCAAAATTC 638
|||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGAGGCGGAAATTGCAACGATTTCTTTGCAGAAAGAGGAGAAGAAGACTGATCAAAATTT 835
Query 639 ACGATACAATAAGCAAGAACTTGAAGATTCTCTTACAGTGATCAAGAAGATTATGAAGAT 698
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 836 ACGATACAATAAGCAAGAACTGGAAGATTCTCTTATTGTGATCAAGAAGATTATGAAGAT 895
Query 699 GGATGCTGCTGATCCTTTTAATGTTCCTGTGAATCCAGAAGCTCTTGGAATTCCTGACTA 758
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 896 GGAGGCTGCTGATCCTTTTAATGTTCCTGTCAATCCAGAAGCTCTTGGAATTCCTGACTA 955
Query 759 CTTT-GATATCATCAAGACACCTATGGATTTTGGAACAATATGCAATAATTTTGAGAAAG 817
||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 -TTTCGATATTATCAAGACACCTATGGATTTTGGAACAATATGCAACAATTTTGAGAAAG 1014
Query 818 GCAACAAGTATATGAATTCTGAAGATGTTTACAAGGATGTCAACTACATTTGGAATAACT 877
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1015 GCAACAAGTATATGAATTCTGAGGATGTTTACAAGGATGTCAACTACATTTGGAATAACT 1074
Query 878 GTTCCAAGTACAATAAGAAAGGTGATTATATTGTGGATCTGATGAAGCGAGTGAAGAAAA 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GTTCCAAGTACAATAAGAAAGGTGATTATATTGTGGATCTGATGAAGCGAGTGAAGAAAA 1134
Query 938 ATTTCATGAAGTACTGGACTGCAGCAGGGTTGTATACCGAGCAATCAGCAGCAGAAAATA 997
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1135 ATTTCATGAAGTACTGGACTTCAGCAGGGTTGTATACTGAGCAATCAGCAGCAGAAAATA 1194
Query 998 CAGAGGATGGCGGGAAGGCATCCACCAAAGGCAGTCAATCAAAGCAGAAGAGTCATAAAC 1057
|||| ||| || || ||||||| || | |||||||||||||||||||||
Sbjct 1195 CAGAAGAT----GG-TGG--------AAAGGCA-TCCA-CAAAGCAGAAGAGTCATAAAC 1239
Query 1058 GCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGGTATGTGTTCTGAAGCGACGTA 1117
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 1240 GCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGATATGTGTTTTGAAGCGTCGTA 1299
Query 1118 AAAGAGAACGTGAGCGAGATTCTGGAGCACAAGAGGAATCTTCACCTGCAGGAAGTCCTT 1177
||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||| |
Sbjct 1300 AAAGAGAACGTGAACGAGATTCTGGAGCTCAAGAGGAGTCTTCACCTGCGGGAAGTCCGT 1359
Query 1178 CTGTGGATAATTCATCAATAAACATGGGTGAGGAGCAGGATATGGATATTGGTGTTGACG 1237
||||||||||||||||| |||||||||||||||| | |||||||||| |||||||
Sbjct 1360 CTGTGGATAATTCATCAGTAAACATGGGTGAGGA-C-----ATGGATATTGATGTTGACA 1413
Query 1238 ACAAAACTGAACAAGAAAAAACAGAAATCGTGGAACTAGATAGTCCGGTGTCAAAAACAC 1297
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 AGAAACCTGAACAAGAAAAAACAGAAATCGTGGAACTAGATAGTCCGGTGTCAAAAACAC 1473
Query 1298 AAAGAGTTACTGAAAATAAACAGGAGGTGGAGGAAGAGGAAAACGTTGAAGTGGAGAGTG 1357
||||||| | |||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1474 AAAGAGTGATTGAAAACAAACAAGAGGTGGAGGAAGAGGAAAACGTCGAAGTGGAGAGTG 1533
Query 1358 AAAATAAAACCGAAGCTAATGTAGAGGACAAGACTCAATCGATTGATAGATCAATGGAAG 1417
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1534 AAAATAAAACCAAAGCTAATGTAGAGGACAAGACTCAGTCGATTGATAGATCAATGGAAG 1593
Query 1418 AGACTGGCGATGAACCTGTGACTAGTGCTGCAGAGAAATTGGTTGTTCTAGCTTCCCTTG 1477
||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1594 AGACTGGCGATGAGCCTGTGAATAGTGCTGCAGAGAAATTGGTTGTTTTAGCTTCCCTTG 1653
Query 1478 AAGGTCCAAAATCGACTCAGAATGAGGAAGAAGAGAAGGAAAAACAACTCCAAGAGCAAA 1537
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1654 AAGGTCCAAAATCGACTCAGAATGAGGAAGAAGAGAAGGAAAAACGACTTCAAGAGCAAA 1713
Query 1538 AGAAACGGCAGGAGTTGGAGCGTAAAGAATGGAGAATAAAGATGCAAGAAAAGTTCCAAG 1597
||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1714 AGAAACGGCTGGAGTTAGAGCGTAAAGAATGGAGAATGAAGATGCAAGAAAAGTTCCAAG 1773
Query 1598 TCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAATGAAAACAACCACA 1657
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1774 TCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAATGACAACAACCACA 1833
Query 1658 ATTCCGTATGGAACGGACCTCACTCGCTGTTTAAACGTAGAGGAGGTTCTTCAAATCATA 1717
||||||||||||||||||||||||| ||||||| |||| | |||||||| ||||| ||
Sbjct 1834 ATTCCGTATGGAACGGACCTCACTCACTGTTTAGACGTCGCGGAGGTTC---AAATCGTA 1890
Query 1718 GTAGTGCTTTACACAAAGCA 1737
||||||||||||||||||||
Sbjct 1891 GTAGTGCTTTACACAAAGCA 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89156167920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5