BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475450

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G58007.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   647    0.0  


> AT1G58007.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G09812.1); 
Has 91 Blast hits to 91 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21445903-21447341 
REVERSE LENGTH=785
Length=785

 Score =  647 bits (350),  Expect = 0.0
 Identities = 512/583 (88%), Gaps = 40/583 (7%)
 Strand=Plus/Plus

Query  1    AAGACAGTGAAGGAGATTATAGGATCCAGAGACCAAGATTATGTCTCCTCCTAATCCTTA  60
            ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct  30   AAGACAGTGAAGGAGATTATAGGATTCAGGGACCAAGATCATGTCTCCTCCTAATCCTTA  89

Query  61   GGTAACAAAAAAGCTGAAGGTTGAAGATGAACGAGTCGAGGTCGATAAGAACATGGAGCA  120
             |          | |||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct  90   -G----------G-TGAAGGTTGAAGATGAACGAATCAAGGTCGATAAGGACATGGAGCA  137

Query  121  TATACAGAACCAAAGAGGCTTCAGGGTCATCTATGAATGCGATTTCGTTTGGGTTTGTGG  180
            ||||||||||||| ||  ||||||||||||| |||||||||||||||||||| |||||||
Sbjct  138  TATACAGAACCAAGGATACTTCAGGGTCATCGATGAATGCGATTTCGTTTGGATTTGTGG  197

Query  181  CGACTGCAATATTGATATTAATGTTCATCATATTGGCAATCCTCGAACATCTCTTCAGGT  240
            |||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||
Sbjct  198  CGACTGCAATATTGATCTTAATGTTCATCATAATGGCAATTCTTGAACATCTCTTCAGGT  257

Query  241  CCGATCATTCTTCTTCTTACGATGTTGATGGCTCTTCTCAGTTTCAGAAACTTGCTGAAA  300
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  258  CCGATCATTCTTCTTCTTACGATGTTGATGACTCTTCTCAGTTTCAGAAACTTGCTGAAA  317

Query  301  AAGTC-TCTTTGGTTCCGATTACTACGTCAGATGTGTCGGTGGTGATGCCGGGAGAAAAA  359
            ||| | ||| |||||||| | ||||||||||||||||| ||||||||||||||||| |||
Sbjct  318  AAG-CTTCTATGGTTCCGGTGACTACGTCAGATGTGTCAGTGGTGATGCCGGGAGACAAA  376

Query  360  TTGCCGTCGTACGTAGCTCTTCCGGCGCCATTTCCTTGCCGGAGAGAAGGCATTCGCTGG  419
            || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  377  TTACCGTCATACGTAGCTCTTCCGGCACCATTTCCTTGCCGGAGAGAAGGCATTCGCTGG  436

Query  420  CCTTCCCACCTCTAATATATTATTGTCTCTCTTAGCTTAGTCGTTGTATCATAATT--TT  477
            ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||  ||
Sbjct  437  CCTTCCCACCTCTAATAAAGTATTGTCTCTCTTAGCTTAGTCGTTGTATCATAATTACTT  496

Query  478  -------G-----A-AC----AA---TTGCTTGCTGGATCAAAGTT--AG-TTAAAGATT  514
                   |     | ||    ||   |||||||||||||| |||||  || ||||| |||
Sbjct  497  ATCAATTGTTCTGATACTTTGAACAATTGCTTGCTGGATCGAAGTTTTAGGTTAAATATT  556

Query  515  TCTGATGATTCTTTCtttttttGTAAGAACCGAGGTAGCTAAC  557
            | |||||||||||| |||||  |||||||||||||||||||||
Sbjct  557  TATGATGATTCTTTATTTTTA-GTAAGAACCGAGGTAGCTAAC  598



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33506176049


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5