BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475457
Length=559
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57860.1 | Symbols: | Translation protein SH3-like family p... 902 0.0
AT1G57660.1 | Symbols: | Translation protein SH3-like family p... 896 0.0
AT1G09690.1 | Symbols: | Translation protein SH3-like family p... 612 1e-174
AT1G09590.1 | Symbols: | Translation protein SH3-like family p... 601 3e-171
AT1G09486.1 | Symbols: | pseudogene, 60S ribosomal protein L21... 344 5e-94
AT1G31355.1 | Symbols: | 60S ribosomal protein L21 (RPL21D), p... 322 2e-87
> AT1G57860.1 | Symbols: | Translation protein SH3-like family
protein | chr1:21429898-21430865 REVERSE LENGTH=669
Length=669
Score = 902 bits (488), Expect = 0.0
Identities = 538/562 (96%), Gaps = 4/562 (1%)
Strand=Plus/Plus
Query 1 GAGAGAAGAGGAACAATGCCGGCGGGACACGGAGTAAGAGCGAGAACAAGAGATCTGTTT 60
|||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 24 GAGAGAGGAGGAAAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTC 83
Query 61 GCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTATCTCAGAACCTTCAAG 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 84 GCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAG 143
Query 121 GTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCACAAGGGTATGCCTCATAAG 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 144 GTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAG 203
Query 181 TTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAA 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 204 TTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAA 263
Query 241 GTCAACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GTCAACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCAT 323
Query 301 GTGCAGCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTT 360
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 324 GTGCAACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAACAGAACGATGTGCTT 383
Query 361 AAGGCTGCA-GCTAAAGCCAGAGGAGAGACTATCAGCACGAAGAGACAGCCGAAAGGTCC 419
||||||| | |||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 384 AAGGCTG-ATGCTAAAGCCAGAGGTGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCC 442
Query 420 CAAACCAGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTTACTCCCATTCCTTACGA 479
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 443 TAAACCGGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGA 502
Query 480 TGTTGTCAACGATCTCAAGGGTGGCTATTGAGTTGTTTCCAGTTT-T-ATCATTCTCTGC 537
|||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||| |
Sbjct 503 TGTTGTCAACGATCTCAAGGGTGGTTATTGAGTTGTTTCCATTTTATTATCATTCTCTAC 562
Query 538 TCAGAATTTTTGCACTTGCTTT 559
||||||||||||||||||||||
Sbjct 563 TCAGAATTTTTGCACTTGCTTT 584
> AT1G57660.1 | Symbols: | Translation protein SH3-like family
protein | chr1:21355520-21356537 FORWARD LENGTH=715
Length=715
Score = 896 bits (485), Expect = 0.0
Identities = 534/557 (96%), Gaps = 6/557 (1%)
Strand=Plus/Plus
Query 7 AGAG-GAACAATGCCGGCGGGACACGGAGTAAGAGCGAGAACAAGAGATCTGTTTGCGAG 65
|||| ||| ||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 39 AGAGTGAA-AATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAG 97
Query 66 ACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTATCTCAGAACCTTCAAGGTCGG 125
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 98 ACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGG 157
Query 126 CGATTACGTCGATGTCAAGGTTAATGGAGCTATTCACAAGGGTATGCCTCATAAGTTCTA 185
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 158 CGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTA 217
Query 186 CCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAA 277
Query 246 CAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCA 337
Query 306 GCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGC 365
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 338 ACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAGCAGAACGATGTGCTTAAGGC 397
Query 366 TGCA-GCTAAAGCCAGAGGAGAGACTATCAGCACGAAGAGACAGCCGAAAGGTCCCAAAC 424
|| | ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 398 TG-ATGCTAAAGCCAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAAC 456
Query 425 CAGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTTACTCCCATTCCTTACGATGTTG 484
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 457 CGGGTTTCATGGTCGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTG 516
Query 485 TCAACGATCTCAAGGGTGGCTATTGAGTTGTTTCCAGTTT-T-ATCATTCTCTGCTCAGA 542
||||||||||||||||||| ||||||||| |||||| ||| | |||||||||| ||||||
Sbjct 517 TCAACGATCTCAAGGGTGGTTATTGAGTTTTTTCCATTTTATTATCATTCTCTACTCAGA 576
Query 543 ATTTTTGCACTTGCTTT 559
|||||||||||||||||
Sbjct 577 ATTTTTGCACTTGCTTT 593
> AT1G09690.1 | Symbols: | Translation protein SH3-like family
protein | chr1:3136188-3137475 REVERSE LENGTH=759
Length=759
Score = 612 bits (331), Expect = 1e-174
Identities = 449/507 (89%), Gaps = 3/507 (1%)
Strand=Plus/Plus
Query 8 GAGGAACAATGCCGGCGGGACACGGAGTAAGAGCGAGAACAAGAGATCTGTTTGCGAGAC 67
|||||| |||||| ||||| || ||||| | |||||||| || |||||||| ||||| |
Sbjct 38 GAGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGC 97
Query 68 CATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTATCTCAGAACCTTCAAGGTCGGCG 127
||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 98 CATTCAGGAAGAAGGGTTACATTCCACTCTCGACTTACCTGAGAACCTTCAAGGTCGGCG 157
Query 128 ATTACGTCGATGTCAAGGTTAATGGAGCTATTCACAAGGGTATGCCTCATAAGTTCTACC 187
||||||||||||| ||||| ||||| || || ||||||||||||||||| ||||||||||
Sbjct 158 ATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACC 217
Query 188 ATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACA 247
| |||||||||||||| |||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 218 ACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACA 277
Query 248 AACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGC 307
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 278 AACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGC 337
Query 308 AGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTG 367
| ||||| |||||||||||||| || || ||||||||| |||| |||| ||| |||||||
Sbjct 338 AATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCTG 397
Query 368 CAGCTAAAGCCAGA-GGAGAGACTATCAGCACGAAGAGACAGCCGAAAGGTCCCAAACCA 426
|||| ||||||| | || ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 398 CAGCCAAAGCCA-ATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCA 456
Query 427 GGTTTCATGGTTGAAGGTATGACATTGGAGACTGTTACTCCCATTCCTTACGATGTTGTC 486
|| |||||||| ||||| ||||| ||||||||||| ||||| || || |||||||| |||
Sbjct 457 GGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCGTACGATGTCGTC 516
Query 487 AACGATCTCAAGGGTGGCTATTGAGTT 513
|||||||||||||| ||||||| ||||
Sbjct 517 AACGATCTCAAGGGAGGCTATT-AGTT 542
> AT1G09590.1 | Symbols: | Translation protein SH3-like family
protein | chr1:3106502-3107772 FORWARD LENGTH=708
Length=708
Score = 601 bits (325), Expect = 3e-171
Identities = 447/507 (88%), Gaps = 3/507 (1%)
Strand=Plus/Plus
Query 8 GAGGAACAATGCCGGCGGGACACGGAGTAAGAGCGAGAACAAGAGATCTGTTTGCGAGAC 67
|||||| ||||||||| ||||| ||||| |||||||||| || |||||||| ||||| |
Sbjct 40 GAGGAAAAATGCCGGCTGGACATGGAGTTCGAGCGAGAACGAGGGATCTGTTCGCGAGGC 99
Query 68 CATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTATCTCAGAACCTTCAAGGTCGGCG 127
| ||||||||||||||||| ||||| || || ||||| || || ||||||||||||||||
Sbjct 100 CTTTCAGGAAGAAGGGTTACATTCCTCTATCGACTTACCTGAGGACCTTCAAGGTCGGCG 159
Query 128 ATTACGTCGATGTCAAGGTTAATGGAGCTATTCACAAGGGTATGCCTCATAAGTTCTACC 187
||||||||||||| ||||| ||||| || || ||||||||||||||||| ||||||||||
Sbjct 160 ATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACC 219
Query 188 ATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACA 247
|||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct 220 ATGGTCGTACTGGTCGTATCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACA 279
Query 248 AACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGC 307
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 280 AACAGATTGGGAACAGGATCATAAGGAAGAGGATTCATGTTCGTGTGGAGCATGTGCAGC 339
Query 308 AGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTG 367
||||||| ||||| |||||||| || || ||||||||| | ||||||| ||| |||||||
Sbjct 340 AGTCAAGATGTGCCGAGGAGTTCAAGCTGAGGAAGAAGAAAAACGATGAGCTCAAGGCTG 399
Query 368 CAGCTAAAGCCAGA-GGAGAGACTATCAGCACGAAGAGACAGCCGAAAGGTCCCAAACCA 426
|||| ||||||| | || ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 400 CAGCCAAAGCCA-ATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCA 458
Query 427 GGTTTCATGGTTGAAGGTATGACATTGGAGACTGTTACTCCCATTCCTTACGATGTTGTC 486
|| |||||||| ||||| ||||| ||||||||||| ||||| || || |||||||| |||
Sbjct 459 GGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCCTACGATGTCGTC 518
Query 487 AACGATCTCAAGGGTGGCTATTGAGTT 513
||||||||||| || ||||||| ||||
Sbjct 519 AACGATCTCAAAGGAGGCTATT-AGTT 544
> AT1G09486.1 | Symbols: | pseudogene, 60S ribosomal protein L21
(RPL21B), temporary automated functional assignment; blastp
match of 67% identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630
60S ribosomal protein L21 {Oryza sativa}
| chr1:3062430-3063731 REVERSE LENGTH=1302
Length=1302
Score = 344 bits (186), Expect = 5e-94
Identities = 202/210 (96%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43 AGAACAAGAGATCTGTTTGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 102
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 522
Query 103 TATCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 162
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TACCTCATAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 582
Query 163 AAGGGTATGCCTCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAG 222
|||||||| |||||||||||||||||| |||||| |||||| ||||||||| ||||||||
Sbjct 583 AAGGGTATTCCTCATAAGTTCTACCATAGTCGTATTGGTCGTATCTGGAATCTCACTAAG 642
Query 223 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 252
||||||||||||||||||||||||||||||
Sbjct 643 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 672
Score = 176 bits (95), Expect = 2e-43
Identities = 105/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 260 ACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGCAGTCAAGGTGTG 319
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 991 ACAGAATTATAAGGAAGAGGATACATGTACGTGTGGAGCATGTGCAACAGTCAAGGTGTG 1050
Query 320 CTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 369
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1051 ATGAGGAGTTTAATCTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 1100
> AT1G31355.1 | Symbols: | 60S ribosomal protein L21 (RPL21D),
pseudogene, similar to 60s ribosomal protein L21 GB:Q43291
from (Arabidopsis thaliana); blastp match of 74% identity and
3.6e-50 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S
ribosomal protein L21 {Oryza sativa} | chr1:11228988-11229990
FORWARD LENGTH=1003
Length=1003
Score = 322 bits (174), Expect = 2e-87
Identities = 198/210 (94%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43 AGAACAAGAGATCTGTTTGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 102
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 13 AGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCTACTCTCCACT 72
Query 103 TATCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 162
|| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 73 TACCTCATAACCTTCAAGGTCGGCGATTACGTCAATGTCAAGGTTAATGGAGCTATTCAC 132
Query 163 AAGGGTATGCCTCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAG 222
|||||||| |||||||||||||||||| |||||| |||||| ||||| ||| |||||| |
Sbjct 133 AAGGGTATTCCTCATAAGTTCTACCATAGTCGTATTGGTCGTATCTGAAATCTCACTACG 192
Query 223 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 252
||||||||||||||||||||||||||||||
Sbjct 193 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 222
Score = 176 bits (95), Expect = 2e-43
Identities = 111/119 (93%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 251 AGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGCAGT 310
||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 534 AGATTAAGAACAGAAACATAAGGAAGAGGATACATGTACGTGTGGAGCATGTGCAACAGT 593
Query 311 CAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 369
||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 594 CAAGGTGTGATGAGGAGTTTAATCTCTGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26825034498
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5