BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475462
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58025.2 | Symbols: | DNA-binding bromodomain-containing pr... 1910 0.0
> AT1G58025.2 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:21457667-21462243 REVERSE LENGTH=2046
Length=2046
Score = 1910 bits (1034), Expect = 0.0
Identities = 1511/1728 (87%), Gaps = 86/1728 (5%)
Strand=Plus/Plus
Query 1 ATGAAGCGTAAAAGAGGACATAAGAAAGGGAAGAAGTCTAAAAAGTCCAAATCTATTACT 60
||||||||||||||||||||||||||||||||||||||| ||| | |||| | |
Sbjct 210 ATGAAGCGTAAAAGAGGACATAAGAAAGGGAAGAAGTCT---AAG-----A-CTATCAAT 260
Query 61 GAAGAAGGGAACTTGAATGAGTCAACCGAAAACGTGGAGAATCAAACCTCGGAGCAGAGT 120
||| ||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| |||
Sbjct 261 GAACAAGGGAACTTGAACGAGTCAACTGAAAACGCGGAGAATCAAACCTCTGAGCATAGT 320
Query 121 TCTGAAGGTCCTGCTGAGTGTGAGAATAGTGAACATGAATCTAAAATGGAGGTTGATGCA 180
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 321 TCTGAAGCTCCTGTTGAGTGTGAGAATAGTGAACTTGAATCTAAAATGGAGGTTGATGCT 380
Query 181 CCTTCTTCTACTGAGATTGGTAATTCACCTATTGCTAGTGTAGATCCAGCTGATAATGTA 240
||||| | || ||| | | || |||||||||| |||||||||| ||
Sbjct 381 CCTTC-AC--CT---ATT-G--------C---TGGAAGTGTAGATCTAGCTGATAATATA 422
Query 241 GCGGCGAAGTC-AATGGGACGTGTTAAGGTTAAATTGAAGACCTCAAAAGCACCAGAA-C 298
||||| ||||| || | ||||||||||||||||||||||| || |||||||| ||| |
Sbjct 423 GCGGCCAAGTCTGTTGCG-CGTGTTAAGGTTAAATTGAAGACTTCGAAAGCACCTGAACC 481
Query 299 CAGATGAGACATGGCGTGATGATATTGATAAGAGTAGTTCTCAAGTGGGGTCT-GAAAAA 357
|| ||||||||| |||||||||||| ||||||||||||||||||| || || | ||||||
Sbjct 482 CA-ATGAGACATTGCGTGATGATATCGATAAGAGTAGTTCTCAAGCGGTGT-TAGAAAAA 539
Query 358 CCTGCTGTCCCTGCTGAGAAAAAGGAGGAATTGGTTCCTCCGCGTTTGCCTGAGAGAAAG 417
|||| ||| |||| |||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 540 CCTGTTGTGCCTGTTGAGAAAAAGGAGGAATTTGTTCCT---CGTTTGCCTGAGAGGAAG 596
Query 418 CCAGTGTTTCTGAATGTTTACAGGAAAACTAAGGGTATAAAGATTAAGTCTTCGAAGGCG 477
|| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 597 CCGGTGTTTCTGAATGTTTACAGGAAAACTAAAGGTATAAGGATAAAGTCTTCGAAGGCG 656
Query 478 GTAGATGGATCTAGCTCGGTTACTGAGACGAGTG---CTGATGCTGTCAAGGCCCAGGAT 534
|| ||||| ||||||||||||||||||| ||||| ||||| ||||||||| ||||||
Sbjct 657 GTTGATGGGTCTAGCTCGGTTACTGAGAAGAGTGCTACTGATACTGTCAAGGTTCAGGAT 716
Query 535 GCAAAT-GCACCTCAAAAGGATACAAAAACG-CTGGATGAGAATCCTCAAGCCAGTAAGA 592
| | | | ||| |||||||| |||||| || || |||||| ||||||| |||||||
Sbjct 717 G-TGGTAGTAGGTCAGAAGGATACGAAAACGTCT-GAGGAGAATTCTCAAGCTAGTAAGA 774
Query 593 AAGAGCCAGAAAGTGCACCAATTTCTTTGCCGAAAGAGGAGAAGAAGACTGACCAAAATT 652
||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||||||
Sbjct 775 AAGAGGCGGAAATTGCAACGATTTCTTTGCAGAAAGAGGAGAAGAAGACTGATCAAAATT 834
Query 653 CACGATACAATAAACAAGAACTGGAGGATTCTCTTACAGTGATCAAAAAGATTATGAAGA 712
|||||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 835 TACGATACAATAAGCAAGAACTGGAAGATTCTCTTATTGTGATCAAGAAGATTATGAAGA 894
Query 713 TGGATGCTGCTGATCCCTTTAATGCTCCTGTGAACCCAGAAGCTCTTGGAATTCCTGACT 772
|||| ||||||||||| ||||||| |||||| || |||||||||||||||||||||||||
Sbjct 895 TGGAGGCTGCTGATCCTTTTAATGTTCCTGTCAATCCAGAAGCTCTTGGAATTCCTGACT 954
Query 773 ATTTCGATATTATCAAGACACCTATGGATTTTGGAACAATATGCAATAATTTTGAAAAAA 832
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 955 ATTTCGATATTATCAAGACACCTATGGATTTTGGAACAATATGCAACAATTTTGAGAAAG 1014
Query 833 GCAACAAGTATATGAATTCTGAGGACGTTTACAAGGATGTCCAGTACATTTGGAATAACT 892
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 1015 GCAACAAGTATATGAATTCTGAGGATGTTTACAAGGATGTCAACTACATTTGGAATAACT 1074
Query 893 GTTCTAAGTACAATAAGAAAGGTGATTATATTGTGGATTTGATGAAGCGAGTAAAGAAAA 952
|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1075 GTTCCAAGTACAATAAGAAAGGTGATTATATTGTGGATCTGATGAAGCGAGTGAAGAAAA 1134
Query 953 ATTTCATGAAGTACTGGACTGCAGCAGGGTTGTACACTGA--A-TCAGCAGCAGAAAATA 1009
|||||||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||
Sbjct 1135 ATTTCATGAAGTACTGGACTTCAGCAGGGTTGTATACTGAGCAATCAGCAGCAGAAAATA 1194
Query 1010 CAGAGGATGGTGGGAAGTCATCCACCAAAGACAGTCAATCCAAGCAGAAGAGCCATAAAC 1069
|||| |||||||| ||| ||||||| |||| ||| || | || | ||||||
Sbjct 1195 CAGAAGATGGTGGAAAGGCATCCAC-AAAG-CAG--AA-----G-AGT----C-ATAAAC 1239
Query 1070 GCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGATATGTGTTTTGAAGCGACGTA 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1240 GCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGATATGTGTTTTGAAGCGTCGTA 1299
Query 1130 AAAGAGAACGTGAACGAGATTCTCAAGGACATTCTGGAGCACAAGAGGAATCTTCACCTG 1189
||||||||||||||||||||||| ||| || || | ||||| ||||||||||
Sbjct 1300 AAAGAGAACGTGAACGAGATTCT---GGAG---CT----CA-A-GAGGAGTCTTCACCTG 1347
Query 1190 CGGGAAGTCCGTCTGTGGATAATTCATCAATAAACATGGGTGAGGAGCA-GGACATGGAT 1248
||||||||||||||||||||||||||||| |||||||||||||||| || ||| || |||
Sbjct 1348 CGGGAAGTCCGTCTGTGGATAATTCATCAGTAAACATGGGTGAGGA-CATGGATATTGAT 1406
Query 1249 ATTGAT--GT----TGA-CAACAAAAC-C-GAGATCGTGGAACTAGATAGTCCGGTGTCA 1299
|||| | ||| ||| |||| | || |||||||||||||||||||||||||||
Sbjct 1407 GTTGACAAGAAACCTGAACAAGAAAAAACAGAAATCGTGGAACTAGATAGTCCGGTGTCA 1466
Query 1300 AAGAGACAAAGAGTGAATGAAGATAAACAAGAGGTGGAGGAAGAGGAAAATGTTGAAGTG 1359
|| | ||||||||||| |||| | |||||||||||||||||||||||||| || ||||||
Sbjct 1467 AAAACACAAAGAGTGATTGAAAACAAACAAGAGGTGGAGGAAGAGGAAAACGTCGAAGTG 1526
Query 1360 TAGAGTGAAAATAAAACCGAAGCTAATGTAGAGGATAAGACTCATTCGATTGATAGAGT- 1418
||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |
Sbjct 1527 GAGAGTGAAAATAAAACCAAAGCTAATGTAGAGGACAAGACTCAGTCGATTGATAGA-TC 1585
Query 1419 AACGGAAGAGACTGGCGATGAGCGTGTGACTAGTGCTGCAGAGAAATTGGTTGTTTTAGC 1478
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1586 AATGGAAGAGACTGGCGATGAGCCTGTGAATAGTGCTGCAGAGAAATTGGTTGTTTTAGC 1645
Query 1479 TTCCATTGAAGGTCCAAAATCGACTCATAAAGATGAGGAAGAGAAGGAAAAACAACTCCA 1538
|||| |||||||||||||||||||||| || || || |||||||||||||||| ||| ||
Sbjct 1646 TTCCCTTGAAGGTCCAAAATCGACTCAGAATGAGGAAGAAGAGAAGGAAAAACGACTTCA 1705
Query 1539 AGAGCAAAAGAAACGGCAGGAGTTGGAGCGTAAAGAATGGAGAATGAAGATGCAAGAAAA 1598
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1706 AGAGCAAAAGAAACGGCTGGAGTTAGAGCGTAAAGAATGGAGAATGAAGATGCAAGAAAA 1765
Query 1599 GTTCGAAGTCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAAGGACGA 1658
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1766 GTTCCAAGTCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAATGACAA 1825
Query 1659 CAATCACAATTCCGTGTGGAACGGACCTCATTCGCTGTTTAAACATCG 1706
||| ||||||||||| |||||||||||||| || ||||||| || |||
Sbjct 1826 CAACCACAATTCCGTATGGAACGGACCTCACTCACTGTTTAGACGTCG 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5