BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475471
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08025.1 | Symbols: | Protein of unknown function (DUF784) ... 364 2e-100
AT3G44115.1 | Symbols: | Protein of unknown function (DUF784) ... 353 3e-97
AT3G44117.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 348 2e-95
AT1G57760.1 | Symbols: | Protein of unknown function (DUF784) ... 342 7e-94
AT4G07515.1 | Symbols: | Protein of unknown function (DUF784) ... 331 2e-90
AT1G45223.1 | Symbols: | Protein of unknown function (DUF784) ... 331 2e-90
AT1G57775.1 | Symbols: | Protein of unknown function (DUF784) ... 326 7e-89
AT1G45221.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 326 7e-89
AT1G45227.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 315 2e-85
AT1G45225.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 315 2e-85
AT1G45211.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 283 4e-76
> AT4G08025.1 | Symbols: | Protein of unknown function (DUF784)
| chr4:4846798-4847379 FORWARD LENGTH=582
Length=582
Score = 364 bits (197), Expect = 2e-100
Identities = 223/236 (94%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 60
|||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 82 ATGGCTAAACTAATCTCCCATGTTACTGCGCTATTCATTGTTGTAGTTTTGGTGTGTGCG 141
Query 61 TTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTG 120
||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 142 TTTGTTCCTGCTTTTTCTGTAGAAGAAGCTGAAGCAAAATCATTATGGGACACTTGTCTC 201
Query 121 GTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACC 180
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 202 GTTAAAATCACTCCTAAATGTGCATTGAATATAATCGCGGTTGTTTTTGGAAATGGAACC 261
Query 181 CTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 262 CTCATTGAGTCTTGTTGCAAGGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 317
> AT3G44115.1 | Symbols: | Protein of unknown function (DUF784)
| chr3:15874991-15875442 FORWARD LENGTH=452
Length=452
Score = 353 bits (191), Expect = 3e-97
Identities = 222/237 (94%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 60
|||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1 ATGGCTAAACTAAGCTCTAATGTTACTGCGCTATTCATTGTTGTAGCTTTGATGTGTGCG 60
Query 61 TTTGTTCCTGCATTTTCAGT-AGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCT 119
|||||||||| | |||| || | ||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTTGTTCCTGTACTTTCTGTCA-AAGAAGCTGAAGCAAAATCATTATGGGACACTTGTCT 119
Query 120 GGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 AGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAATGGAAC 179
Query 180 CCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 180 CCTCATTGAGTCTTGTTGTCACGATCTTGTCCAAGAAGGAAAAGTATGTCACGATAA 236
> AT3G44117.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr3:15876726-15877074 FORWARD
LENGTH=349
Length=349
Score = 348 bits (188), Expect = 2e-95
Identities = 222/238 (93%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 60
|||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTAAACTAAGCACTAATGTTACTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
Query 61 TTTGTTCCTGCATTTTCAGTAG-AAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCT 119
|||||||||| | |||| || | ||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTTGTTCCTGTACTTTCTGT-GAAAGAAGCTGAAGCAAAATCATTATGGGACACTTGTCT 119
Query 120 GGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 AGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAATGGAAC 179
Query 180 CCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCAC-GATAA 236
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 180 CCTCATTGAGTCTTGTTGTCACGATCTTGTCCAAGAAGGAAAAGTATGTCACAGATAA 237
> AT1G57760.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:21390003-21390565 FORWARD LENGTH=563
Length=563
Score = 342 bits (185), Expect = 7e-94
Identities = 219/236 (93%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 60
|||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 80 ATGGCTAAACTAAGCTCCCATGTTACTGCGCTATTCATTGTTGCAACTTTGGTGTGTGCG 139
Query 61 TTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTG 120
||| |||||| | |||| || |||||||||||||||||| |||||||| ||||||||||
Sbjct 140 TTTATTCCTGTAATTTCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTGTCTC 199
Query 121 GTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACC 180
||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||
Sbjct 200 GTTAAAATCACTCCTAAATGTGCATTGAATATAATCTATGTTGTTTTTGGAAATGGAACC 259
Query 181 CTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CTCATTGAGTCGTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 315
> AT4G07515.1 | Symbols: | Protein of unknown function (DUF784)
| chr4:4314957-4315510 REVERSE LENGTH=554
Length=554
Score = 331 bits (179), Expect = 2e-90
Identities = 215/233 (92%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 4 GCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCGTTT 63
||||| |||| ||| |||||||||| |||||| || |||||||| |||||||||||||||
Sbjct 82 GCTAAACTAATCTCTCATGTTACTGTGCTATTTATGGTTGTAGCTTTGGTGTGTGCGTTT 141
Query 64 GTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTGGTT 123
||||||| |||||| || |||||||||||||||||| ||||| ||||||||||||| |||
Sbjct 142 GTTCCTGTATTTTCTGTCGAAGAAGCTGAAGCAAAATCATTAAGGGACACTTGTCTCGTT 201
Query 124 AAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACCCTC 183
|||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 202 AAAATCACTCCTAAATGTGCATTGAATATAATCACTGTTGTTTTTGGAAATGGAACCCTC 261
Query 184 ATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
|||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 262 ATTGAGGCTTGTTGCAACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 314
> AT1G45223.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:17141192-17141771 FORWARD LENGTH=580
Length=580
Score = 331 bits (179), Expect = 2e-90
Identities = 211/227 (93%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 10 CTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCGTTTGTTCCT 69
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 90 CTAAGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGCGTTTGTTCCT 149
Query 70 GCATTTTCAGTAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTGGTTAAAATC 129
| |||||| || |||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 150 GTATTTTCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTGTCTAGTTAAAATC 209
Query 130 ACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACCCTCATTGAG 189
|||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 210 ACTCCTAAATGTGCATTGAATATAATTTATGTTGTTTTTGGAAATGGAACCCTCATTGAG 269
Query 190 TCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
|||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 270 TCTTGTTGCCACGACCTTGTCCAAGAAGGAAAAGTGTGCCATGATAA 316
> AT1G57775.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:21399618-21400068 REVERSE LENGTH=451
Length=451
Score = 326 bits (176), Expect = 7e-89
Identities = 216/236 (92%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 60
|||||||| |||||||| |||||||| ||| |||||||||||||||| || |||||||||
Sbjct 1 ATGGCTAAACTAAGCTCTCATGTTACAGCGTTATTCATTGTTGTAGCTTTAGTGTGTGCG 60
Query 61 TTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTG 120
||| ||||| |||||| || |||||||||||||||||| |||||||| ||||||||||
Sbjct 61 TTTAATCCTGTATTTTCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTGTCTC 120
Query 121 GTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACC 180
||||||||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 121 GTTAAAATCACTCCTAAATGTGCATTGAATATAATCTATGTAGTTTTTGGAAATGGAACC 180
Query 181 CTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCATTGAGTCTTGCTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
> AT1G45221.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:17139448-17140012
FORWARD LENGTH=565
Length=565
Score = 326 bits (176), Expect = 7e-89
Identities = 217/237 (92%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 1 ATGGCTA-ATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGC 59
||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 85 ATGGCTAGGT-TAAGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGC 143
Query 60 GTTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCT 119
||||||||||| |||||| || |||||||||||||||||| |||||||| ||||||||||
Sbjct 144 GTTTGTTCCTGTATTTTCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTGTCT 203
Query 120 GGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAAC 179
||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct 204 AGTTAAAATCACTCCTAAATGTGCATTGAATATAATTTATGTTGTTTTTGGAAATGGAAC 263
Query 180 CCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
||||||||| ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 264 CCTCATTGAATCTTGTTGCTACGATCTTGTCCAAGAAGGAAAAGTGTGCCATGATAA 320
> AT1G45227.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr1:17144753-17145100 FORWARD
LENGTH=348
Length=348
Score = 315 bits (170), Expect = 2e-85
Identities = 215/237 (91%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 60
|||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 1 ATGGCTAAGCTAAGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTATGCG 60
Query 61 TTTGTTCCTGCATTTTCAGT-AGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCT 119
|||||||||| |||||| || | ||||||||||| ||||| |||||||| ||||||||||
Sbjct 61 TTTGTTCCTGTATTTTCTGTCA-AAGAAGCTGAAACAAAATCATTATGGAACACTTGTCT 119
Query 120 GGTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAAC 179
||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||
Sbjct 120 AGTTAAAATCACTCCTAAATGTGCATTAAATATAATTTATGTTGTTTTTGGAAATGGAAC 179
Query 180 CCTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
|||||||||||||||||||||||| |||||||||||||||||| |||| || |||||
Sbjct 180 CCTCATTGAGTCTTGTTGCCACGACCTTGTCCAAGAAGGAAAAATGTGCCATGATAA 236
> AT1G45225.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr1:17143007-17143354 FORWARD
LENGTH=348
Length=348
Score = 315 bits (170), Expect = 2e-85
Identities = 214/236 (91%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAATCTAAGCTCCCATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCG 60
||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTAGGCTAAGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
Query 61 TTTGTTCCTGCATTTTCAGTAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTG 120
|||||||||| |||||| || ||||||| |||||||||| |||||||| ||||||||||
Sbjct 61 TTTGTTCCTGTATTTTCTGTCGAAGAAGTTGAAGCAAAATCATTATGGAACACTTGTCTA 120
Query 121 GTTAAAATCACTCCTAAGTGTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACC 180
||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||
Sbjct 121 GTTAAAATCACTCCTAAATGTGCATTAAATATAATTTATGTTGTTTTTGGAAATGGAACT 180
Query 181 CTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
|||||||||||||||||||||||||||||||||||||| ||||| || || |||||
Sbjct 181 CTCATTGAGTCTTGTTGCCACGATCTTGTCCAAGAAGGGAAAGTATGGCATGATAA 236
> AT1G45211.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr1:17136065-17136392 FORWARD
LENGTH=328
Length=328
Score = 283 bits (153), Expect = 4e-76
Identities = 196/217 (90%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 20 ATGTTACTGCGCTATTCATTGTTGTAGCATTGGTGTGTGCGTTTGTTCCTGCATTTTCAG 79
|||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||| |
Sbjct 1 ATGTTATTGCGCTATTCACTGTTGTAGCTTTGGTGTGTGCGTTTGTTCCTGTATTTTTTG 60
Query 80 TAGAAGAAGCTGAAGCAAAAACATTATGGGACACTTGTCTGGTTAAAATCACTCCTAAGT 139
| |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |
Sbjct 61 TCGAAGAAGCTGAAGCAAAATCATTATGAAACACTTGTCTAGTTAAAATCACTCCTAAAT 120
Query 140 GTGCATTGAATATAATCGCTGTTGTTTTTGGAAACGGAACCCTCATTGAGTCTTGTTGCC 199
|| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||
Sbjct 121 TTGAATTGAATATAATTTATGTTGTTTTT-GAAATGGAACCCTCATTGAGTCTTGTTGCC 179
Query 200 ACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAA 236
|||||||||||||||||||||||||||| || |||||
Sbjct 180 ACGATCTTGTCCAAGAAGGAAAAGTGTGCCATGATAA 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10656762788
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5