BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475472
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-2... 2610 0.0
AT5G19780.1 | Symbols: TUA5 | tubulin alpha-5 | chr5:6687074-66... 1068 0.0
AT5G19770.1 | Symbols: TUA3 | tubulin alpha-3 | chr5:6682493-66... 1062 0.0
AT1G64750.3 | Symbols: DSS1(I) | deletion of SUV3 suppressor 1(... 180 4e-44
> AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-24052487
FORWARD LENGTH=1652
Length=1652
Score = 2610 bits (1413), Expect = 0.0
Identities = 1568/1643 (95%), Gaps = 9/1643 (1%)
Strand=Plus/Plus
Query 1 TTGTCCTTTCACATCTAAAAGCGGGAGACCCAAC--AACAACCATCTTCCTCGTGAAAAC 58
|||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||
Sbjct 1 TTGTCCTTTCACATCTAAAAGCGGGAGAGCCAACAAAACAACCTTCTTCCTCGCGAAAAC 60
Query 59 AGAGAGAAAGAGGAAGAAGAA-CAG--GTCCCTGAGAAATATTCGAACATGAGGGAGATC 115
||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||
Sbjct 61 AGAGAGAAAGAGGAAGAAGAAGAAGAAGTCTCTGAGAAATTTTCGAACATGAGGGAGATC 120
Query 116 ATTAGCATTCATATCGGACAAGCTGGTATTCAGGTTGGAAATTCTTGTTGGGAGCTTTAT 175
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 ATTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAATTCTTGTTGGGAGCTTTAT 180
Query 176 TGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGATAGTACTGTGGGTGTA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 181 TGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGATAGTACTGTTGGTGCA 240
Query 236 TGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGCTCAGGCCAACATGTTCCTCGG 295
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 TGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGCTCAGGCCAACATGTGCCTCGA 300
Query 296 GCTGTGTTTCTTGATCTCGAACCAACCGTCATTGATGAAGTAAGAACCGGCACTTACAGA 355
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GCTGTGTTTCTTGATCTCGAACCAACCGTCATTGACGAAGTAAGAACCGGCACTTACAGA 360
Query 356 CAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAGATGCAGCCAATAACTTTGCT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAGATGCAGCCAATAACTTTGCT 420
Query 416 AGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAA 480
Query 476 TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTGTTTAATGCTGTTGGGGGTGGA 535
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 481 TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTATTCAATGCTGTTGGGGGTGGA 540
Query 536 ACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGAAAGAAA 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 ACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGAAAAAAA 600
Query 596 TCTAAACTCGGTTTCACCATATACCCTTCTCCTCAGGTTTCTACAGCAGTTGTAGAGCCA 655
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 601 TCAAAACTCGGTTTCACCATCTACCCTTCTCCTCAGGTTTCTACAGCAGTTGTGGAGCCG 660
Query 656 TATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAACACACAGATGTTGTTGTTCTTTTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAACACACAGATGTTGTTGTTCTTTTG 720
Query 716 GACAATGAAGCCATATACGATATCTGCAGGAGATCTTTAGACATTGAGAGGCCTACGTAC 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GACAATGAAGCCATATACGATATCTGCAGGAGATCTTTAGACATTGAGAGGCCTACATAC 780
Query 776 ACCAATCTGAACCGCTTGATCTCCCAAACCATCTCTTCGCTTACAACTTCTCTGAGATTT 835
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 TCCAATTTGAACCGCTTGATCTCCCAAACCATCTCTTCGCTTACAACTTCTCTAAGATTT 840
Query 836 GACGGTGCCATCAACGTGGACATCACGGAGTTCCAGACCAACCTTGTACCTTACCCTCGG 895
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 GACGGTGCCATCAATGTGGACATCACCGAGTTCCAGACCAACCTTGTACCTTACCCTCGG 900
Query 896 ATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCATGAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCATGAG 960
Query 956 CAGTTCTCAGTCCCTGAGATCACGACTTCTGTCTTTGAACCCTCCAATATGATGGCCAAA 1015
||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 961 CAGTTTTCGGTCCCTGAGATCACGACTTCCGTCTTTGAACCCTCCAATATGATGGCTAAA 1020
Query 1016 TGTGACCCAAGGCATGGGAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGATGTTGTG 1075
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 TGTGACCCTAGGCATGGCAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGACGTTGTG 1080
Query 1076 CCTAAGGATGTCAATACAGCCGTTGCTGCCATCAAAACCAAGCGAACAATTCAGTTTGTT 1135
|| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1081 CCCAAGGATGTCAATACAGCCGTTGCTGCCATCAAAGCCAAACGAACAATTCAGTTTGTT 1140
Query 1136 GACTGGTGCCCAACTGGATTCAAATGCGGAATAAACTACCAGCCGCCTTCAGTTGTTCCA 1195
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1141 GACTGGTGCCCAACTGGATTCAAGTGCGGGATAAACTACCAGCCGCCTTCCGTTGTTCCA 1200
Query 1196 GGTGGTGACCTGGCGAAGGTTCAACGAGCAGTTTGCATGATCAGCAACAATACTGCAGTG 1255
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1201 GGTGGTGACCTGGCTAAGGTTCAACGAGCGGTTTGCATGATCAGCAATAATACTGCAGTT 1260
Query 1256 GCGGAAGTGTTCTCTCGCATAGACCACAAGTTTGATCTCATGTACTCCAAAAGAGCATTT 1315
|| ||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1261 GCTGAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTT 1320
Query 1316 GTCCATTGGTATGTAGGTGAAGGCATGGAAGAAGGAGAGTTCTCTGAGGCCCGTGAGGAT 1375
||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 1321 GTCCATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGAT 1380
Query 1376 CTTGCTGCTCTTGAGAAAGATTATGAGGAAGTTGGTGCAGAAGGAGCAGAGGATGACGAC 1435
|||||||| || ||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 1381 CTTGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCGGAGGACGACGAC 1440
Query 1436 GAAGAAGGCGATGAGTATTAGAAAGACACAAGAGTG-GTTTTCCATTGTTTCTTTCTTGT 1494
|||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 1441 GAAGAAGGCGATGAGTATTAGAAAGACACAAGAGTGTGTGTTCCCTTGTTTCTTTCTTGT 1500
Query 1495 GACA-TACAGCAACTATGTCTATGTGAATGTGATCTCTACAGTTATTTTGTGATGTTTTA 1553
|| | ||||| || ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1501 GA-AGTACAGTAATTATGTCTTTGTGAATGTGATCTCTACAGTTATTTTGTGATGTTT-A 1558
Query 1554 CGGGTCTCTCCCCTTTTATTTCTCATGTGTGTTTGCTAATGGATTGCATTTATAGTGCAT 1613
|||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||
Sbjct 1559 CGGGTCTCTCCCCTTTTATTTCTCATTTGTGTTTACTAAAGGATTGCATTTCTAGTGCAT 1618
Query 1614 CTCAATACAAAGTTTGAAGGATT 1636
||||||||| |||||||||||||
Sbjct 1619 CTCAATACATAGTTTGAAGGATT 1641
> AT5G19780.1 | Symbols: TUA5 | tubulin alpha-5 | chr5:6687074-6689171
FORWARD LENGTH=1736
Length=1736
Score = 1068 bits (578), Expect = 0.0
Identities = 1112/1371 (81%), Gaps = 32/1371 (2%)
Strand=Plus/Plus
Query 100 GAACATGAGGGAGATCATTAGCATTCATATCGGACAAGCTGGTATTCAGGTTGGAAATTC 159
||| |||||||| || ||||||||||||||||||||||| || || || || ||||||||
Sbjct 135 GAAGATGAGGGAAATTATTAGCATTCATATCGGACAAGCCGGGATCCAAGTCGGAAATTC 194
Query 160 TTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGA 219
|| ||||||||||| |||||||||||||| ||||| ||||| || | ||||| |||||
Sbjct 195 CTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGTGA 254
Query 220 TAGTACTGTGGGTGTATG-TCATGATGCATTCAACACATTCTTTAGCGAGAC--AAGCTC 276
|| ||| || ||||| || || ||||| ||||| || |||||||||||||| ||||
Sbjct 255 TACTACAGTTGGTGT-TGCACACGATGCGTTCAATACTTTCTTTAGCGAGACTGGAGCT- 312
Query 277 AGGCCAA-CATGTTCCTCGGGCTGTGTTTC-TTGATCTCGAACCAACCGTCATTGATGAA 334
|| || ||||||||| ||||||| ||| |||||||||| || ||||| || || |||
Sbjct 313 -GG-GAAGCATGTTCCTAGGGCTGT-CTTCGTTGATCTCGAGCCTACCGTTATCGACGAA 369
Query 335 GTAAGAACCGGCACTTACAGACAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAA 394
|| | || || |||||| | || ||||||||||| ||||| || || ||||| ||||||
Sbjct 370 GTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTCTGGGAAAGAA 429
Query 395 GATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACAC- 453
||||| || || ||||| |||||||| |||||||||||||||| ||||||||| || |
Sbjct 430 GATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAGGAAATTGTGGA-TCT 488
Query 454 CTGCCTTGAAAG-GCTGAGGAA-ATTGGCAGACAATTGCACAGGGTTACAAGGATTTTTG 511
|| ||||| | | ||||||| || || ||||| || || || |||||||| ||||||
Sbjct 489 ATGTCTTGACCGTG-TGAGGAAGCTT-GCCGACAACTGTACTGGCTTACAAGGGTTTTTG 546
Query 512 GTGTTTAATGCTGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGC 571
||||| ||||||||||| |||||||| |||||||| ||||||||| | || | |||||
Sbjct 547 GTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGCTAGAGCGT 606
Query 572 TTGTCCGTAGATTTTGGAAAGAAATCTAAACTCGGTTTCACCATATACCCTTCTCCTCAG 631
||||| ||||||| |||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 607 TTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAG 666
Query 632 GTTTCTACAGCAGTTGTAGAGCCATATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAA 691
|||||||| || ||||||||||| || |||||||| || || || ||||| ||||| |||
Sbjct 667 GTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCCTTCTTGAA 726
Query 692 CACACAGATGTTGTTGTTCTTTTGGACAATGAAGCCATATACGATATCTGCAGGAGATCT 751
|| || ||||| | ||| || ||||| || |||||||| || || || ||| | |||||
Sbjct 727 CATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCC 786
Query 752 TTAGACATTGAGAGGCCTACGTACACCAATCT-GAACCGCTTGATCTCCCAAACCATCTC 810
|||| || |||||||| || ||||| || || |||| | ||||| || || | ||| ||
Sbjct 787 CTAGATATCGAGAGGCCAACCTACACAAA-CTTGAACAGGTTGATATCACAGATCATTTC 845
Query 811 TTCGCTT-ACAACTTCTCTGAGATTTGACGGTGCCATCAACGTGGACATCACGGAGTTCC 869
|| ||| ||||| ||| |||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct 846 ATC-CTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGATATCACTGAGTTCC 904
Query 870 AGACCAACCTTGTACCTTA-CCCTCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTG 928
||||||| ||||| || || ||| || ||||| |||||||| || ||||||||||| ||
Sbjct 905 AGACCAATCTTGTCCCATATCCC-CGTATCCATTTCATGCTGTCATCTTATGCACCAGTC 963
Query 929 ATTTCATCTGCAAAGGCCTACCATGAGCAGTTCTCAGTCCCTGAGATCACGACTTCTGTC 988
|| ||| | || ||||| ||||| |||||| | ||||||||||||||||| | | | ||
Sbjct 964 ATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGATCACCAATGCCGTG 1023
Query 989 TTTGAACCCTCCAATATGATGGCCAAA-TGTGACCCAAGGCATGGGAAGTACATGGCTTG 1047
||||| || | | |||||||| ||| |||||||||||||| || ||||||||||| ||
Sbjct 1024 TTTGAGCCAGCGAGCATGATGGC-AAAGTGTGACCCAAGGCACGGAAAGTACATGGCATG 1082
Query 1048 CTGTTTGATGTATCGTGGTGATGTTGTGCCTAAGGATGTCAATACAGCCGTTG-CTGCCA 1106
||||||||||| || || |||||||| || || ||||| ||| | ||||||| | |||
Sbjct 1083 TTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGCCGTTGGCA-CCA 1141
Query 1107 TCAAAACCAAGCGAACAATTCAGTTTGTTGACTGGTGCCCAACTGGATTCAAATGCGGAA 1166
|||| || ||| | || |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1142 TCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGGAA 1201
Query 1167 TAAACTACCAGCCGCCTTCAGTTGTTCCAGGTGGTGACCTGGCGAAGGTTCA-ACGAGCA 1225
| |||||||| || || |||||||||||||||||||||| || |||||||| | ||||
Sbjct 1202 TCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGA-GAGCT 1260
Query 1226 GTTTGCATGATCAGCAACAATACTGCAGTGGCGGAAGTGTTCTCTCGCATAGACCACAAG 1285
|| ||||||||||| ||||| || ||||| || || |||||||| || || |||||||||
Sbjct 1261 GTATGCATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGATCGACCACAAG 1320
Query 1286 TTTGATCTCATGTACTCCAAA-AGAGCATTTGTCCATTGGTATGTAGGTGAAGGCATGGA 1344
|||||||||||||| | | || || ||||| || || ||||| || |||||||| |||||
Sbjct 1321 TTTGATCTCATGTA-TGCGAAGAGGGCATTCGTGCACTGGTACGTTGGTGAAGGAATGGA 1379
Query 1345 AGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTG-CTGCTCTTGAGAAAGATTATGAGG 1403
||||| || ||||||||||| ||||| || |||| | || || |||||||| || || |
Sbjct 1380 GGAAGGTGAATTCTCTGAGGCACGTGAAGA-CTTGGCCGCACTGGAGAAAGACTACGAAG 1438
Query 1404 AAGTTGGTGCAGAAGGAGCAGAGGATGACGACGAAGAAGGCGATGAGTATT 1454
|||||||||| ||||| | ||| ||||| || || ||||| || || ||||
Sbjct 1439 AAGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATT 1489
> AT5G19770.1 | Symbols: TUA3 | tubulin alpha-3 | chr5:6682493-6684579
REVERSE LENGTH=1726
Length=1726
Score = 1062 bits (575), Expect = 0.0
Identities = 1111/1371 (81%), Gaps = 32/1371 (2%)
Strand=Plus/Plus
Query 100 GAACATGAGGGAGATCATTAGCATTCATATCGGACAAGCTGGTATTCAGGTTGGAAATTC 159
||| ||| | || ||||| |||||||| |||||||||||||| || ||||| ||||||||
Sbjct 102 GAAGATGCGAGAAATCATAAGCATTCACATCGGACAAGCTGGGATCCAGGTCGGAAATTC 161
Query 160 TTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGA 219
|||||||||||||| |||||||||||||| ||||| || || || | ||||| |||||
Sbjct 162 GTGTTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCGGACGGAATGATGCCGAGTGA 221
Query 220 TAGTACTGTGGGTGTATG-TCATGATGCATTCAACACATTCTTTAGCGAGACAAGCT-CA 277
|| ||| || ||||| || || ||||| ||||| || |||||||||||||| | | |
Sbjct 222 TACTACAGTTGGTGT-TGCACACGATGCGTTCAATACTTTCTTTAGCGAGAC-TGGTGCT 279
Query 278 GGCCAA-CATGTTCCTCGGGCTGTGTTTC-TTGATCTCGAACCAACCGTCATTGATGAAG 335
|| || ||||| ||| ||||||| ||| |||||||||| || ||||| || || ||||
Sbjct 280 GG-GAAGCATGTCCCTAGGGCTGT-CTTCGTTGATCTCGAGCCTACCGTTATCGACGAAG 337
Query 336 TAAGAACCGGCACTTACAGACAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAG 395
| | || || |||||| | || ||||||||||| ||||| || || ||||| |||||||
Sbjct 338 TTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTCTGGGAAAGAAG 397
Query 396 ATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTT-GGAAGGGAAATTGTTGACAC- 453
|||| || || ||||| |||||||| |||||||||||| |||| ||||||||| || |
Sbjct 398 ATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGGAA-GGAAATTGTGGA-TCT 455
Query 454 CTGCCTTGAAAG-GCTGAGGAAA-TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTG 511
|| ||||| | | |||||||| || || ||||| || || || |||||||| ||||||
Sbjct 456 ATGTCTTGACCGTG-TGAGGAAACTT-GCCGACAACTGTACTGGCTTACAAGGGTTTTTG 513
Query 512 GTGTTTAATGCTGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGC 571
||||| ||||||||||| |||||||| |||||||| ||||||||| | || | |||||
Sbjct 514 GTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGCTAGAGCGT 573
Query 572 TTGTCCGTAGATTTTGGAAAGAAATCTAAACTCGGTTTCACCATATACCCTTCTCCTCAG 631
||||| ||||||| ||||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 574 TTGTCTGTAGATTATGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAG 633
Query 632 GTTTCTACAGCAGTTGTAGAGCCATATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAA 691
|||||||| || |||||||| || || |||||||||||||| || ||||| ||||| |||
Sbjct 634 GTTTCTACTGCTGTTGTAGAACCTTACAACAGTGTTCTCTCAACGCATTCCCTTCTTGAA 693
Query 692 CACACAGATGTTGTTGTTCTTTTGGACAATGAAGCCATATACGATATCTGCAGGAGATCT 751
|| || ||||| | ||| || ||||| || |||||||| || || || ||| | |||||
Sbjct 694 CATACGGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCC 753
Query 752 TTAGACATTGAGAGGCCTACGTACACCAATCT-GAACCGCTTGATCTCCCAAACCATCTC 810
|||| || |||||||| || ||||| || || |||| | ||||| || || | ||| ||
Sbjct 754 CTAGATATCGAGAGGCCAACCTACACAAA-CTTGAACAGGTTGATATCACAGATCATTTC 812
Query 811 TTCGCTT-ACAACTTCTCTGAGATTTGACGGTGCCATCAACGTGGACATCACGGAGTTCC 869
|| ||| ||||| ||| |||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct 813 ATC-CTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGATATCACTGAGTTCC 871
Query 870 AGACCAACCTTGTACCTTA-CCCTCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTG 928
||||||| ||||| || || ||| || ||||| |||||||| || ||||||||||| ||
Sbjct 872 AGACCAATCTTGTCCCATATCCC-CGTATCCATTTCATGCTGTCATCTTATGCACCAGTC 930
Query 929 ATTTCATCTGCAAAGGCCTACCATGAGCAGTTCTCAGTCCCTGAGATCACGACTTCTGTC 988
|| ||| | || ||||| ||||| |||||| | ||||||||||||||||| | | | ||
Sbjct 931 ATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGATCACCAATGCCGTT 990
Query 989 TTTGAACCCTCCAATATGATGGCCAAA-TGTGACCCAAGGCATGGGAAGTACATGGCTTG 1047
||||| || | | |||||||| ||| |||||||| || || || ||||||||||| ||
Sbjct 991 TTTGAGCCAGCTAGCATGATGGC-AAAGTGTGACCCGAGACACGGAAAGTACATGGCCTG 1049
Query 1048 CTGTTTGATGTATCGTGGTGATGTTGTGCCTAAGGATGTCAATACAGCCGTTG-CTGCCA 1106
||||||||||| || || |||||||| || || ||||| ||| | || |||| | |||
Sbjct 1050 TTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGCTGTTGGCA-CCA 1108
Query 1107 TCAAAACCAAGCGAACAATTCAGTTTGTTGACTGGTGCCCAACTGGATTCAAATGCGGAA 1166
|||| || ||| | || |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1109 TCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGGAA 1168
Query 1167 TAAACTACCAGCCGCCTTCAGTTGTTCCAGGTGGTGACCTGGCGAAGGTTCA-ACGAGCA 1225
| |||||||| || || |||||||||||||||||||||| || |||||||| | ||||
Sbjct 1169 TCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGA-GAGCT 1227
Query 1226 GTTTGCATGATCAGCAACAATACTGCAGTGGCGGAAGTGTTCTCTCGCATAGACCACAAG 1285
|| || |||||||| ||||| || ||||| || || |||||||| || || |||||||||
Sbjct 1228 GTATGTATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGATCGACCACAAG 1287
Query 1286 TTTGATCTCATGTACTCCAAA-AGAGCATTTGTCCATTGGTATGTAGGTGAAGGCATGGA 1344
|||||||||||||| | | || || ||||||||||| ||||| || |||||||| |||||
Sbjct 1288 TTTGATCTCATGTA-TGCGAAGAGGGCATTTGTCCACTGGTACGTTGGTGAAGGAATGGA 1346
Query 1345 AGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTG-CTGCTCTTGAGAAAGATTATGAGG 1403
||||| || ||||||||||| ||||| || |||| | || || ||||||||||| || |
Sbjct 1347 GGAAGGTGAATTCTCTGAGGCACGTGAAGA-CTTGGCCGCACTGGAGAAAGATTACGAAG 1405
Query 1404 AAGTTGGTGCAGAAGGAGCAGAGGATGACGACGAAGAAGGCGATGAGTATT 1454
|||||||||| ||||| | ||| ||||| || || ||||| || || ||||
Sbjct 1406 AAGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATT 1456
> AT1G64750.3 | Symbols: DSS1(I) | deletion of SUV3 suppressor
1(I) | chr1:24052362-24053908 REVERSE LENGTH=879
Length=879
Score = 180 bits (97), Expect = 4e-44
Identities = 110/116 (95%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 1521 ATGTGATCTCTACAGTTATTTTGTGATGTTTTACGGGTCTCTCCCCTTTTATTTCTCATG 1580
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 879 ATGTGATCTCTACAGTTATTTTGTGATG-TTTACGGGTCTCTCCCCTTTTATTTCTCATT 821
Query 1581 TGTGTTTGCTAATGGATTGCATTTATAGTGCATCTCAATACAAAGTTTGAAGGATT 1636
||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 820 TGTGTTTACTAAAGGATTGCATTTCTAGTGCATCTCAATACATAGTTTGAAGGATT 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80873077995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5