BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475473
Length=524
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45010.1 | Symbols: ATDSS1(V), DSS1(V) | DSS1 homolog on chr... 412 1e-114
AT1G64750.3 | Symbols: DSS1(I) | deletion of SUV3 suppressor 1(... 344 5e-94
> AT5G45010.1 | Symbols: ATDSS1(V), DSS1(V) | DSS1 homolog on chromosome
V | chr5:18167244-18168374 REVERSE LENGTH=582
Length=582
Score = 412 bits (223), Expect = 1e-114
Identities = 407/489 (83%), Gaps = 40/489 (8%)
Strand=Plus/Plus
Query 48 ACTTGGA-AAATTGATCGAGTTTTCGTCTTCTTCTTCTTAGG---TTTTCTCGATCTGGT 103
||||||| |||| |||||| ||| || ||||||||||||| |||||||||||||||
Sbjct 71 ACTTGGAGGAATTAATCGAG-TTTGGTGATCTTCTTCTTAGGTTTTTTTCTCGATCTGGT 129
Query 104 TG----G-TT---C--CTTTAACCTATGGCGACAGAACCGAAGGCGGCGACTGCT-GAAG 152
|| | || | || ||| |||||||| ||||||| ||||| | ||| | ||||
Sbjct 130 TGATTTGCTTAAACATCTGTAA-CTATGGCGGCAGAACCCAAGGC--AG-CTG-TCGAAG 184
Query 153 TGGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAG 212
|||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TGGTGAAGGTGGATCTATTCGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAG 244
Query 213 ATTGGTTGGAGAAAGAAGAAGTCAAGGAAGTTAGCCAGCAGTGGGAAGATGATTGGGATG 272
|||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 245 ATTGGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCTGCAGTGGGAAGATGACTGGGATG 304
Query 273 ATGATGATGTCAATGACGACTTCTCGCGTCAGTTAAGGAAGGAGCTTGAGAATGGTATTG 332
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 305 ATGATGATGTCAGTGACGACTTCTCGCGTCAGTTAAAGAAGGAGCTTGAGAATGCTAGTG 364
Query 333 AGAAGAAATGAGGTCGAAGATTATGA-AAAG-CAGGTTTTCACATTCAGGAAATCTTGG- 389
||||||||||||||| |||||| || |||| ||||| ||| |||| ||| || |||||
Sbjct 365 AGAAGAAATGAGGTCCAAGATTGCGAGAAAGGCAGGTCTTCTCATTTAGGGAACCTTGGC 424
Query 390 TTTTCTTGTATGA-TCTGGAAC-TTTG-TTT---G-A--ATTGCATCCTTTGT--TTTTC 438
|||| |||| ||| | || | | |||| ||| | | || | ||| || | |||||
Sbjct 425 TTTT-TTGTTTGAAT-TGCATCCTTTGGTTTATCGTAGCAT-GTATCGGTTCTCCTTTTC 481
Query 439 -TTTGCACATTTTACTCTTCCTTGGATGCAGATTCCCTTGTCTTTGAAGATGATAAATTT 497
||| |||||| |||||||||||||||||| ||| | | |||||||||||||||||||||
Sbjct 482 CTTTACACATTATACTCTTCCTTGGATGCAAATTTC-TCGTCTTTGAAGATGATAAATTT 540
Query 498 GAACTGATA 506
|| ||||||
Sbjct 541 GAGCTGATA 549
> AT1G64750.3 | Symbols: DSS1(I) | deletion of SUV3 suppressor
1(I) | chr1:24052362-24053908 REVERSE LENGTH=879
Length=879
Score = 344 bits (186), Expect = 5e-94
Identities = 291/337 (86%), Gaps = 25/337 (7%)
Strand=Plus/Plus
Query 211 AGATTGGTTGGAGAAAGAAGAAGTCAAGGAAGTTAGCCAGCAGTGGGAAGATGATTGGGA 270
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 322 AGATTGGTTGGAGAAAGAAGAAGTGAAGGAAGTTAGCCAGCAGTGGGAAGATGACTGGGA 381
Query 271 TGATGATGATGTCAATGACGACTTCTCGCGTCAGTTAAGGAAGGAGCTTGAGAATGGTAT 330
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 382 TGATGATGATGTCAATGACGACTTCTCACGTCAGTTAAGGAAGGAGCTTGAGAATGGTAC 441
Query 331 TGAGAAGAAATGAGGTCGAAGATTATGAAA-AGCAGGTTTTCACATTCAGGAAATCTTGG 389
||| ||||||| |||||||||||| ||||| | ||||| |||||||| ||||||||||||
Sbjct 442 TGACAAGAAATAAGGTCGAAGATTGTGAAAGA-CAGGTCTTCACATTTAGGAAATCTTGG 500
Query 390 TTTTCTTGTATGATCTGGAACTTTGTTTGAATTGCATCCTTTG-TTT-T-T---C--TT- 440
||||||| ||||||||||||||||||||| | ||||||||||| ||| | | | ||
Sbjct 501 TTTTCTTTTATGATCTGGAACTTTGTTTGTACTGCATCCTTTGGTTTATGTTATCGGTTC 560
Query 441 TGC-----------ACATTTTACTCTTCCTTGGATGCAGATTCCCTTGTCTTTGAAGATG 489
||| |||||||||| |||| |||||| | ||| | || ||||||||||||
Sbjct 561 TGCTTTTCCTTTGCACATTTTACTATTCCCTGGATGGAAATTTC-TTATCTTTGAAGATG 619
Query 490 ATAAATTTGAACTGATAA--TCACCATCTTCTCTCAA 524
|||||||| ||||| ||| ||| |||||||||||||
Sbjct 620 ATAAATTTAAACTGGTAAGATCATCATCTTCTCTCAA 656
Score = 167 bits (90), Expect = 1e-40
Identities = 125/140 (89%), Gaps = 10/140 (7%)
Strand=Plus/Plus
Query 86 AGGTTTTCTCGATCTGGTTGGTTCCTTT---AA-C-----CTATGGCGACAGAACCGAAG 136
||||| |||||||||||||||||||||| || | |||||||| |||||||||||
Sbjct 65 AGGTTATCTCGATCTGGTTGGTTCCTTTAACAATCTGTAACTATGGCGGCAGAACCGAAG 124
Query 137 GCGGCGACTGCTGAAGTGGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAA 196
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GCAGCGACTGCTGAAGTAGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAA 184
Query 197 TTTGAAATCAACGAAGATTG 216
|||||||| ||||||| |||
Sbjct 185 TTTGAAATTAACGAAG-TTG 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25066839353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5