BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475481 Length=348 Score E Sequences producing significant alignments: (Bits) Value AT1G64800.1 | Symbols: | DNA binding;sequence-specific DNA bin... 560 3e-159 > AT1G64800.1 | Symbols: | DNA binding;sequence-specific DNA binding transcription factors | chr1:24085086-24085433 FORWARD LENGTH=348 Length=348 Score = 560 bits (303), Expect = 3e-159 Identities = 333/348 (96%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 1 ATGGAGGGTTCGTCTACAAGCCATAAACGCAAGAAAAATGACGATCATACTAAGAAGAGC 60 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGAGGGTTCGTCTACAAGCCACAAACGCAAGAAAAATGACGAGCATACTAAGAAGAGC 60 Query 61 AAGAAGAGACAACATGTGAGAGCCAGCAATGTAGAAAACAAGATGGAGGAGAAGAGAAGT 120 ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 61 AAGAAAAGACAACATGTGAGAGCCAACAATGTAGAAAACAAGATGGAAGAGAAGAGAAGT 120 Query 121 GGGAGTAATGAGGAGAGTTTCGGAGTGTTTGAGTTCCCGTGGATGAAGGAGAGTATGATC 180 ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 121 GGGAGTAATGAAGAGAGTTTGGGAGTTTTTGAGTTCCCGTGGATGAAGGAGAGTATGATC 180 Query 181 TCGACCTCCCTCGATTGGAGTCTACCGGAATCTCTTTTTCCGGTTTTAGATGATGGTAAT 240 || ||||| || ||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct 181 TCAACCTCACTTGATTGGAGTCTACCGGAATCTATGTTTCCGGTCTTAGATGATGGTAAT 240 Query 241 GAGATGTTTGAAGAGATTAGTGATGTGAGATGGCCAGTGAAAAGGGTTAGTAATTATAGG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAGATGTTTGAAGAGATTAGTGATGTGAGATGGCCAGTGAAAAGGGTTAGTAATTATAGG 300 Query 301 TTGGAGTTTGAGGCCTTTGAATGCATTTGGACTTCTATTTTGGATTAG 348 |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 TTGGAGTTTGAGGCTTTTGAATGCATTTGGACTTCTATTTTGGATTAG 348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16286750676 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5