BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475481

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64800.1 | Symbols:  | DNA binding;sequence-specific DNA bin...   560    3e-159


> AT1G64800.1 | Symbols:  | DNA binding;sequence-specific DNA binding 
transcription factors | chr1:24085086-24085433 FORWARD 
LENGTH=348
Length=348

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 333/348 (96%), Gaps = 0/348 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGGTTCGTCTACAAGCCATAAACGCAAGAAAAATGACGATCATACTAAGAAGAGC  60
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGAGGGTTCGTCTACAAGCCACAAACGCAAGAAAAATGACGAGCATACTAAGAAGAGC  60

Query  61   AAGAAGAGACAACATGTGAGAGCCAGCAATGTAGAAAACAAGATGGAGGAGAAGAGAAGT  120
            ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  61   AAGAAAAGACAACATGTGAGAGCCAACAATGTAGAAAACAAGATGGAAGAGAAGAGAAGT  120

Query  121  GGGAGTAATGAGGAGAGTTTCGGAGTGTTTGAGTTCCCGTGGATGAAGGAGAGTATGATC  180
            ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  121  GGGAGTAATGAAGAGAGTTTGGGAGTTTTTGAGTTCCCGTGGATGAAGGAGAGTATGATC  180

Query  181  TCGACCTCCCTCGATTGGAGTCTACCGGAATCTCTTTTTCCGGTTTTAGATGATGGTAAT  240
            || ||||| || ||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct  181  TCAACCTCACTTGATTGGAGTCTACCGGAATCTATGTTTCCGGTCTTAGATGATGGTAAT  240

Query  241  GAGATGTTTGAAGAGATTAGTGATGTGAGATGGCCAGTGAAAAGGGTTAGTAATTATAGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GAGATGTTTGAAGAGATTAGTGATGTGAGATGGCCAGTGAAAAGGGTTAGTAATTATAGG  300

Query  301  TTGGAGTTTGAGGCCTTTGAATGCATTTGGACTTCTATTTTGGATTAG  348
            |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  301  TTGGAGTTTGAGGCTTTTGAATGCATTTGGACTTCTATTTTGGATTAG  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5