BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475487
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64880.1 | Symbols: | Ribosomal protein S5 family protein |... 2837 0.0
> AT1G64880.1 | Symbols: | Ribosomal protein S5 family protein
| chr1:24105642-24109146 FORWARD LENGTH=1985
Length=1985
Score = 2837 bits (1536), Expect = 0.0
Identities = 1780/1894 (94%), Gaps = 31/1894 (2%)
Strand=Plus/Plus
Query 1 AAAAATCATTTCTGTCTTCTCGAAGGTTTTTGAAATTTCTCTCTTCCATTTCCATCTGAT 60
|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAAATCATTTCAGTCTTCTC-AAGGTTTTTGAAATTTCTATCTTCCATTTCCATCTGAT 59
Query 61 GAATCTCTGACTGACGATGTCTTTGAGAACTCGAGCATCGTCCTGGCCTCGTCTTCTACT 120
||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 60 GAA--TCT--CTGACGATGTCTTTGAGAACTCGAGCATCGTCATGGCCTCGTCTTCTACT 115
Query 121 TCGCCGGAACCCTAGATCTTCATTTTCCCGTCAAATCTCTACTCTTGATTCCTCAACATC 180
||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct 116 TCGCCGGAACCCTAGATCTTCATTTTCTCGTCAGATATCTACTCTCGATTCCTCAACATC 175
Query 181 CACATTTCCCAGAAGAATCTCCGGTTACTCCTCCTCCTCGTTC---CCCGTAAATCATAC 237
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||
Sbjct 176 AACATTTCCCAGAAGAATCTCCGGTTACTACTCCTCCTCCTTCTTTCCCGTAAATCAAAC 235
Query 238 GCCATGGATCTCATCTCAGAGGTACCGTTTCTTTTCCTCATTCACAATGTCACCATCGGA 297
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 236 GCCATGGATCTCATCTCAGAGGTACCGTTTCTTCTCCTCAAGCACAATGTCACCATCGGA 295
Query 298 AGCTGATagagtagtgagagatcttatagcggaggttgagaaagagaagcagcgtgagag 357
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 296 AGCTGATAGAGTAGTGAGAGAACTTATAGCAGAGGTTGAGAAAGAGAAGCAGCGTGAGAG 355
Query 358 agaggagagGCAAAGACAAGGACTTGATTACAAAGACATTGATGCCGAAGACGAGGAGGA 417
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 356 AGAGGAGAGACAAAGACAAGGACTTGATTACAAAGACATTGATGCCGAAGACGAAGAAGA 415
Query 418 TTACTTAGGGATTGAGCCGTTTATCGAGAAGCTTAAGAAGCAGAATTTGAAAGATGATGG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTACTTAGGGATTGAGCCGTTTATCGAGAAGCTTAAGAAGCAGAATTTGAAAGATGATGG 475
Query 478 TGAATTAAACAGGCGTGAAGAGTCGTCTGATTCTGATAGTGAATATGATGAGATTGATTT 537
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 476 TGAATTAAATAGGCGTGAAGAGTCTTCTGATTCGGATAGTGAATATGATGAGATTGATTT 535
Query 538 GGATGAAGAAAGGAAGAAAGAAGACATCTTTAATAAGAAGTTTCAGAGGCATAAGGAGCT 597
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 536 GGATGAAGAGAGGAAGAAAGAAGATATCTTTAATAAGAAGTTTCAGAGACATAAGGAGCT 595
Query 598 TCTTCAGACTCTTACCAAGTCAGAGACACTTGATGAGACGTTTAGGTGGATGAACAAATT 657
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 596 TCTTCAGACTCTTACCAAGTCAGAGACACTTGATGAGGCATTTAGATGGATGAACAAATT 655
Query 658 AGACAAATTTGAGGAGAAGCATTTCAAGCTTAGACCTGAGTATAGGGTTATTGGTGAGCT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGACAAATTTGAGGAGAAGCATTTCAAGCTTAGACCTGAGTATAGGGTTATTGGTGAGCT 715
Query 718 GATGAATCGTTTGAAGGTAGCTGAAGGGAAAGAAAAGTTTGTTCTACAGCAGAAATTGAA 777
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 716 GATGAATCGTTTGAAGGTAGCTGAAGGGAAAGAGAAGTTTGTTCTGCAGCAGAAATTGAA 775
Query 778 TAGAGCTATGAGGTTGGTTGAGTGGAAAGAGGCTTTTGATCCAAACAATCCTGCTAATTA 837
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 TAGAGCTATGAGGTTGGTTGAGTGGAAAGAGGCTTTTGATCCAAACAACCCTGCTAATTA 835
Query 838 TGGAGTTATCGAACGTGATAATGTTCAAGGTGGTGGTGAGGAAAGAGAAGAGCGTCTTGT 897
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 836 TGGAGTTATTGAACGTGATAATGTTCAAGGTGGTGGTGAAGAAAGAGAAGAGCGTCTTGT 895
Query 898 TGTTGATGGGTCTAAGgatgacaatgatgatgatgatgatgaagaggagtttgatgatat 957
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 896 TGCTGATGGGCCTAAGGATGACAATGATGATGATGATGATGAAGAGGAGTTTGATGACAT 955
Query 958 gaAAGAAAGGGACGATATTCTT-TTGGAGAAGCTGAATGCAATTGACAAGAAACTTGAGC 1016
|||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 956 GAAAGAAAGGGATGATATT-TTGTTGGAGAAGCTGAATGCGATTGACAAGAAACTTGAGA 1014
Query 1017 TTAAGCTTTCTGAGCTTGATCATACATTTGGAAAGAAGGGGAAACGGTTGGAAGAGGAGA 1076
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1015 TTAAGCTTTCTGAGCTTGATCATACCTTTGGGAAGAAGGGGAAACGGTTGGAAGAGGAGA 1074
Query 1077 TTAGAGAACTGGCTGAAGACAGAAATGCTTTGACAGAGAAGAAAAGGCAACCGTTATACA 1136
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1075 TTAGAGAGCTGGCTGAAGACAGAAATGCTTTGACAGAGAAGAAAAGACAACCTTTATACA 1134
Query 1137 GAAAAGTATATGATGTGCATGTGATAGATGTTAAAAAAGTT-GCTAAGGTCACAAAGGGT 1195
|||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1135 GAAAAGGATATGATGTGCATGTGATAGATGTAAAAAAAGTTTG-TAAGGTCACAAAGGGT 1193
Query 1196 GGCAGGGTTGAAAGGTACACTGCATTGATGGTTTGCGGAAATTATGAAGGTGTCATTGGG 1255
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1194 GGCAGGGTTGAAAGGTACACTGCATTGATGGTTTGCGGAAACTATGAAGGTATCATTGGG 1253
Query 1256 TATGCGAAAGCAAAAGCTGAGACTGGCCAATCTGCAATGCAGAAGGCGTATGAGAAATGC 1315
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1254 TATGCAAAAGCAAAAGCTGAGACTGGCCAATCTGCAATGCAGAAGGCATATGAGAAATGC 1313
Query 1316 TTTCAGAATCTTCATTACGTAGAGCGGCATGAGGAGCACACCATTGCACACGCAATACAG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TTTCAGAATCTTCATTACGTAGAGCGGCATGAGGAGCACACCATTGCACACGCAATACAG 1373
Query 1376 ACTTCTTACAAGAAAACCAAGTTATATCTATGGCCTGCACCAACAACGACGGGAATGAAA 1435
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1374 ACTTCTTACAAGAAAACCAAGTTATATCTGTGGCCTGCACCAACCACGACGGGAATGAAA 1433
Query 1436 GCTGGGAGAGTTGTCAAAACAATCTTGCTCCTGGCGGGGTTCAAAAACATCAAATCAAAG 1495
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 1434 GCTGGGAGAGTTGTCAAAACAATCTTGCTCCTAGCAGGGTTCAAAAATATCAAATCAAAG 1493
Query 1496 GTGATTGGTTCAAGGAACTCATACAACACCGTTAAGGCGGTTTTGAAGGCCTTGAATGCG 1555
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1494 GTGATTGGTTCAAGGAATTCATACAACACCGTTAAGGCAGTGTTGAAGGCCTTGAATGCG 1553
Query 1556 GTCGAAACGCCAAAGGATGTTCAGGAGAAGTTTGGCCGGACAGTTGTTGAGAAATATCTG 1615
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GTCGAAACACCAAAGGATGTTCAGGAGAAGTTTGGCCGGACAGTTGTTGAGAAATATCTG 1613
Query 1616 CTGTGAGATCTGCA-TTCACGC-TATTGG-TATGTATTTGCTGAGTTTTGGATGAAGTTT 1672
|||||||||||||| || |||| | |||| ||||||||||||||||||||| |||||| |
Sbjct 1614 CTGTGAGATCTGCAATTAACGCCT-TTGGGTATGTATTTGCTGAGTTTTGGTTGAAGTCT 1672
Query 1673 AATTTTTGGCTGTAGATTAGTAGTGTATTTCTTACTCTACAGTTGAA-TCCATCCTTTTA 1731
||| ||||||| |||||||||||||| |||||||||||||| ||||| | || |||||
Sbjct 1673 AATGTTTGGCTTTAGATTAGTAGTGTGTTTCTTACTCTACAATTGAAAT--AT--TTTTA 1728
Query 1732 AGATGTTGGGGAAAAATAAA-ATAGTTAAGAATACACTATCCTTTCACCAATGCTATTAG 1790
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 1729 CGATGTTGGGGAAAAATAAAGA-AGTTAAGAATACACTATCCTTTCACCAATTTTATTAG 1787
Query 1791 TTTTAGTTTTCGTTCTGGTTCCG-TTCTTCG-TA-A-TCTTGGTTGATCTTTTTAGGAAC 1846
||||||| | ||| |||||| | ||| | | || | | | | | ||| | |||||||
Sbjct 1788 CTTTAGTTCTGGTTTTGGTTCTGGTTCCT-GATACAATGTCG-TA-ATCGTCGTAGGAAC 1844
Query 1847 TCTTATTCAGTTTGGTTGTATTGGTACTCAAACG 1880
||| ||||||||||||||||| |||||||||||
Sbjct 1845 -CTTGTTCAGTTTGGTTGTATTAGTACTCAAACG 1877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96284645310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5