BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475488
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64890.1 | Symbols: | Major facilitator superfamily protein... 2126 0.0
> AT1G64890.1 | Symbols: | Major facilitator superfamily protein
| chr1:24109542-24111400 FORWARD LENGTH=1774
Length=1774
Score = 2126 bits (1151), Expect = 0.0
Identities = 1375/1482 (93%), Gaps = 19/1482 (1%)
Strand=Plus/Plus
Query 3 CCAAAATATCTTCCAGAAATTTCCAATTTAACTCCGTACGACCCaaaaaaaaGGAAACTG 62
|||||||||||||||||||||| |||||||||||| |||| || |||| ||||||||||
Sbjct 145 CCAAAATATCTTCCAGAAATTTTGAATTTAACTCCG-ACGA-CC-AAAAGAAGGAAACTG 201
Query 63 AACAAAGACAAT--G-AGCAGCAGCGATGA-TCATGCCGGAGAATCTCGTCATCGCCGTA 118
|| ||||||||| | |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 202 AA-AAAGACAATGAGCAGCAGCAGCGAT-ACTCATGCCGGAGAATCTCGTCATCGCCGTA 259
Query 119 ACCCGATCCGGTGGCTACTCGGCTTT-GGTTTCTTCGTACAAGGATTTAGAGGTTTCCCA 177
|||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||
Sbjct 260 ACCCGATCCGGTGGCTACTCGG-TTTCGGTTTCTTCGTACAAGGATTCAGAGGATTCCCA 318
Query 178 TGGCTTGGAGCCAATTTCTTCCTCACAGATGAGCTCCGTGTAAATCCTTCAGTGCTTCAG 237
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 319 TGGCTTGGAGCCAATTTCTTCCTCACAGAACAGCTCCGTGTTAATCCTTCAGTGCTTCAG 378
Query 238 CTTCTTCAAAACTCAGCCAATCTTCCAATGGTCGCTAAACCAATCTACGGCGTCGTTTCA 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 379 CTTCTTCAAAACTCAGCCAATCTTCCAATGGTCGCTAAACCCATCTACGGCGTCGTTTCA 438
Query 298 GACTCTGTCTACTTCTTTGGCCAACATCGAATCCCTTACATCGCTATTGGAGCCTTGTTA 357
||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 439 GACTCTGTCTACTTCTTTGGCCAACATCGAATCCCATACATCGCCGTTGGAGCTTTGTTA 498
Query 358 CAAGCAATCTCATGGCTAGCAATAGCTTTCTTGTCAAGATCCAATGTGTCAATTTTAGCT 417
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 499 CAAGCAATCTCATGGCTAGCTATAGCATTCTTGTCAAGATCCAATGTATCAATCTTAGCT 558
Query 418 TTATCAATATATCTTCTTCTTAGTAATCTCGGTGCTTCCTTAGTGGAAGTAGCGAATGAT 477
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 559 TTATCGATATATCTTCTCCTTAGTAATCTCGGTGCTTCCTTAGTAGAAGTAGCGAATGAT 618
Query 478 GCTATTGTTGCTGAGGCCGGAAAGCAAAAAATCTCAGAGACGCAATCCGGTGAGCTACCT 537
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 619 GCTATTGTTGCTGAATCCGGAAAGCAAAAAACCTCAGAGACGCAATCCGGTGAGCTACCG 678
Query 538 TCGTTTGTTTGGATGGCTTCTTCTCTTGGTGGAATCTTGGGAAACCTTTTAGGTGGTATT 597
|| ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 679 TCATTTGTTTGGATGGTTTCTTCTCTTGGTGGAATCTTAGGTAACCTTTTAGGTGGTATT 738
Query 598 GCTATTAAAACGATTTCTGCTCGGTCAACGTTCCTCGTGTTTGGGATTTTGGCTCTTCTT 657
||||| |||||| |||| |||| ||||||||| || ||||||||||| ||||||||||||
Sbjct 739 GCTATCAAAACGTTTTCAGCTCAGTCAACGTTTCTTGTGTTTGGGATCTTGGCTCTTCTT 798
Query 658 CAGTTCTTGGTAACTATAAACATCCGAGAAAAGTCTCTTAATCTTCCGGAAAATCCATCA 717
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 799 CAGTTCTTGGTAACTATAAACATCAGAGAAAAGTCTCTTAATCTTCCGGAAAATCCATCA 858
Query 718 CCAGCTGGT---ATTAGAAAACATCTCTCTGACCTTTCGCATGTGTTGAGGAAGCCCGAG 774
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 859 CCAGCTGGTGGTATTAGGAAACATCTCTCTGATCTTTCGCATGTGTTGAGGAAGCCCGAG 918
Query 775 ATTTCTTTTTCCATAGCCTGGATCGCGTTATCAACCGCTGTAGTTCCTGTTCTGACTGGG 834
||||||| ||| ||||| ||||||||| ||||||||||||| ||||| ||| |||| |||
Sbjct 919 ATTTCTTATTCGATAGCTTGGATCGCGGTATCAACCGCTGTGGTTCCGGTTTTGACAGGG 978
Query 835 ACAATGTTCTTTTACCAAACAAAGTTTCTGAAAATCGATGCATCACTTCTAGGGATCTCC 894
|| ||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 979 ACTATGTTTTTTTACCAAACAAAGTTTCTGAAGATTGATGCATCACTTTTAGGGATCTCC 1038
Query 895 AAGGTGTTTGGTCAAATTGCAATGCTT-TTATGGGGTTTTGCATACAATCGTTGGCTCAA 953
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 1039 AAGGTGTTTGGTCAAATTGCAATGCTTCTT-TGGGGTTTTGCATATAATCGTTGGCTAAA 1097
Query 954 ATCTGTACAGCCGAGGAAATTGATGACAGCTATTCAGGTAACAATAGCTTTCTTTGTGAT 1013
| || | | |||||||||| || ||||||| |||||||| || |||||||||||||||||
Sbjct 1098 AGCTATGCGGCCGAGGAAACTGCTGACAGCCATTCAGGTGACGATAGCTTTCTTTGTGAT 1157
Query 1014 ATCCGATCTCTTATTTGTGAGAGGCGTTTACCGGGATTTGGGAGTGTCAGACTCTGTATA 1073
|||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1158 ATCCGATCTCTTGTTTGTGAAAGGCGTGTACCGGGATTTGGGAGTGTCGGACTCTGTATA 1217
Query 1074 CGTACTCTTCTTTTCTGGATTCTTGGAAACTCTCTTTTACTTCAAGATTCTGCCGTTCAC 1133
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1218 TGTACTCTTCTTTTCTGGATTCTTGGAAACTCTATTTTACTTCAAGATTCTGCCGTTTAC 1277
Query 1134 CGTCTTGATGGCCCGTCTCTGTCCTCCTGGATGTGAAGGGTCTCTCATGGCATTTGTCAT 1193
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TGTCTTGATGGCTCGTCTCTGTCCTCCTGGATGTGAAGGGTCTCTCATGGCATTTGTCAT 1337
Query 1194 GTCAGCCATTGCACTTGCATTCATAGTTAGCGGATATCTTGGAATCATTCTCGCATCATT 1253
|||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1338 GTCAGCCATTGCTCTTGCATTCATAGTTAGCGGATATCTTGGAATCGTTCTTGCATCGTT 1397
Query 1254 TGTCGGTGTAACAGTGGATGATTTCTCGGGGTTTACTCGTGGACTCGCTATAGAAGCGTT 1313
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1398 TGTCGGTGTAACAGAGGATGATTTCTCGGGGTTTACTCGCGGACTCGCTATAGAAGCGTG 1457
Query 1314 CTGCGTTGGGATTCCGTTGATCTTAACTTCGTGGATATATAATGAAGCGGAAACAAAGGA 1373
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1458 CTGCGTTGGGATTCCGTTGATCTTAACTTCTTGGATATATGATGAAGCGGAAACAAAAGA 1517
Query 1374 GAAAAGTAAAAAGATAGAATGAGTTCATTCGGGTTAAAGTGTACTTTGTATATCTTTGTG 1433
||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1518 GAAGAGTAAAAAGATAGAGTGAGTTCATTTGGGTTAATGTGTACTTTGTATATCTTTGTG 1577
Query 1434 ACATTCTTGTGGTTTTAAGGTTT--CGTAGTCTCTCTCTTTG 1473
||||||||||| ||| | ||||| ||||||||||||| |||
Sbjct 1578 ACATTCTTGTGATTTGA-GGTTTTTCGTAGTCTCTCTCATTG 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5