BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475500
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64970.1 | Symbols: G-TMT, TMT1, VTE4 | gamma-tocopherol met... 1842 0.0
AT1G64960.1 | Symbols: | ARM repeat superfamily protein | chr1... 115 1e-24
> AT1G64970.1 | Symbols: G-TMT, TMT1, VTE4 | gamma-tocopherol methyltransferase
| chr1:24134085-24136109 REVERSE LENGTH=1415
Length=1415
Score = 1842 bits (997), Expect = 0.0
Identities = 1218/1320 (92%), Gaps = 34/1320 (3%)
Strand=Plus/Plus
Query 20 AATAATTTCTGACTTAGTCACGTTTCTTTGTTTCTCCAAACGGCC-ATAAATGAAAGCGA 78
|||||| ||||||| ||||||||||||||| ||||| |||| || |||||||||||| |
Sbjct 68 AATAATCCCTGACTTCGTCACGTTTCTTTGTATCTCC-AACGTCCAATAAATGAAAGCAA 126
Query 79 CTCTAGCAGCACCCTCTTCTCTCACAAGCCTCCCTTTTCGAACCAACGCTTCTTTCGGCT 138
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 127 CTCTAGCAGCACCCTCTTCTCTCACAAGCCTCCCTTATCGAACCAACTCTTCTTTCGGCT 186
Query 139 C--A-CCGTCGCTTCTCTTTCGGTCTCCAT--T-AT-CT--TCAGTCTCTATGACAACAA 189
| | | |||||||||||||||||||||| | | || |||||||||||| || |
Sbjct 187 CAAAGTCATCGCTTCTCTTTCGGTCTCCATCCTCCTCCTCCTCAGTCTCTATG---ACGA 243
Query 190 CAACGGCGCGAGGGAACGTGGCTGTGGCCGCTGCTGCGACATCCACCGAGGCGCTAAGAA 249
||| |||| || |||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 244 CAA---CGCGTGGAAACGTGGCTGTGGCGGCTGCTGCTACATCCACTGAGGCGCTAAGAA 300
Query 250 AAGGAATAGCGGAATTCTACAATGAAACTTCGGGTTTGTGGGAAGATATTTGGGGAGATC 309
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 AAGGAATAGCGGAGTTCTACAATGAAACTTCGGGTTTGTGGGAAGAGATTTGGGGAGATC 360
Query 310 ACATGCATCATGGCTTTTATGACCCTGATTCTTCTGTTCAACTCTCTGATTCTGGTCACC 369
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ATATGCATCATGGCTTTTATGACCCTGATTCTTCTGTTCAACTTTCTGATTCTGGTCACA 420
Query 370 GGGAAGCTCAGATCCGAATGATTGAAGAGTCTCTCCGTTTCGCCGGTGTTACTGATGAAG 429
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 AGGAAGCTCAGATCCGTATGATTGAAGAGTCTCTCCGTTTTGCCGGTGTTACTGATGAAG 480
Query 430 AAGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGATTGGAGGAAGCTCAA 489
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGAGGAGAAAAAGATAAAGAAAGTAGTGGATGTTGGGTGTGGGATTGGAGGAAGCTCAA 540
Query 490 GGTATCTTGCTTCTAAATTTGGAGCCGAATGCATTGGCATTACTCTAAGCCCTGTTCAGG 549
| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 541 GATATCTTGCCTCTAAATTTGGAGCTGAATGCATTGGCATTACTCTCAGCCCTGTTCAGG 600
Query 550 CCAAGAGAGCCAATGACCTCGCGGCTGCTCAATCACTCTCTCATAAGG-TATCTTTTCAA 608
|||||||||||||||| ||||||||||||||||||||| ||||||||| | || || |||
Sbjct 601 CCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGGCT-TCCTTCCAA 659
Query 609 GTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAATTCGATCTGGTGTGGTCGATG 668
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 GTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAATTCGATCTAGTGTGGTCGATG 719
Query 669 GAGAGTGGTGAGCATATGCCTGACAAGGCCAAGTTCGTGAAAGAGTTGGTACGTGTGGCG 728
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 720 GAGAGTGGTGAGCATATGCCTGACAAGGCCAAGTTTGTAAAAGAGTTGGTACGTGTGGCG 779
Query 729 GCTCCAGGAGGAAGGATAATAATAGTGACATGGTGCCACAGAAACCTATCCACCGGGGAG 788
||||||||||| |||||||||||||||||||||||||| ||||| ||||| | ||||||
Sbjct 780 GCTCCAGGAGGTAGGATAATAATAGTGACATGGTGCCATAGAAATCTATCTGCGGGGGAG 839
Query 789 AAAGCTTTGCAGCCATGGGAGCAAAACATCTTGGACAAAATCTGTAAGACATTCTATCTC 848
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 840 GAAGCTTTGCAGCCGTGGGAGCAAAACATCTTGGACAAAATCTGTAAGACGTTCTATCTC 899
Query 849 CCGGCGTGGTGCTCCACCGATGATTATGTCAAATTGCTGCAATCCCATTCTCTCCAGGAT 908
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 900 CCGGCTTGGTGCTCCACCGATGATTATGTCAACTTGCTTCAATCCCATTCTCTCCAGGAT 959
Query 909 ATTAAGTGTGCGGATTGGTCAGAGAACGTAGCTCCTTTCTGGCCTGCCGTTATACGGACT 968
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 960 ATTAAGTGTGCGGATTGGTCAGAGAACGTAGCTCCTTTCTGGCCTGCGGTTATACGGACT 1019
Query 969 GCACTAACATGGAATGGCCTTGTGTCTCTGCTTCGTAGTGGTATGAAGAGTATAAAAGGA 1028
||| |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1020 GCATTAACATGGAAGGGCCTTGTGTCTCTGCTTCGTAGTGGTATGAAAAGTATTAAAGGA 1079
Query 1029 GCGTTGACAATGCCATTGATGATCGAAGGTTACAAGAAAGGTGTCATTAAGTTTGGCATC 1088
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1080 GCATTGACAATGCCATTGATGATTGAAGGTTACAAGAAAGGTGTCATTAAGTTTGGTATC 1139
Query 1089 ATCACTTGCCAGAAGCCCCTCTAAGTCTAAAGCTATACTAGGAGATTGAATAAGA----- 1143
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATCACTTGCCAGAAGCCACTCTAAGTCTAAAGCTATACTAGGAGATTGAATAAGACTATA 1199
Query 1144 -G--T-----CTCATGTGAATGCATGAGATTCCTTAAAAACGTCAATGTTAAGCCTATGC 1195
| | |||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 AGAGTAGTGTCTCATGTGAAAGCATGAAATTCCTTAAAAACGTCAATGTTAAGCCTATGC 1259
Query 1196 TTCGTTATTTGTTTTAGCTAAGTATAATTTCACTCTTGTCTAAGGTAGTTTCT-TAAAAC 1254
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||| |
Sbjct 1260 TTCGTTATTTGTTTTAGATAAATATCATTTCACTCTTGTCTAAGGTAGTTTCTATAAA-C 1318
Query 1255 AATAAATACCATGAATTAGCTCATATTATCTGGTAAATTCTCAAAAGTGATTGTCACGGA 1314
|||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||
Sbjct 1319 AATAAATACCATGAATTAGCTCATGTTATCTGGTAAACTCTCGGAAGTGATTGTCATGGA 1378
> AT1G64960.1 | Symbols: | ARM repeat superfamily protein | chr1:24129918-24134204
FORWARD LENGTH=3767
Length=3767
Score = 115 bits (62), Expect = 1e-24
Identities = 77/84 (92%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 1232 TGTCTAAGGTAGTTTCTTA-AAACAATAAATACCATGAATTAGCTCATATTATCTGGTAA 1290
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 3767 TGTCTAAGGTAGTTTC-TATAAACAATAAATACCATGAATTAGCTCATGTTATCTGGTAA 3709
Query 1291 ATTCTCAAAAGTGATTGTCACGGA 1314
| |||| |||||||||||| |||
Sbjct 3708 ACTCTCGGAAGTGATTGTCATGGA 3685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5