BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475501
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64980.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 1749 0.0
> AT1G64980.1 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr1:24137517-24139276 REVERSE LENGTH=1235
Length=1235
Score = 1749 bits (947), Expect = 0.0
Identities = 1133/1218 (93%), Gaps = 31/1218 (3%)
Strand=Plus/Plus
Query 1 TCTCTTTCTCCTTTTTTCCACATTTTAGTCCACAAATCTCCATTTCTGTCGGTGCTCCAA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 TCTCTTTCTCCTTTGTTCCACATTTTAGTCCACAAATCTCCATTTCTGTCGGTGCTCCAA 73
Query 61 GCTTTTTGTCAAGATCCAAGCTCTCATCATTTCCTCCAGATCCGAATTCTGCAACAACAA 120
||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct 74 GCTTTTTCTCAAGATCCAAGTTCTCATCATCTCCTCCAGATTCGAATTCTGCAACAACAA 133
Query 121 TGACAATTAGCAACGGCGATGTCAAATCTGATACCTGCAACAATGGTTCTTCTGAGAAGA 180
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 134 TGACAATTAGCAACGGAGATGTCAAATCTGAAACCTGCAACAATGGCTCTTCTGAGAAGA 193
Query 181 AACCTTTCAGGATCTTTGTTGGTTACGATCCACGCGAAGATCTTGCTTACCAAGTCTGTC 240
|||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 194 AACCATTCAGGATCTTCGTTGGTTACGATCCACGAGAAGATCTTGCCTACCAAGTTTGTC 253
Query 241 GTCATTCAATCACCAAAAGATCTTCAATCCCTGTAGAGATCATACCGATTGTTCAATCAG 300
|||||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 254 ATCATTCAATCACAAAAAGATCTTCAATCCCTGTAGAGATCACACCAATTATTCAATCAG 313
Query 301 ATCTTCGAAAGAAAGGTTTGTATTGGAGAGAAAGAGGTCAGTTAGAGAGCACTGAGTTCT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 ATCTTCGAAAGAAAGGTCTGTATTGGAGAGAAAGAGGTCAGTTAGAGAGCACTGAGTTCT 373
Query 361 CTTTCTCTCGTTTCTTGACTCCTCATTTGTCCGATTACCAAGGTTGGGCTATGTTTGTCG 420
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 374 CTTTCTCTCGTTTCTTGACTCCTCACTTGTCAGATTACCAAGGTTGGGCTATGTTCGTCG 433
Query 421 ATTGCGATTTCCTCTACCTTGCTGATATCAAGGAACTTACTGATTTGATCGATGATAAAT 480
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 434 ACTGTGATTTCCTCTACCTTGCTGATATCAAGGAACTCACTGATTTGATCGATGATAAAT 493
Query 481 ACGCGATCATGTGTGTTCAACATGATTATACTCCTAAGGAGACTACTAAGATGGATGGTG 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ATGCGATCATGTGTGTTCAACATGATTATACTCCTAAGGAGACTACTAAGATGGATGGTG 553
Query 541 CGGTTCAAACCGTGTACCCAAGGAAGAACTGGTCTTCAATGGTGCTTTACAATTGTGGAC 600
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 554 CGGTTCAAACTGTGTACCCGAGGAAGAACTGGTCTTCAATGGTGCTTTACAACTGTGGAC 613
Query 601 ATCCTAAGAACAAGACCTTGAGCCCTGAGATTGTTAATACTCAGACTGGTGCGTTTCTTC 660
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 614 ACCCTAAGAACAAGACTTTGAGCCCTGAGATTGTTAATACTCAGACTGGTGCGTTTCTCC 673
Query 661 ATAGGTTCCAGTGGCTTGAGGACGAAGAGATTGGGTCTATTCCCTTTGTGTGGAATTTTC 720
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 674 ATAGGTTCCAGTGGCTTGAGGATGAAGAGATTGGGTCTATTCCTTTTGTGTGGAACTTTC 733
Query 721 TTGAAGGGCACAATAGGGTTGTTGAGAAGGATCCCACCACGCAGCCTAAGGCGGTGCATT 780
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 734 TTGAAGGGCACAATAGGGTTGTTGAGAAAGATCCCACCACGCAGCCTAAAGCGGTGCATT 793
Query 781 ATACTCGTGGAGGGCCTTGGTTTGATGCTTGGAAGGATTGCGAGTTTGCGGATCTCTGGC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 794 ATACTCGTGGAGGGCCTTGGTTTGATGCTTGGAAGGATTGCGAGTTTGCGGATCTTTGGC 853
Query 841 TTAATGAGATGgaagagtacaacaaagagagcaagaaagaagccgataatgcgaagaagt 900
|||||||||||||||||||||||||||||| |||||| ||||| ||||| || || | ||
Sbjct 854 TTAATGAGATGGAAGAGTACAACAAAGAGAACAAGAAGGAAGCTGATAACGC-AA-A-GT 910
Query 901 agaaagaaagaagtaagaGGTATGTTGTTACTTACCAACACGAGTAGTGCACTTCCGTTA 960
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 911 AGAAAGAAAGAAGTAAGAGGTATGTTGTTACTTACCAACACGAGTAGTGAACTTCCTTTA 970
Query 961 CATAGTTTTGGCTTTGTAGAGCCACGGAACATTAGTCTTGTGGAGGGCTATGAAGTTTT- 1019
|||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 971 CATAGTGTTGGCTTTGTAGAGCCAGGGATCATTAGTCTTGTGGAGGGCTATGGAGTTTTT 1030
Query 1020 ---A-TTTCATTGAATTCGTTAAATCATTTGCAA-CACTA--A-TACCAATATTAAGGTC 1071
| |||||||||||||||||||||||| |||| ||||| | |||| ||||| |||||
Sbjct 1031 TTTAATTTCATTGAATTCGTTAAATCATTCGCAAACACTATTAGTACCTATATTGAGGTC 1090
Query 1072 ATATGGTATAATAACCCTATT--T--GTTT----GTT-T-TTT---A------ATGGTAT 1112
||||||||||||||||||||| | |||| ||| | ||| | |||||||
Sbjct 1091 ATATGGTATAATAACCCTATTCGTTTGTTTATTTGTTGTGTTTTGTACCTTTGATGGTAT 1150
Query 1113 TTTATTTGTATAATTGATATGTGACTTTATGTAGCACTTCTTTTTAATTGATCTATAATG 1172
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1151 TTTATTTGTATAATTGATATGTGAATTTATGTAGCATTTCTTTTTAATTGATCTATAATG 1210
Query 1173 AGCACTAGCTCAACATAT 1190
|||| |||||||||||||
Sbjct 1211 AGCAGTAGCTCAACATAT 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58433434380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5