BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475506
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65020.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1788 0.0
> AT1G65020.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits
to 69 proteins in 27 species: Archae - 0; Bacteria - 18;
Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes
- 7 (source: NCBI BLink). | chr1:24154344-24156605 REVERSE
LENGTH=1233
Length=1233
Score = 1788 bits (968), Expect = 0.0
Identities = 1046/1084 (96%), Gaps = 3/1084 (0%)
Strand=Plus/Plus
Query 1 GGGG-tttttcttttttCTTAATTTCCAAGAATCGTCTCTTCTCTCT-ATTTCTCCAATT 58
|||| |||||||||||||||||||||||||||||||||||| ||||| | | ||||||||
Sbjct 4 GGGGTTTTTTCTTTTTTCTTAATTTCCAAGAATCGTCTCTTTTCTCTCAATCCTCCAATT 63
Query 59 CCCAAATATCAACAAGAAGAAGCAGC-AACGATGTGGATTGAGATCATCTGCGGTCTCGT 117
||||||| ||||||| |||| | ||| ||||||||||||||| |||||||||||||||||
Sbjct 64 CCCAAATTTCAACAACAAGACGAAGCAAACGATGTGGATTGAAATCATCTGCGGTCTCGT 123
Query 118 CATCTACAAACTCGTCCGCCGTTTCTTCTACGACGACGAATTCTCCGACGTCGAGACTTC 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 124 CATCTACAAACTCGTCCGCCGTTTCTTCTACGACGACGAATTCTCCGACGTCGAAACTTC 183
Query 178 CGATTCCACTGCTCTCTTCTCCGTTGCTCACAGACTTGAGAAACTTTACGGTGGAAAAGC 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 184 CGATTCCACTGCTCTCTTCTCCGTTGCTCACAGACTTGAGAAACTTTATGGTGGAAAAGC 243
Query 238 TTATGTAGGACTTCGAATTCCAGATGCCGACACTGCTTCTAGACAGGACATTGATGTTGT 297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 244 TTATGTAGGACTTCGAATTCCAGATGCCGACACTGCTTCTAGACAAGACATTGATGTTGT 303
Query 298 TCTTGTTACTAAAGGAGAAATTGTAGTGATTTCTGTGAAGAATCTATCGGGGATTGTTAC 357
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCTTGTTACTAAAGGAGATGTTGTAGTGATTTCTGTGAAGAATCTATCGGGGATTGTTAC 363
Query 358 GGTAACTAGTGATGGTAGCTGGGTTTGTGAAGGTGGCAAGCATCATACCACTGAGTCTTT 417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 364 GGTAACTAGTGATGGTAGCTGGGTTTGTGAAGGTGGCAAGCATCATACTACTGAGACTTT 423
Query 418 CCCTGATCCTCTGGCCGAGGTCAAGAAACAAGCTTCAGTTCTTGAATCATATCTTGAACA 477
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CCCTGATCCTCTGGCGGAGGTCAAGAAACAAGCTTCAGTTCTTGAATCATATCTTGAACA 483
Query 478 GAGGGGAGTTACTTTACTAGAAGGAAATCTGTCTTGCAAAGTTGTCATTCCCAATCCAAG 537
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 484 GAGGGGAGTTACTTTACTAGAAGGAAATGTGTCTTGCAAAGTTGTCATTCCCAATCCAAG 543
Query 538 TTTTCGTACAATTCATGCATTCCCTAGTGAGGTAATTACCTATGAAGATTGGCAACAGCT 597
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 544 TTTTCGTACAATTCATGCATTCCCGAGTGAGGTAATTACCTATGAAGATTGGCAACAGCT 603
Query 598 GAAACCAGCATCAAGAAGTAAATTTTCTGGTTGGGTTAAAGGCGCATTCAGCACAGGAAA 657
||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 604 AAAACCAGTATCAAAAAGTAAAATTTCTGGTTGGGTTAAAGGCGCATTCAGCACCGGAAA 663
Query 658 AGAGATGCAGGAATCATCGCATCAAAAACTTAATTTCATCCTTGGCACAGCACCAACGTG 717
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGAGATGCAGGAATCTTCGCATCAAAAACTTAATTTCATCCTTGGCACAGCACCAACGTG 723
Query 718 GGATAGAGTGGAGCTTAGAAGTAGCAAAATTGTGTTAGGGGAATTCCTTGAGTTTAAAGG 777
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 724 GGATAGAGTGGAGCTTAAAAGTAGCAAAATTGTGTTAGGGGAATTCCTCGAGTTTAAAGG 783
Query 778 AAAGCAGGAAGATACCCTGGCTTTAAGAAATATCAAAAGATCAAAAGTCGATCGTGTCTC 837
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 784 AAAGCAGGAAGATACCCTGGCTTTAAGAAATATCAAAAGGTCAAAAGTCGACCGTGTCTC 843
Query 838 TATTCAGAAAACAAGCATGTTTGGATTAGCTCCTTCGAGGTTGCAGGTTCTGTATTCGTA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TATTCAGAAAACAAGCATGTTTGGATTAGCTCCTTCGAGGTTGCAGGTTCTGTATTCGTA 903
Query 898 TAGGGACTACAGAAGTGAAGGCAGTTCAGGGGCAGAGTCGAAAGAAGTGACCGTCCGGTC 957
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 904 TAGGGACTACAGAAGTGAAGGCAGTTCAGGGGCAGAGTCGAAAGAAGTGACTGTCAGGTC 963
Query 958 AAGCACTGAGGTTTTGTTTCAGCCACGAGACTCCACAAAGATGAAGAAATTCAAGCTATC 1017
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GAGCACTGAGGTTCTGTTTCAGCCACGAGACTCCACAAAGATGAAGAAATTCAAGCTATC 1023
Query 1018 GTCGCTCGTCTCCATTTCACTAAGTGCCTAACTGTGAAGTGAGCTTATTAGTATGCAGCA 1077
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1024 GTCGCTTGTCTCCATTTCACTAAGTGCCTAACTATGAAGTGAGCTTATTAGCATGCAGCA 1083
Query 1078 GAGG 1081
||||
Sbjct 1084 GAGG 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5