BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475515
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65080.1 | Symbols: | Membrane insertion protein, OxaA/YidC... 2414 0.0
> AT1G65080.1 | Symbols: | Membrane insertion protein, OxaA/YidC
with tetratricopeptide repeat domain | chr1:24176582-24180871
FORWARD LENGTH=1757
Length=1757
Score = 2414 bits (1307), Expect = 0.0
Identities = 1578/1705 (93%), Gaps = 33/1705 (2%)
Strand=Plus/Plus
Query 1 AATGGCAGTGTGGAGGACTTGTTTACGCGcctcctcctcctcctcctctcg-tcaccgtt 59
||||||||||||||||| |||||||||||||||||||| ||| | | | || | | | ||
Sbjct 37 AATGGCAGTGTGGAGGAGTTGTTTACGCGCCTCCTCCT-CTCGT-CAC-CGTTTATC-TT 92
Query 60 -tctctac-tctctttcc-cct------cttctcctccatctccaatcctcctcctctct 110
||||| | |||| || ||| || ||||| ||||||| || ||||||||||||
Sbjct 93 CTCTCTTCTTCTCCCACCACCTCAAACCCTCCTCCTTCATCTCCCATTCTCCTCCTCTCT 152
Query 111 tctctccctcGCCGTCACCATCGCCGCCGTGTTTCCCCCCTCTCCGCCGATTCA-TCTCT 169
|||||||||||||||||||||| ||| |||||||| | ||||||| |||||| | |||||
Sbjct 153 TCTCTCCCTCGCCGTCACCATCTCCGACGTGTTTCTCTCCTCTCCACCGATT-ACTCTCT 211
Query 170 TCTTCCCCAGAATTCCCAATCATTTCTCAAGAAATCATAATCCCTAACGATGACTCTTCT 229
||| |||||||||||||| |||||||||||| ||||||| |||||| ||||||
Sbjct 212 TCTGGACCAGAATTCCCAATTGGGTCTCAAGAAATC---ATCCCTACCGATGATTCTTCT 268
Query 230 TTACCTGTTCTCTTCGTCGTTGATTTTCTCGACGGGTTTCATGAATTCACAGGATTGCCT 289
|||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 269 TTACCTGTTCTCGCCGTCGTTGATTTCCTCGAAGGCTTTCATGAATTCACAGGATTGCCT 328
Query 290 TGGTGGATGATTATTGCATCTTCTACTGTTGCTGTTAGATTAGCTTTATTGCCTTTACTC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TGGTGGATGATTATTGCATCTTCTACTGTTGCTGTTAGATTAGCTTTATTGCCTTTACTC 388
Query 350 ATACTTCAACTCAAGAAATTGAAGACCATTTCTGAGTTGTTACCTCAGTTGCCTATGCCG 409
|||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||||
Sbjct 389 ATACTTCAACTCAAGAAATTGAAGACCATTTCAGAGCTGCTACCGAAGTTGCCTATGCCG 448
Query 410 ATCCCAGAGACTCCTACGTTGAAAGGATCTATTGACCAATTTTCTCATTTTCTTAAAGAG 469
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 449 ATCCCAGAGACTCCAACGTTGAAAGGATCTATTGACCAGTTTTCTCATTTTCTTAAAGAG 508
Query 470 AGTCGAGCTATTGGGTGTCCCTCCTTTTTGTGGTTCTTCCCATACTTATCGGTCCAGCTC 529
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 509 AGTCGAGCAATTGGGTGCCCCTCCTTTTTGTGGTTCTTCCCATACTTATCTGTCCAGCTC 568
Query 530 CCATGCTTTTTCTTGTTGATGGCTAGCATCCGGAAGATGTCACTAGATGGTCACCCTGGC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CCATGCTTTTTCTTGTTGATGGCTAGCATCCGGAAGATGTCACTAGATGGTCACCCTGGC 628
Query 590 TTTGATTCTGGTGGTGCCTTATGGTTCCAGAATTTGAGTGATCTTCCTGTTGGCTCTTTT 649
|||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 629 TTTGATTCTGGTGGTGTCTTATGGTTCCAGAACTTGAGTGATCTTCCTGGTGGCTCTTTT 688
Query 650 GGACCAGTCTTTCCAATTTTAATTGCTGCCTTCCATTACATTAATATACAGATTTCTTTT 709
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 689 GGACCAGTCTTCCCAATTTTAATTGCTACCTTCCATTACATTAATATACAGATTTCTTTT 748
Query 710 GATACATCCACAATTCGTCAAACTACCGGCTTGACCGGGCTGCTCATGAGATATTACAAG 769
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 749 GATACATCCACAATTCGTCAAACTACCGGCTTGACTGGGCTGCTCATGAGATATTACAAG 808
Query 770 TTATATCTGGAGATCTTAAGTGTTCCTCTGTTTTTTGTTGGCTATGCTATTCCACAGGGA 829
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 809 TTATATCTGGAGATCTTAAGCGTTCCTCTGTTTTTTGTTGGCTATGCTATTCCACAGGGA 868
Query 830 AGTCTTGTCTATTGGGTAACCAACAGCTCAGTTAATATATTTCAGCAATTATCTCTCAAG 889
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 869 AGTCTTGTCTACTGGGTAACCAACAGCTCAGTAAATATCTTTCAGCAATTATCTCTCAAG 928
Query 890 CATCCTACGGTAGGAGCAAAACTTGGTTTACTGAGTCAAGGGGCCTCTCCAAGCGTTGAA 949
|| ||||| ||||||||||||||||||||||||||||| |||||| ||||| || | | |
Sbjct 929 CACCCTACTGTAGGAGCAAAACTTGGTTTACTGAGTCAGGGGGCCACTCCAGGCATGGGA 988
Query 950 CATTCCATGGAGATCAGTGAATCCGTGATCAAGTATGTGGATTCTGACTTAAAAGAGCAT 1009
||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| ||
Sbjct 989 CATTCCATGGAGATCAGCGAATCTGTGATCAAGTATGTGGACTCTGACTCAAAAGAACAG 1048
Query 1010 ACCCTTTCTCTACAGACTTTAACACCAGAAGAACTTCTTTCTCTCTCAGTTCAGGTCTTG 1069
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1049 ACCCTTTCTCTACAGACTCTAACACCAGAAGAACTTCTTTCTCTTTCAGTTCAGGTCTTG 1108
Query 1070 GCAAAAGATGATAAAGAAACATCCATTCAGTTGCTTCGGTTAGCTCTTGAAAAGGATCCT 1129
| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1109 TCCAAAGGTGATAAAGAAACATCCATTCAGTTGCTTCGATTAGCTCTTGAAAAGGATCCT 1168
Query 1130 GGATATGTAAGAGGTTTGGTTCTCATGGGGCAGGCTTTGTTGCAGAAGACAG-AGTTGTC 1188
||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||
Sbjct 1169 GGATATGTAAGAGGTTTGGTTCTCATGGGGCAGGCGTTGTTACAGAAGAC-GCAGTTGTC 1227
Query 1189 AGAAGCTACTAAATATTTAGAGCTTGCTATCTCCAAGCTTCTTGATGAGGATCCATCTGA 1248
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1228 AGAAGCTACTGAATATTTAGAGCTTGCTATCTCCAAGCTCCTTGATGAGGATCCATCTGA 1287
Query 1249 TGCTGAGGATGTTGAACTTTTAATGCTTGCGTCTCAGTGGGCTGGTGCTGCATACGTACA 1308
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1288 TGCTGAGGATGTTGAACTTTTAATGCTTGCATCTCAGTGGGCTGGTGCTGCATACGTACA 1347
Query 1309 ACAGGGAAAAATGAAAAGCGGAATCACACACTTGGAAAGAGTAGCAAAACTGAAAGAACC 1368
|||||||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 1348 ACAGGGAAAACTGAAAAGCGGAATCATACACTTGGAAAGAGTAGCGAAACTGAGAGAACC 1407
Query 1369 CGGTGATCCGAAAAGCAAAGAGCATTACTTTGAGGCATTGCTGCTTCTTTCAAGTGCTTT 1428
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1408 TGGTGATCCTAAAAGCAAAGAGCATTACTTTGAGGCATTGCTGCTTCTTTCAAGCGCTTT 1467
Query 1429 GTACAAAGAAGGGCAGAGTGATGAAGCCGCAAAGATTTTACGAGTAGTAGTGGATCACAA 1488
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1468 GTACAAAGAAGGGCAGAGTGATGAAGCTGCAAAGATTTTACGAGTAGTAGTGGATCACAA 1527
Query 1489 TCCGGCGTACAAGCCTCTGCTGGAACAGTGTGAAGATGAGAATGAGCTGGTTAGCGATCT 1548
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1528 TCCGGCGTACAAGCCTCTGCTGGAACAGTGTGAAGATGAGAATGAGCTAGTTAGCGATCT 1587
Query 1549 TGTCAGTCGCAGGAAGGATCATTTCTGATTTTCTCCAC-----CA-------TTGTAAGT 1596
|||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1588 TGTCAGTCGCAGAAAGGATCATTTCTGATTTTCTCCACGTGTGCAAACCGCATTGTAAGT 1647
Query 1597 ATCTGAATACAACGAGAGCGTTCATCTTTCAAAAGTTCATAACCTTGTAGGTTAGTAATA 1656
|| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1648 ATTTGAATACTACGAGAGCGTTCAACTTTCAATAGTTCATAACCTTGTAGGTTAGTAATA 1707
Query 1657 GTGTAAATGTATAATCCAATTGATG 1681
||||||||| |||||| |||||||
Sbjct 1708 CTGTAAATGTGTAATCCCATTGATG 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83081901975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5