BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475515 Length=1681 Score E Sequences producing significant alignments: (Bits) Value AT1G65080.1 | Symbols: | Membrane insertion protein, OxaA/YidC... 2414 0.0 > AT1G65080.1 | Symbols: | Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain | chr1:24176582-24180871 FORWARD LENGTH=1757 Length=1757 Score = 2414 bits (1307), Expect = 0.0 Identities = 1578/1705 (93%), Gaps = 33/1705 (2%) Strand=Plus/Plus Query 1 AATGGCAGTGTGGAGGACTTGTTTACGCGcctcctcctcctcctcctctcg-tcaccgtt 59 ||||||||||||||||| |||||||||||||||||||| ||| | | | || | | | || Sbjct 37 AATGGCAGTGTGGAGGAGTTGTTTACGCGCCTCCTCCT-CTCGT-CAC-CGTTTATC-TT 92 Query 60 -tctctac-tctctttcc-cct------cttctcctccatctccaatcctcctcctctct 110 ||||| | |||| || ||| || ||||| ||||||| || |||||||||||| Sbjct 93 CTCTCTTCTTCTCCCACCACCTCAAACCCTCCTCCTTCATCTCCCATTCTCCTCCTCTCT 152 Query 111 tctctccctcGCCGTCACCATCGCCGCCGTGTTTCCCCCCTCTCCGCCGATTCA-TCTCT 169 |||||||||||||||||||||| ||| |||||||| | ||||||| |||||| | ||||| Sbjct 153 TCTCTCCCTCGCCGTCACCATCTCCGACGTGTTTCTCTCCTCTCCACCGATT-ACTCTCT 211 Query 170 TCTTCCCCAGAATTCCCAATCATTTCTCAAGAAATCATAATCCCTAACGATGACTCTTCT 229 ||| |||||||||||||| |||||||||||| ||||||| |||||| |||||| Sbjct 212 TCTGGACCAGAATTCCCAATTGGGTCTCAAGAAATC---ATCCCTACCGATGATTCTTCT 268 Query 230 TTACCTGTTCTCTTCGTCGTTGATTTTCTCGACGGGTTTCATGAATTCACAGGATTGCCT 289 |||||||||||| |||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 269 TTACCTGTTCTCGCCGTCGTTGATTTCCTCGAAGGCTTTCATGAATTCACAGGATTGCCT 328 Query 290 TGGTGGATGATTATTGCATCTTCTACTGTTGCTGTTAGATTAGCTTTATTGCCTTTACTC 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 TGGTGGATGATTATTGCATCTTCTACTGTTGCTGTTAGATTAGCTTTATTGCCTTTACTC 388 Query 350 ATACTTCAACTCAAGAAATTGAAGACCATTTCTGAGTTGTTACCTCAGTTGCCTATGCCG 409 |||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||| Sbjct 389 ATACTTCAACTCAAGAAATTGAAGACCATTTCAGAGCTGCTACCGAAGTTGCCTATGCCG 448 Query 410 ATCCCAGAGACTCCTACGTTGAAAGGATCTATTGACCAATTTTCTCATTTTCTTAAAGAG 469 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 449 ATCCCAGAGACTCCAACGTTGAAAGGATCTATTGACCAGTTTTCTCATTTTCTTAAAGAG 508 Query 470 AGTCGAGCTATTGGGTGTCCCTCCTTTTTGTGGTTCTTCCCATACTTATCGGTCCAGCTC 529 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 509 AGTCGAGCAATTGGGTGCCCCTCCTTTTTGTGGTTCTTCCCATACTTATCTGTCCAGCTC 568 Query 530 CCATGCTTTTTCTTGTTGATGGCTAGCATCCGGAAGATGTCACTAGATGGTCACCCTGGC 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 CCATGCTTTTTCTTGTTGATGGCTAGCATCCGGAAGATGTCACTAGATGGTCACCCTGGC 628 Query 590 TTTGATTCTGGTGGTGCCTTATGGTTCCAGAATTTGAGTGATCTTCCTGTTGGCTCTTTT 649 |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| Sbjct 629 TTTGATTCTGGTGGTGTCTTATGGTTCCAGAACTTGAGTGATCTTCCTGGTGGCTCTTTT 688 Query 650 GGACCAGTCTTTCCAATTTTAATTGCTGCCTTCCATTACATTAATATACAGATTTCTTTT 709 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 689 GGACCAGTCTTCCCAATTTTAATTGCTACCTTCCATTACATTAATATACAGATTTCTTTT 748 Query 710 GATACATCCACAATTCGTCAAACTACCGGCTTGACCGGGCTGCTCATGAGATATTACAAG 769 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 749 GATACATCCACAATTCGTCAAACTACCGGCTTGACTGGGCTGCTCATGAGATATTACAAG 808 Query 770 TTATATCTGGAGATCTTAAGTGTTCCTCTGTTTTTTGTTGGCTATGCTATTCCACAGGGA 829 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 809 TTATATCTGGAGATCTTAAGCGTTCCTCTGTTTTTTGTTGGCTATGCTATTCCACAGGGA 868 Query 830 AGTCTTGTCTATTGGGTAACCAACAGCTCAGTTAATATATTTCAGCAATTATCTCTCAAG 889 ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 869 AGTCTTGTCTACTGGGTAACCAACAGCTCAGTAAATATCTTTCAGCAATTATCTCTCAAG 928 Query 890 CATCCTACGGTAGGAGCAAAACTTGGTTTACTGAGTCAAGGGGCCTCTCCAAGCGTTGAA 949 || ||||| ||||||||||||||||||||||||||||| |||||| ||||| || | | | Sbjct 929 CACCCTACTGTAGGAGCAAAACTTGGTTTACTGAGTCAGGGGGCCACTCCAGGCATGGGA 988 Query 950 CATTCCATGGAGATCAGTGAATCCGTGATCAAGTATGTGGATTCTGACTTAAAAGAGCAT 1009 ||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| || Sbjct 989 CATTCCATGGAGATCAGCGAATCTGTGATCAAGTATGTGGACTCTGACTCAAAAGAACAG 1048 Query 1010 ACCCTTTCTCTACAGACTTTAACACCAGAAGAACTTCTTTCTCTCTCAGTTCAGGTCTTG 1069 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1049 ACCCTTTCTCTACAGACTCTAACACCAGAAGAACTTCTTTCTCTTTCAGTTCAGGTCTTG 1108 Query 1070 GCAAAAGATGATAAAGAAACATCCATTCAGTTGCTTCGGTTAGCTCTTGAAAAGGATCCT 1129 | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1109 TCCAAAGGTGATAAAGAAACATCCATTCAGTTGCTTCGATTAGCTCTTGAAAAGGATCCT 1168 Query 1130 GGATATGTAAGAGGTTTGGTTCTCATGGGGCAGGCTTTGTTGCAGAAGACAG-AGTTGTC 1188 ||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||| Sbjct 1169 GGATATGTAAGAGGTTTGGTTCTCATGGGGCAGGCGTTGTTACAGAAGAC-GCAGTTGTC 1227 Query 1189 AGAAGCTACTAAATATTTAGAGCTTGCTATCTCCAAGCTTCTTGATGAGGATCCATCTGA 1248 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1228 AGAAGCTACTGAATATTTAGAGCTTGCTATCTCCAAGCTCCTTGATGAGGATCCATCTGA 1287 Query 1249 TGCTGAGGATGTTGAACTTTTAATGCTTGCGTCTCAGTGGGCTGGTGCTGCATACGTACA 1308 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1288 TGCTGAGGATGTTGAACTTTTAATGCTTGCATCTCAGTGGGCTGGTGCTGCATACGTACA 1347 Query 1309 ACAGGGAAAAATGAAAAGCGGAATCACACACTTGGAAAGAGTAGCAAAACTGAAAGAACC 1368 |||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||||| Sbjct 1348 ACAGGGAAAACTGAAAAGCGGAATCATACACTTGGAAAGAGTAGCGAAACTGAGAGAACC 1407 Query 1369 CGGTGATCCGAAAAGCAAAGAGCATTACTTTGAGGCATTGCTGCTTCTTTCAAGTGCTTT 1428 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1408 TGGTGATCCTAAAAGCAAAGAGCATTACTTTGAGGCATTGCTGCTTCTTTCAAGCGCTTT 1467 Query 1429 GTACAAAGAAGGGCAGAGTGATGAAGCCGCAAAGATTTTACGAGTAGTAGTGGATCACAA 1488 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1468 GTACAAAGAAGGGCAGAGTGATGAAGCTGCAAAGATTTTACGAGTAGTAGTGGATCACAA 1527 Query 1489 TCCGGCGTACAAGCCTCTGCTGGAACAGTGTGAAGATGAGAATGAGCTGGTTAGCGATCT 1548 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1528 TCCGGCGTACAAGCCTCTGCTGGAACAGTGTGAAGATGAGAATGAGCTAGTTAGCGATCT 1587 Query 1549 TGTCAGTCGCAGGAAGGATCATTTCTGATTTTCTCCAC-----CA-------TTGTAAGT 1596 |||||||||||| ||||||||||||||||||||||||| || |||||||| Sbjct 1588 TGTCAGTCGCAGAAAGGATCATTTCTGATTTTCTCCACGTGTGCAAACCGCATTGTAAGT 1647 Query 1597 ATCTGAATACAACGAGAGCGTTCATCTTTCAAAAGTTCATAACCTTGTAGGTTAGTAATA 1656 || ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1648 ATTTGAATACTACGAGAGCGTTCAACTTTCAATAGTTCATAACCTTGTAGGTTAGTAATA 1707 Query 1657 GTGTAAATGTATAATCCAATTGATG 1681 ||||||||| |||||| ||||||| Sbjct 1708 CTGTAAATGTGTAATCCCATTGATG 1732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83081901975 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5