BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475524
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47450.1 | Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 | tonoplast... 1020 0.0
> AT5G47450.1 | Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 | tonoplast
intrinsic protein 2;3 | chr5:19248249-19249504 REVERSE LENGTH=1051
Length=1051
Score = 1020 bits (552), Expect = 0.0
Identities = 678/736 (92%), Gaps = 20/736 (3%)
Strand=Plus/Plus
Query 578 TGACTCTTGGCCTTGCCATCGGCGGAAACATAACACTCATCACAGGTTTCTTCTACTGGA 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 295 TGACTCTTGGCCTTGCCATCGGCGGAAACATAACACTCATCACAGGTTTCTTCTATTGGA 354
Query 638 TTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACCAATGGAA 697
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 355 TTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACTAATGGCA 414
Query 698 AGAGCGTACCGACCCACGGAGTCGCAGCCGGTTTAGGAGCGGTCGAAGGTATCGTGATGG 757
||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||| ||||
Sbjct 415 AGAGCGTACCGACCCACGGGGTCTCAGCCGGTCTAGGAGCGGTCGAAGGTGTCGTCATGG 474
Query 758 AGATCATTGTCACCTTTGCTTTGGTCTACACCGTCTACGCCACAGCAGCTGATCCAAAGA 817
||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 475 AGATCGTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACAGCAGCTGATCCAAAGA 534
Query 818 AAGGATCGCTTGGGACCATCGCTCCAATCGCTATCGGCTTCATAGTTGGTGCCAACATCC 877
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 535 AAGGATCGCTAGGGACCATCGCTCCAATCGCCATCGGCTTCATAGTTGGTGCCAACATCC 594
Query 878 TCGCTGCTGGTCCATTCAGTGGTGGCTCCATGAACCCAGCAAGGTCTTTCGGACCAGCTG 937
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 595 TCGCTGCTGGTCCATTCAGTGGTGGCTCCATGAATCCAGCAAGGTCGTTCGGACCAGCTG 654
Query 938 TTGTGAGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGAACCACTTGTGGGTGGTG 997
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 655 TTGTCAGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGGACCACTTGTGGGTGGTG 714
Query 998 CACTCGCCGGACTTATCTACGGTGACGTGTTCATCGGTTCCTATGAAGCGGTAGAAACCC 1057
||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 715 CACTCGCGGGACTTATCTACGGTGATGTGTTCATCGGTTCTTATGAAGCGGTAGAAACCC 774
Query 1058 GAGAGATCCGAGTGTAATTAACCGGGTTTTGTGAATGCTTGATGTTTGCTTGTTGGTTTG 1117
| ||||||||||||||||| || ||||||||||| ||||||||| ||| ||| || ||||
Sbjct 775 GTGAGATCCGAGTGTAATTGACTGGGTTTTGTGATTGCTTGATGGTTGGTTGATGTTTTG 834
Query 1118 TTTGCGTGTTTATGTTTGGTGTCCATTTTCTTCCAAGATTGTATGTAGAGAAAACaaaaa 1177
||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |||||
Sbjct 835 TTTGCGTGTGTATGTTTGGTGTCCACTTTCTTGCAAGATTGTATGTAGAGAAAAGAAAAA 894
Query 1178 aaaaTTAAAGTTATGTCGTGTTAATAAGAAAATGTATATA--TTTCACTTCATGTCTTTT 1235
|| |||||||| |||||||||||||||||||||| ||||||||||| || |||
Sbjct 895 AA-------GTTATGTCCTGTTAATAAGAAAATGTATATACATTTCACTTCATCTCCTTT 947
Query 1236 ATTTTTAACGTATAGCAT-T--GGATTTCTTTCATATGTATTTGCATTCTATTTCTATCG 1292
||||||||||||||||| | || |||||||||||||| |||| | ||| |||| |
Sbjct 948 -TTTTTAACGTATAGCATGTTTGG-TTTCTTTCATATGTTTTTG--T---ATT-CTATGG 999
Query 1293 CATTTTACTTTCATAA 1308
||||||||||||||||
Sbjct 1000 CATTTTACTTTCATAA 1015
Score = 390 bits (211), Expect = 2e-107
Identities = 244/260 (94%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 1 CAAAAAATGGTGAAGATCGAAGTTGGAAGTGTGGGTGACTCATTCAGTGTATCATCTCTA 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 33 CAAAAAATGGTGAAGATCGAAGTTGGAAGTGTGGGAGACTCATTCAGTGTATCATCTCTT 92
Query 61 AAAGCTTACTTGTCTGAGTTTATCGCAACTCTTCTCTTCATATTTGCCGGTGTTGGCTCT 120
|||||||||||||||||||| |||||||||||||||||| |||| || || |||||||||
Sbjct 93 AAAGCTTACTTGTCTGAGTTCATCGCAACTCTTCTCTTCGTATTCGCAGGCGTTGGCTCT 152
Query 121 GCTATAGCGTTTGACAAACTAACCTCTGATGGAGCCTTGGACCCGGCTGGTCTTGTAGCG 180
||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 153 GCTGTTGCGTTTGCCAAACTAACCTCTGATGGAGCCTTGGACCCAGCTGGTCTTGTAGCA 212
Query 181 ATTGCGATTGCTCACGCGTTTG-TCTTTTCGTTGGAGTTTCCATTGCGGCTAATATATCT 239
||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 213 ATTGCAATTGCTCACGCGTTTGCTCTTTTCGTTGGAGTTTCCATTGCGGCTAACATTTCT 272
Query 240 GGTGGTCACCTTAACCCAGC 259
||||||||||||||||||||
Sbjct 273 GGTGGTCACCTTAACCCAGC 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5