BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475526
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65170.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1112 0.0
AT1G65140.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 496 2e-139
AT1G65160.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 424 8e-118
> AT1G65170.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:24209613-24211116 FORWARD LENGTH=780
Length=780
Score = 1112 bits (602), Expect = 0.0
Identities = 709/761 (93%), Gaps = 6/761 (1%)
Strand=Plus/Plus
Query 1 ATGATACTCAAGTCTCTGTGGCAAATTAGCGTTTTTGAAAGACAGAACAAAGTACGTCAG 60
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 1 ATGATACTCAAGTCTCTGTGGCAAATTAGCGTTTTCGCAAGACAGAACATAGTACGTCAA 60
Query 61 AGATTCACAGGCTCTTTTCTTAAGGAAGACATACTTCGTCTTTCTTTTATCAACAATCTC 120
|| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 61 AGCTTCACAGGCTCATTTCTTAAGGAAGACATACTTCGTATTTCCTTTATCAACAATCTC 120
Query 121 AGTCTCAGTCAACCTCCGGAAGCAAATAATGTCTTTGAACTGTTTGTATACATCTTGGAG 180
||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 121 AGTCTCAGTCAACCTCCGGAAGCAAATAACATCTTTGACCTATTTGTATACATCTTGGAG 180
Query 181 AATTTACCTCCCTGGAACCCGTACTTTGAAGTGTACGAATTGGCGAAAAAGATTTGCAAT 240
|| |||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AACTTACCTCCGTGGAATCCATACTTTGAAGTGTACGAATTGGCGAACAAGATTTGCAAT 240
Query 241 AGATGCAAGATGGATTTGGAGTATCCAGGATTATTCGAGAATCTTACATTCGAGAAGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AGATGCAAGATGGATTTGGAGTATCCAGGATTATTCGAGAATCTTACATTCGAGAAGTTC 300
Query 301 GTTCAGATCATAAGGATAGGCTTAAAGATGCCTTGTGATAAGGAAGGATGTAGGAAACGA 360
||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GTTCAAATCATCAGGATAAGCTTAAAGATGCCTTGTGATAAGGAAGGATGTGGGAAACGA 360
Query 361 AACTATGTTCAACGTATGATAAATAAACTTCCATCTGTTTTCACAATTGCACTTGAGTGG 420
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 361 AACTATGTTCAACGTATGATAAATAAACTTCCAACTGTTTTCACAATTGCGCTTGAGTGG 420
Query 421 GAGA-AGAATGAGACTGAAGGAGAGATATTCGATACAACTTCTGTTCTAGCGACTGAGAT 479
|| | | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 421 GA-ACACAATGAGACTGAAGGAGAGATATTTGATACAACTTCTGTTCTGGCGACTGAGAT 479
Query 480 TGATATTAGTGCAATATACCGATACGAAGGTGACAGTGCATTCACTAAATACCGTCTTGT 539
|||| |||||| ||||||| |||||||||||| |||||||| || ||||||||||||||
Sbjct 480 TGATGTTAGTGTGATATACCAATACGAAGGTGATAGTGCATTTACCAAATACCGTCTTGT 539
Query 540 CTCAATGGTTTGCTCGGATGGAGATCGATACAACTGTGTAGCTTATGAAAACAATAGATG 599
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 540 CTCAATGGTTTGCTCGGATGGAGATCGATACAACTGCGTAGCTTATGAAGACAATAGATG 599
Query 600 GGTCAGACACTTTTG-TTCTCAGAAAGAGGTTATTGGAGAGTGGGATGGTGTTCTCAGCA 658
||||||||| | ||| |||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 600 GGTCAGACA-TGTTGGTTCTCAGAAAAAGGTTATTGGAGACTGGGATGGTGTTCTCAGCA 658
Query 659 TTTTTCGAAAACTGCATATTCGACCTGAGATTCTATTTTTTGAAAATAGGGAGCAGATGT 718
|||||||| |||||||||||||| |||||||||| |||||||||||| || | |||||||
Sbjct 659 TTTTTCGAGAACTGCATATTCGATCTGAGATTCTGTTTTTTGAAAAT-GGAA-CAGATGT 716
Query 719 TTTCCGCGAAGGGATCTGAAGACTCGTGTGTTATTTCTTAG 759
|||||||| |||||||| ||| |||||||||||||||||||
Sbjct 717 TTTCCGCGCAGGGATCTCAAGCCTCGTGTGTTATTTCTTAG 757
> AT1G65140.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:24201617-24203226 FORWARD LENGTH=957
Length=957
Score = 496 bits (268), Expect = 2e-139
Identities = 379/431 (88%), Gaps = 13/431 (3%)
Strand=Plus/Plus
Query 323 TAAAGATGCCTTGTGATAAGGAAGGATGTAGGAAACGAAACTATGTTCA-ACGTATGATA 381
||||||||| |||||| |||||||||||| ||||||||||||||||| | || |||||||
Sbjct 527 TAAAGATGCTTTGTGACAAGGAAGGATGTGGGAAACGAAACTATGTTGATAC-TATGATA 585
Query 382 AATAAACTTCCATCTG-TTTTCACAATTGCACTTGAGTGGGAGAAGAATGAGACTGAAGG 440
| ||| |||||||||| |||| | | |||||||| |||||||||| |||||||| |||
Sbjct 586 AGTAACCTTCCATCTGCTTTT-ATAGTTGCACTTCAGTGGGAGAACAATGAGACCGAAAA 644
Query 441 AGAGATATTCGATACAACTTCTGTTCTAGCGACTGAGATTGATATTAGTGCAATATACCG 500
|||||||||||||||| |||||||||| |||||||| || ||||||||||| ||||| |
Sbjct 645 AGAGATATTCGATACAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCTATATATAG 704
Query 501 ATACGAAGGTGACAGTGCATTCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGGATGG 560
||| | ||||||||||||||| || |||||||||||||||||||||||||| ||| ||||
Sbjct 705 ATATGTAGGTGACAGTGCATTTACCAAATACCGTCTTGTCTCAATGGTTTGGTCGCATGG 764
Query 561 AGATCGATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGACACTTTTGTTCTCA 620
| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 765 AAATCTATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGACATTTTTGTTCTGA 824
Query 621 GAAAGAGGTTATTGGAGAGTGGGATGGTGTTCTCAGCATTTTTCGAAAACTGCATATTCG 680
|| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 825 GATAGAGGTTATTGGAGACTGGGATGGTGTTCTCCGCATTTTTCGAGAACTGCATATTCG 884
Query 681 ACCTGAGATTCTATTTTTTGAAAA---TAG------GGAGCAGATGTTTTCCGCGAAGGG 731
||||||||||||||| |||||||| || ||| ||||||||||||| | ||||
Sbjct 885 ACCTGAGATTCTATTCTTTGAAAACGCTATTCTAAAGGACCAGATGTTTTCCGAGCAGGG 944
Query 732 ATCTGAAGACT 742
|||||||||||
Sbjct 945 ATCTGAAGACT 955
> AT1G65160.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:24206224-24207738 FORWARD LENGTH=930
Length=930
Score = 424 bits (229), Expect = 8e-118
Identities = 374/441 (85%), Gaps = 21/441 (5%)
Strand=Plus/Plus
Query 273 ATTCGAGAATCTTACATTCGAGAAGATCGTTCAGATCAT-AAGGATAG-GCTTAAAGATG 330
|||| || || ||||||| ||||| ||| || || |||| || ||| | ||||||||||
Sbjct 423 ATTCAAGGATTTTACATTTGAGAATATCATTAAGGTCATCAA-GAT-GAACTTAAAGATG 480
Query 331 CCTTGTGATAAGGAAGGATGTAGGAAACGAAA-CTATGTTCAACGTATGATAAATAAACT 389
||||||||||||||||||||| |||||| ||| ||||||||| |||||||||| |||||
Sbjct 481 CCTTGTGATAAGGAAGGATGTGGGAAAC-AAAGCTATGTTCACCGTATGATAACCAAACT 539
Query 390 TCCATCTGTTTTCACAATTGCACTTGAGTGGGA-GAAGAATGAGACTGAAGGAGAGATAT 448
||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||
Sbjct 540 TCCATCTGTTTTCACAATTGCACTTGAGT-GGACAAAGAATGAGACTGCAGGAGAAATAT 598
Query 449 TCGATACAACTTCTGTTCTAGCGACTGAGATTGATATTAGTGCAATATACCGATACGAAG 508
|||||||| ||||||||| ||||||||||||||| ||| || ||||||| || |||||
Sbjct 599 TCGATACAGTTTCTGTTCTGGCGACTGAGATTGATGTTAATGTGATATACCAATGCGAAG 658
Query 509 GTGACAGTGC-AT-TCACTAAATACCGTCTTGTCTCAATGGTTTGCTCGGATGGAGATCG 566
|||||| | | || | || || ||||||||||||||||||||||||| | ||||| ||||
Sbjct 659 GTGACA-TTCGATAT-ACCAAGTACCGTCTTGTCTCAATGGTTTGCTTGCATGGAAATCG 716
Query 567 ATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGACA-CTTTTGTTCTCAGAAAG 625
|||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||| ||
Sbjct 717 ATACAACTGTGTAGCTTATGAAAACAATAGATGGGTCAGATATCTTC-GTTCTGAGATAG 775
Query 626 AGGTTATTGGAGAGTGGGATGG-TGTTCTCAGCATTT-TTCGAAAACTGCATATTCGACC 683
||||||||||||| ||||| | |||| ||||||||| || ||| | |||| || ||
Sbjct 776 AGGTTATTGGAGACTGGGA-GAATGTTGTCAGCATTTGTTT-AAA---GAATATCCGTCC 830
Query 684 TGAGATTCTATTTTTTGAAAA 704
||||||| ||||| |||||
Sbjct 831 ACAGATTCTGTTTTTCGAAAA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5