BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475528
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203... 1308 0.0
AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284... 725 0.0
AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:... 597 6e-170
> AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203841-24205775
REVERSE LENGTH=1312
Length=1312
Score = 1308 bits (708), Expect = 0.0
Identities = 916/1015 (90%), Gaps = 20/1015 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCAAATGCATCAGACT-CTGCGA-TGTTGAAGAGTTGGAGAAAGAATGCTCCTT 58
|||||||||||||| ||||| | |||| | ||||||||| |||||||| |||| ||||||
Sbjct 96 ATGGGTTCAAATGCGTCAGA-TCCTGC-AGTGTTGAAGACTTGGAGAAGGAATCCTCCTT 153
Query 59 CTTCTTCTTCTCTTGTCAGACTCTCTCAGCTTGCTAACGACAAATACGAATCCCCTCCTT 118
| | ||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 154 C--C-TCTACTCTTGTCAGACTTTCTCAGCTTGCTAACGAGAAATACGAGTCCCCTCCTT 210
Query 119 TCTCTTCCGGTGGACACAACTGGAGATTGGTTGTTTACCCAAAAGGAAACGAAGAGGACA 178
||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 211 TCTCTTCTGGTGCACACAACTGGAGATTGGTTGTTCACCCAAAAGGAAACGAAGCGGACA 270
Query 179 ATGGAA-TGGGTTTTGTTTCAATGTATGTGGAATGTCTCTCATCGACAACACCACCCATT 237
|||||| |||| ||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 271 ATGGAAGTGGG-TTTGTGTCTATGTATGTGGAATGCCTCTCATCGACAACACCACCCATT 329
Query 238 GATGTGTTTGCTTATCTCACTTTCTTTATCTTTAGCGAGGAAGAGAAGAAGTACCTCTCT 297
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 330 GATGTGTTTGCCTATCTCACTTTCTTTGTCTTCAGCGAGGAAGAGAAGAAGTACCTCTCT 389
Query 298 ATTCAAGATGTTGAAGTTAAGAGGTTCAATTCTTCAAAAACGGTTTGGGGATTGTCACAA 357
|||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 390 TTTCAAGATGTTGAAGTGAAGCGTTTCAATTCTTCAAAAACGGTTTGGGGATTGTCAAAA 449
Query 358 GCTCTTTCGATTGAAGCACTCAAAGACCGTGCAAAGGGATTTATCTTGTACGGAGAACTA 417
|||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 450 GCTCTTCCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGTACGGTGAAGAA 509
Query 418 CATGAGTTTGGAGCTCATGTGAAGATTGTTTCACGACCCGACTCCTTTGGTGAAGATCTC 477
|||||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 510 CATGAGTTCGGTGCTCATGTGAAGATTGTTTCACGACCCGCCTCTTTTGGTGAAGATCTC 569
Query 478 CCTTTCCACAAATTCTCTTGGACTATTCGTGATTTCTCCCTTCTCAGA-CAGAATGATTG 536
||||| |||||||||||||||||||||||||||||| | ||||| || ||||||||||
Sbjct 570 CCTTTTCACAAATTCTCTTGGACTATTCGTGATTTCGCTCTTCTG-GAACAGAATGATTA 628
Query 537 CGTTTCGAAAACCTTTCACATGGGAGAAAAGGATTGGACTCTAACTTTGTATCCAAAGGG 596
||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 629 CGTATCCAAAACCTTTCACATGGGAGAAAAGGATTGGACTCTAAAGTTGTATCCAAAGGG 688
Query 597 AGACTCTGAGGCAGATGGCGAGTTA-TCCCAGCATTTGCATTTAGCTGACGGTGAAGTTT 655
|||||||||||||||| | ||||| | | |||||||||||||||||||||||||| ||
Sbjct 689 GGACTCTGAGGCAGATGACAAGTTAATTC-AGCATTTGCATTTAGCTGACGGTGAAACTT 747
Query 656 TATTGAAGGGTGAGCTGGTTTTCGTGCGAGTAAACCTGCAGGTTCTAGACCCGCGTGGAT 715
|| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 748 TAGCCAAGGGTGAGCTGATTTTCGTGCGAGTAAACCTGAAGGTTCTAGACCCGCGTGGAT 807
Query 716 CTGATCACCTAAAAGGATGGACTAAAG-GTTGGATCATGAACTCGACCAAAGCGATGGG- 773
| ||||||||| |||| | || || ||||| |||||||||||| ||||||| ||||
Sbjct 808 CCAATCACCTAACAGGAAGC-CTTAACTGTTGGCTCATGAACTCGAACAAAGCG-TGGGG 865
Query 774 TCTTCCTCAATCCATGTCTTTAGATAAAATTCAGGGGGCTTACTTGGACCGTGAAGGTAC 833
||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||| ||
Sbjct 866 TCTTCCTCAATCCATGTCTTTCGATAAAAATGAGGGGGCTTACTTGGATCGTGAAGGGAC 925
Query 834 TTTGGAGGTAGAGATCGAATGTGAACTTGAAAACTCC-ATCAAAAACCATCCCTTCTTTT 892
||||||||||||||| ||||||||| || |||||||| || |||||||||||||||||||
Sbjct 926 TTTGGAGGTAGAGATTGAATGTGAAATTAAAAACTCCCAT-AAAAACCATCCCTTCTTTT 984
Query 893 AGGATATCTACCATGCCATGTCTACTACTCTAGAGTCTATGACTACTCTGTTTTTAGCGT 952
|||||||| |||||| || ||||||||||||||||||| |||||||||||||| |||||
Sbjct 985 AGGATATCAACCATGTCAGGTCTACTACTCTAGAGTCTGGGACTACTCTGTTTTAAGCGT 1044
Query 953 AAAAT-TGAATGTGAAGTTAACGCTCTATCTATTTTTAAGATATCTATGTATCTA 1006
|||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1045 AAAAACTGAATGTGAAGTTAACGCTCTATCTATGTTTAGGATATCTATGTATCTA 1099
Score = 65.8 bits (35), Expect = 8e-10
Identities = 50/56 (89%), Gaps = 6/56 (11%)
Strand=Plus/Plus
Query 896 ATATCTACCATGCCATGTCTACTACTCTA-GAGTCTATGAC-TACTCTGTTTTTAG 949
||||||||||||||||||||||||||||| || || | || ||||||||||||||
Sbjct 1154 ATATCTACCATGCCATGTCTACTACTCTATGA--CT-T-ACCTACTCTGTTTTTAG 1205
Score = 63.9 bits (34), Expect = 3e-09
Identities = 49/55 (89%), Gaps = 6/55 (11%)
Strand=Plus/Plus
Query 897 TATCTACCATGCCATGTCTACTACTCTA-GAGTCTATGAC-TACTCTGTTTTTAG 949
|||||||||||||||||||||||||||| || || | || ||||||||||||||
Sbjct 1094 TATCTACCATGCCATGTCTACTACTCTATGA--CT-T-ACCTACTCTGTTTTTAG 1144
> AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284469-24286145
REVERSE LENGTH=1190
Length=1190
Score = 725 bits (392), Expect = 0.0
Identities = 730/889 (82%), Gaps = 39/889 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTCAAATGCATCAGACTCTGCGATGTTGAAGAGTTGGAGAAAGAATGCTCCTTCT 60
||||||||| |||||||||| ||||| |||||||||| ||||||||||| | |||||||
Sbjct 67 ATGGGTTCATATGCATCAGATTCTGCAATGTTGAAGACTTGGAGAAAGACTCCTCCTTCG 126
Query 61 TCTTCTTCTCTTGTCAGACTCTCTCAGCTTGC-T-A--ACGA-CA-A-AT-ACGAATCCC 112
|||| ||||||||||||||| || || ||| | | | || | || | || || ||
Sbjct 127 TCTTGTTCTCTTGTCAGACTTTCACATCTTTCTTCACTACAAGCATATATAACTAA-GAA 185
Query 113 CTCCTTTCTCTTCCGGTGGACACAA-CTGGAGATTGGTTGTTTACCCAAAAGGAAACGAA 171
| || | ||| || | | || | ||||||||||||||||||||||||||||||||
Sbjct 186 AT-GTTGC-CTT-TTTTGTA-AAAATCAGGAGATTGGTTGTTTACCCAAAAGGAAACGAA 241
Query 172 GAGGACAATGGAATGGGTTTTGTTTCAATGTATGTGGAATGTCTCTCATCGACAACACCA 231
||||||||||||| ||| ||||| || ||||||||||||||||||||||| |||||||||
Sbjct 242 GAGGACAATGGAAAGGGCTTTGTGTCTATGTATGTGGAATGTCTCTCATCCACAACACCA 301
Query 232 CCCATTGATGTGTTTGCTTATCTCACTTTCTTTATCTTTAGCGAGGAAGAGAAGAAGTAC 291
|||||||||||||||| ||||||| |||||||| |||||| | || |||| || ||||||
Sbjct 302 CCCATTGATGTGTTTGATTATCTCTCTTTCTTTGTCTTTAACAAGAAAGACAACAAGTAC 361
Query 292 CTCTCTATTCAAGATGTTGAAGTTAAGAGGTTCAATTCTTCAAAAACGGTTTGGGGATTG 351
||||| || |||||||||||||||||| | |||| |||||| ||||||||||||||||||
Sbjct 362 CTCTCAATCCAAGATGTTGAAGTTAAGCGTTTCAGTTCTTCTAAAACGGTTTGGGGATTG 421
Query 352 TCACAAGCTCTTTCGATTGAAGCACTCAAAGACCGTGCAAAGGGATTTATCTTGTACGGA 411
|| ||||| | ||| ||||| || ||| |||| |||||||||||||||| || | |||
Sbjct 422 CCAAAAGCTATGTCGCTTGAAACATTCACTGACCCTGCAAAGGGATTTATCGTGGAAGGA 481
Query 412 GAACTACATGAGTTTGGAGCTCATGTGAAGATTGTTTCA-CGACCCGACTCCT-TTGGTG 469
|||| | ||||||||| |||||||||||||||| |||| | ||||| | ||| ||| ||
Sbjct 482 GAACCATGTGAGTTTGGTGCTCATGTGAAGATTGCTTCATC-ACCCGTC-CCTGTTGATG 539
Query 470 AAGA-TCTCCCTTTCCACAAATTCTCTTGGA-CTATTCGTGATTTCTCCCTTCTCAGACA 527
| || ||||||||| |||||||||||||||| | |||||||||||||| |||| | |||
Sbjct 540 A-GAATCTCCCTTTTCACAAATTCTCTTGGAGC-ATTCGTGATTTCTCTGTTCTGAAACA 597
Query 528 GAATGATTGCGTTTCGAAAACCTTT-CACATGGGAGAAAAGGATTGGACTCTAACTTTGT 586
|||||||||| | || ||||||||| || ||||||| |||| |||||||||||||| |||
Sbjct 598 GAATGATTGCATATCTAAAACCTTTGCA-ATGGGAGGAAAGAATTGGACTCTAACTGTGT 656
Query 587 ATCCAAAGGGAGACTCTGAGGCAGATGGCGAGTTATCCCAGCATTTGCATTTAGCTGACG 646
|||||||||||||||||||||||||| |||||| | | || | ||||||||||||||||
Sbjct 657 ATCCAAAGGGAGACTCTGAGGCAGATAACGAGTTCTGCAAGTACTTGCATTTAGCTGACG 716
Query 647 GTGAAGTTTTATTGAAGGGTGAGCTGGTTTTCGTGCGAGTA-AACCTGCAGG--TTCTAG 703
||||||| |||| | |||||| || ||| |||||||| | ||| | ||| || |||
Sbjct 717 GTGAAGTCTTATCGCCTGGTGAGATGATTTCCGTGCGAGCACAAC-TA-AGGGCTT-TAG 773
Query 704 ACCCGCGTGGATCTGATCACCTAAA-AGGATGGACTA-AAGGTTGGATCATGA-ACTCGA 760
||||||||||||| | ||| ||| || ||| || || ||||||||| | |||
Sbjct 774 ACCCGCGTGGATCCAAACACA-AAACAGTCTGG-CTTCAACAATGGATCATGGCAG-CGA 830
Query 761 CCAAAGCGATGGGTCTTCCTCAATCCATGTCTTTAGATAAAATTCAGGGGGCTTACTTGG 820
||||||||| |||| ||||||||||| ||||||||| | | |||||| |||||||||||
Sbjct 831 CCAAAGCGAGGGGTATTCCTCAATCCTTGTCTTTAGCTGATCTTCAGGAGGCTTACTTGG 890
Query 821 ACCGTGAAGGTACTTTGGAGGTAGAGATCGAATGTGAACTTGAAAACTC 869
| ||||| ||||||| | || ||||||||||||||| ||| |||||
Sbjct 891 A---TGAAGATACTTTGAATGTGGAGATCGAATGTGAAGTTGTGAACTC 936
> AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:24164286-24165679
REVERSE LENGTH=687
Length=687
Score = 597 bits (323), Expect = 6e-170
Identities = 380/407 (93%), Gaps = 5/407 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCAAATGCATCAGACTCTGCGATGTTGAAGAGTTGGAGAAAGAATGCTCCTTCT 60
||||||||||| |||||||| ||||| |||||||| | |||||||| ||| | ||| ||
Sbjct 1 ATGGGTTCAAAGGCATCAGATTCTGCAATGTTGAAAACTTGGAGAAGGAA--C-CCTCCT 57
Query 61 TCTTCTTCTCTTGTCAGACTCTCTCAGCTTGCTAACGACAAATACGAATCCCCTCCTTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCTTCTTCTCTTGTCAGACTCTCTCAGCTTGCTAACGACAAATACGAATCCCCTCCTTTC 117
Query 121 TCTTCCGGTGGACACAACTGGAGATTGGTTGTTTACCCAAAAGGAAACGAAGAGGACAAT 180
|| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 118 TCGTCCGGTGGACACAACTGGAGATTGGTTGTTTACCCGAAAGGAAACGAAGCTGACAAT 177
Query 181 GGAATGGGTTTTGTTTCAATGTATGTGGAATGTCTCTCATCGACAACACCACCCATTGAT 240
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 178 GGAAGGGGCTTTGTTTCAATGTATGTGGAATGCCTCTCATCGACAACACCACCCATTGAT 237
Query 241 GTGTTTG-CTTATCTCACTTTCTTTATCTTTAGCGAGGAAGAGAAGAAGTACCTCTCTAT 299
||||||| || |||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct 238 GTGTTTGTCT-ATCTCACTTTCTTTGTCTTTAGCGAAGAAGAGAAGAGGTACCTCTCTAT 296
Query 300 TCAAGATGTTGAAGTTAAGAGGTTCAATTCTTCAAAAACGGTTTGGGGATTGTCACAAGC 359
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 297 TCAAGATGTTGAAGTTAAGAGGTTCAATTCCTCAAAAACGGTTTGGGGATTGTCACAAGT 356
Query 360 TCTTTCGATTGAAGCACTCAAAGACCGTGCAAAGGGATTTATCTTGT 406
|||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 357 TCTTCCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGT 403
Score = 115 bits (62), Expect = 8e-25
Identities = 78/86 (91%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 573 GACTCTAACTTTGTATCCAAAGGGAGACTCTGAGGCAGATGGCGAGTTATCCCAGCATTT 632
|||||||| |||||||||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 438 GACTCTAAAGTTGTATCCAAAGGGGGACTCTGAGGCAGATGACAAGTTATCCCAGCATTT 497
Query 633 GCATTTAGCTGACGGTGAAGTTTTAT 658
||||||||||||||| ||| |||||
Sbjct 498 GCATTTAGCTGACGGGGAAACTTTAT 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5