BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475532
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65220.1 | Symbols: | ARM repeat superfamily protein | chr1... 2159 0.0
AT5G36230.1 | Symbols: | ARM repeat superfamily protein | chr5... 1371 0.0
> AT1G65220.1 | Symbols: | ARM repeat superfamily protein | chr1:24226111-24228970
FORWARD LENGTH=1500
Length=1500
Score = 2159 bits (1169), Expect = 0.0
Identities = 1319/1387 (95%), Gaps = 27/1387 (2%)
Strand=Plus/Plus
Query 42 GTTTCGTCTCCAG-TTTAATCTCTCTAGCGTCTTGGTTTATGAGCTCAAAGGAGAAACCC 100
||||||||||| | |||||||| |||| |||||||||||||||||||||||||||| |||
Sbjct 57 GTTTCGTCTCC-GATTTAATCTTTCTA-CGTCTTGGTTTATGAGCTCAAAGGAGAAGCCC 114
Query 101 ACTCTCGGAGGTACGCGGATTAAGACCCGCAAAAGGAATATTGCTGCTCCTCTCGACCCT 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 ACTCTCGGAGGTACGCGGATTAAGACCCGCAAAAGGAATATTGCTGCTCCTCTCGACCCT 174
Query 161 GCTGCTTTTTCTGATGCTGTAGTTCAGATTTATCTGGATAATGCTGGTGATCTGGAACTT 220
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GCTGCTTTTTCTGATGCACTAGTTCAGATTTATCTGGATAATGCTGGTGATCTGGAACTT 234
Query 221 GTTGCCAAAAGTTTAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTT 280
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GTTGCCAGAAGTTTAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTT 294
Query 281 GAGGTTGTTTTCATTGGAGGACGTACACAAACTGGTTCAGTGAAATCTGATGAAGGGGAA 340
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 295 GAGGTTGTTTTCATTGGAGGACGTACTCAAACTGGTTCAGTGAAATCTGATGAAGGGGAA 354
Query 341 CGCCACCCTTACTCTATAATCGACTGTGAACCAACGCGTGAAGCTATTTTACCATCAGTT 400
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 355 CGCCACCCTTACTCTATAATCGACTGTGAACCAAAGCGTGAAGCTATTTTACCATCAGTT 414
Query 401 GTATACATACAGAAAATTTTGCGGAGGAAAGCCTTCCTTATTAAGAACCTTGAAAATGTT 460
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 415 GTATACATACAGAAAATTTTGCGGAGGAAAGCCTTCCTTATTAAGAACCTTGAGAATGTT 474
Query 461 ACGCGGAGATTCTTGCAGTCACTGGAGCTTTTTGAGGAGAATGAGAGGAAGAAGCTTGCA 520
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ACACGGAGATTCTTACAGTCACTGGAGCTTTTTGAGGAGAATGAGAGGAAGAAGCTTGCA 534
Query 521 ATATTCACAGCGCTCGCATTTTCCCAGAAGCTCTCAGGATTACCTGCAGAGACTGTCTTC 580
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 535 ATATTCACAGCACTTGCATTTTCACAGAAGCTCTCAGGATTACCTGCAGAGACTGTCTTC 594
Query 581 CAGCCATTGCTTAAGGATAATCTTGTTGCCAAAGGGATAGTTCTCAATTTTGTAACAGAC 640
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CAGCCATTGCTTAAGGATACTCTTGTTGCCAAAGGGATAGTTCTCAATTTTGTAACAGAC 654
Query 641 TTCTTCAATGAATATTTGGTTGAGAACAGTCTTGATGACTTGATTTCTATTCTGAGGCGT 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTCTTCAATGAATATTTGGTTGAGAACAGTCTTGATGACTTGATTTCTATTCTGAGGCGT 714
Query 701 GGCAAGATGGATGACAAACTCTTGGAGTTCCTGCCACCCACAAAGCGGACTACTGAAAGT 760
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 715 GGCAAGATGGATGACAAACTCTTGGAGTTCCTGCCACCCACAAAGCGGACTACAGAAAGT 774
Query 761 TTTGCCGAGCATTTCACCAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAA 820
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTTGCCGAGCATTTCACTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAA 834
Query 821 ATATTTGAGGTGAAGCTGAAGGAAATCAAAGCGGTCCTTACGAGCCAAGTGACAGAGGAA 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATATTTGAGGTGAAGCTGAAGGAAATCAAAGCGGTCCTTACGAGCCAAGTGACAGAGGAA 894
Query 881 ATAAACGTAGATGAAGTGATTGAAACGGTGAAGCAACAAGTGAAAGATGCAAAGCTGCCT 940
||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 895 ATAAACGTAGATGAAGTGACTGAAATGGTGAAGCAACAGGTGAAAGATGCAAAGCTGCCA 954
Query 941 GAGATTGAGGTTGTGCATGTGATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGG 1000
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GAGACTGAGGTTGTGCATGTGATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGG 1014
Query 1001 AAAAACCAGCAGCAAAATTCAAATGCTGTATTACGCCAAGTGAAAACATGGGCGCCACTT 1060
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1015 AAAAACCAGCAGCAGAATTCGAATGCTGTATTACGCCAAGTGAAAACATGGGCACCCCTT 1074
Query 1061 CTGAACACGCTGTGCT-GCAGCGGGAACATGGAGATGGAACTGATGTACAAAGTACAGAT 1119
|||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1075 CTGAACACGCTGTG-TAGCACCGGGAACATGGAGATGGAACTGATGTATAAAGTACAGAT 1133
Query 1120 GCAATGCTATGAAGATGCAAAGCTGATGAAAGTGTTTCCAGAGGTAGTGAGGTCTCTGTA 1179
|||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1134 GCAATGCTATGAGGATGCAAAGCTGATGAAAGTGTTTCCTGAGGTAGTGAGATCTCTGTA 1193
Query 1180 TGAACTTGATGTGCTCGCTGAAGACACCATTCTCCACTGGTATCGCAAAGGGACCAACCC 1239
|||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1194 TGAACTGGATGTGCTTGCGGAAGACACCATTCTGCACTGGTATCGCAAAGGGACCAACCC 1253
Query 1240 AAAGGGCAGGCAAGCGTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTGGAAGAGGC 1299
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 TAAGGGCAGGCAAACGTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTCGAAGAGGC 1313
Query 1300 CGAAGAAGAGGAGTGAGTGAGA---T-T--TTC---------------ACTCTCTTCTAA 1338
|||||||||||||||||||||| | | ||| ||||||||||||
Sbjct 1314 CGAAGAAGAGGAGTGAGTGAGACGCTCTGCTTCTTGTTTTCTCTTTTTACTCTCTTCTAA 1373
Query 1339 TAAAACAAACACAATCTTTTACTTTTCTTAACGCAAAATTCAGATGCTCTACATTGTTGG 1398
||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1374 TAAAAGAAAGACAATATTTTACTTCTCTTAACGCAAAATTCAGATGCTCTACATTGTTGG 1433
Query 1399 TGA-TTG 1404
||| |||
Sbjct 1434 TGACTTG 1440
> AT5G36230.1 | Symbols: | ARM repeat superfamily protein | chr5:14273384-14277026
FORWARD LENGTH=1624
Length=1624
Score = 1371 bits (742), Expect = 0.0
Identities = 1097/1266 (87%), Gaps = 34/1266 (3%)
Strand=Plus/Plus
Query 71 TCTTGGTTTATGAGCTCAAAGGAGAAACCCACTCTCGGAGGTACGCGGATTAAGACCCGC 130
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGGATTAAGACCCGC 186
Query 131 AAAAGGAATATTGCTGCTCCTCTCGACCCTGCTGCTTTTTCTGATGCTGTAGTTCAGATT 190
||| ||||||||||||||||||| |||||||| || ||||||||||| || || ||||||
Sbjct 187 AAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCAGTGGTCCAGATT 246
Query 191 TATC-TGGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGT-TTAGAGTCATCTGATC 248
|| | || ||||||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 247 TACCATG-ATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATT-GAGTCATCAGACC 304
Query 249 TTAATTTCTCAAGATACGGTGATATTTTCTTTGAGGTTGTTTTCATTGGAGGACGTACAC 308
|||||||| ||||||| ||||| || |||||||||||| ||||||| |||||||| ||||
Sbjct 305 TTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTATTTTCATAGGAGGACGCACAC 364
Query 309 AAACTGGTTCAGTGAAATCTGATGAAGGGGAACGCCACCCTTACTCTATAATCGACTGTG 368
|| |||| ||||||||||||||||||| ||||| || |||||||| |||| || ||||
Sbjct 365 AACCTGGAACAGTGAAATCTGATGAAGGAGAACGTCATACTTACTCTGTAATTGATTGTG 424
Query 369 AACC-AACGCGTGAAGCTATTTTACCATCAGTTGTATACATACAGAAAATTTTGCGGAGG 427
|||| || ||||||||| ||||| ||||| ||||| ||||||||||||||| |||| |||
Sbjct 425 AACCCAA-GCGTGAAGCCATTTTGCCATCTGTTGTCTACATACAGAAAATTCTGCGTAGG 483
Query 428 AAAGCCTT-CCTTATTAAGAACCTTGAAAATGTTACGCGGAGATTCTTGCAGTCACTGGA 486
|| ||||| ||| || |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 484 AA-GCCTTTCCTCATAAAGAACCTTGAAAATGTTACTCGGAGATTCCTGCAGTCACTGGA 542
Query 487 GCTTTTTGAGGAGAATGAGAGGAAGAAGCTTGCAATATTCACAGCGCTCGCATTTTCCCA 546
|||||||||||| ||||| |||||||||||||| || |||||||| || || ||||||||
Sbjct 543 GCTTTTTGAGGAAAATGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGCCTTTTCCCA 602
Query 547 GAAGCTCTCAGGATTACCTGCAGAGACTGTCTTCCAGCCATTGCTTAAGGATAATCTTGT 606
||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||
Sbjct 603 GAAGCTCTCAGGATTACCTCCGGAAACTGTCTTCCAGCCATTGCTCAAGGATAATCTTGT 662
Query 607 TGCCAAAGGGATAGTTCTCAATTTTGTAACAGACTTCTTCAATGAATATTTGGTTGAGAA 666
||||||||||||||| ||| || ||||||||||||||||| || ||||||||||||||
Sbjct 663 TGCCAAAGGGATAGTGCTCTCCTTCGTAACAGACTTCTTCAAGGAGTATTTGGTTGAGAA 722
Query 667 CAGTCTTGATGACTTGATTTCTATTCTGAGGCGTGGCAAGATGGATGACAAACTCT-TGG 725
||||||||| |||||||||||||||||||||||||| || ||||| ||||| || | |||
Sbjct 723 CAGTCTTGAAGACTTGATTTCTATTCTGAGGCGTGGGAAAATGGAAGACAACCT-TATGG 781
Query 726 AGTTCCTGCCACCCACAAAG-CGGA-CTACTGAAAGTTTTGCCGAGCATTTCACCAAGGC 783
| ||||| ||||| | ||| || | || ||||||||||||| || |||||||| || |
Sbjct 782 ATTTCCTACCACC-AGTAAGGCG-ATCTGCTGAAAGTTTTGCGGAACATTTCACGAATGA 839
Query 784 AGGATTGACAGCTCTGGTAGAGTACAATG-AAAGGAAAATATTTGAGGTGAAGCTGAAGG 842
||||||||| | ||| ||||||||| || |||| ||||| ||||||||||| |||| ||
Sbjct 840 AGGATTGACTGATCTAGTAGAGTACCATTCAAAG-AAAATGTTTGAGGTGAAACTGAGGG 898
Query 843 AAATCAAAGCGGTCCTTACGAGCCAAG-TGACAGAGGAAA-TAAACGTAGATGAAGTGAT 900
|||||||| | || ||||| ||| ||| | |||||||||| ||| ||||| ||||| ||
Sbjct 899 AAATCAAAACCGTTCTTACAAGC-AAGGTCACAGAGGAAAGTAAT-GTAGACGAAGTCAT 956
Query 901 TGAAACGGTGAAGCAACA-AGTGAAAGATGCAAAGCTGCCTGAGATTGAGGTTGTGCATG 959
|||| ||||||||||||| | | |||||||| ||| | ||||| ||||||||||||| ||
Sbjct 957 TGAATCGGTGAAGCAACAGA-TCAAAGATGCTAAGTTACCTGACATTGAGGTTGTGCGTG 1015
Query 960 T-GATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGGAAAAACCAGCAGCAAAAT 1018
| | | |||||||| ||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 1016 TTGTT-TGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAAT 1074
Query 1019 TCAAATGCTGTAT-TACGCCAAGTGAAAACATGGGCGCCACTTCTGAACACGCTGTGCTG 1077
||||| |||| | | ||||| |||||||||||||| ||||||||||||||| | || |
Sbjct 1075 GCAAATTCTGT-TCTGCGCCAGGTGAAAACATGGGCTCCACTTCTGAACACGTTCTG-TA 1132
Query 1078 C-AGCGGGAA-CATGGAGATGGAACTGATGTACAAAGTACAGATGCAATGCTATGAAGAT 1135
| ||||| || | | ||| ||||||||||||||||||| || |||||||||||||| |||
Sbjct 1133 CCAGCGGAAAGC-TAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGAT 1191
Query 1136 GCAAAGCTGATGAAAGTGTTTCC-AGAGGTAGTGAGGTCTCTGTATGAACTTGATGTGCT 1194
|||||||| |||||||| ||||| ||| ||||||||||| || |||||||| ||||| ||
Sbjct 1192 GCAAAGCTTATGAAAGT-TTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTCCT 1250
Query 1195 CGCTGAAGACACCATTCTCCACTGGTATC-GCAAAGGGACCAACCCAAAGGGCAGGCAAG 1253
|||||||||||||||||||||||||| || | ||||| |||||| ||||||||||||||
Sbjct 1251 CGCTGAAGACACCATTCTCCACTGGT-TCCGTAAAGGAACCAACTCAAAGGGCAGGCAAA 1309
Query 1254 CGTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTGGAAGAGGCCGAAGAAGAGGAGT 1313
| |||||||| | || || || |||||||||||||| |||||||| || ||||| ||||
Sbjct 1310 CCTTTGTGAAAAGTTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGT 1369
Query 1314 GAGTGA 1319
||||||
Sbjct 1370 GAGTGA 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5