BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475533
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65230.1 | Symbols: | Uncharacterized conserved protein (DU... 1685 0.0
> AT1G65230.1 | Symbols: | Uncharacterized conserved protein (DUF2358)
| chr1:24229148-24230902 FORWARD LENGTH=1018
Length=1018
Score = 1685 bits (912), Expect = 0.0
Identities = 983/1018 (97%), Gaps = 1/1018 (0%)
Strand=Plus/Plus
Query 1 ATAATGGAAATACACTCCGATGACTACTTCTTCCTTCCTCCTCCCTGCTTCTCCTCCCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAATGGAAATACACTCCGATGACTACTTCTTCCTTCCTCCTCCCTGCTTCTCCTCCCTC 60
Query 61 AGCCGCCTTTCTCCGGCGGCGCTTCTTCCGTCACTCTTGGCTTTCCTCTAAGATCCACCA 120
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 61 AGCCGCCTTTCTCCGGCGGCGCTTCTTCCGCCACTCCTGGCTTTCCTCTAAGATCCACCA 120
Query 121 CCGTCTTCCCCAAGTTATGAATGATTCCACCAGGACTGAAGTATCCATTGATAAATCAGA 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CCGTCTTCCCCAAGTTATGAATGATTCCACGAGGACTGAAGTATCCATTGATAAATCAGA 180
Query 181 AGTAGACAAGCTTGTTGACAGGATTGATTTTGGGGAATTATGCAATGATTTTGAGTGCAC 240
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AGTAGACAAGCTTGTTGACAAGATTGATTTTGGGGAATTATGCAACGATTTTGAGTGCAC 240
Query 241 AAGTAGCCCGCAAGTGGAATCCACAGCTAGACAACTTGTTCGCGACATTCTTGAAATCAG 300
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTAGTCCGCAGGTGGAATCCACAGCTAGACAACTTGTTCGCGACATTCTTGAAATCAG 300
Query 301 GGAAGGAAATCGTGCCTTTGCATGCTATGCAGTTTCCGTTAAATATAAGGATCCGGTTAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAAGGAAATCGTGCCTTTGCATGCTATGCAGTTTCCGTTAAATATAAGGATCCGGTTAG 360
Query 361 AAGTTTTACAGGTCGTGAGAAGTATAAAAGACCAATGTGGATAACTAGTGGATTAGAGAA 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 AAGTTTTACAGGTCGTGAGAAGTACAAAAGACCAATGTGGATAACTAGTGGATTAGAGAA 420
Query 421 TCCTACCGTGACGGTACAGGAGATGGTAATGTTATCGACCAGCGTCTTGCGTATTAAATG 480
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TCCTACCGTGACGGTACAAGAGATGGTAATGTTATCGACCAGCGTCTTGCGAATTAAATG 480
Query 481 GACAGTCAAAGGAAAACCCAAATCTATTCTTGCTGCTGTAAGTGGAGATTTGATAATCAA 540
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 481 GACAGTGAAAGGAAAACCAAAATCTATTCTTGCTGCTGTAAGTGGAGATTTGATAGTAAA 540
Query 541 AGTCAAATCTGAATTTACTCTTAACCAGATTAGTGGCCAAGTGATTGAGCATGAAGAGTC 600
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 541 AGTCAAATCTGAATTTACTCTTAACCAGATTAGTGGGCAAGTGTTTGAGCATGAAGAGTC 600
Query 601 TTGGGACTTATCTTCATCATCCCCTATTGCACAAGCCTATTTCTGGACATCCCGCCGCCT 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 TTGGGACTTATCTTCATCATCCCCTATTGCTCAAGCCTATTTCTGGACATCCCGCCGCCT 660
Query 661 CTTTGCTGCTTCTGAATCCGCAAAAGATTTATCCGATGTCACAAAAGACTTGACCGCCAA 720
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 661 CTTTGCTGCTTCTGAATCCGCAAAAGATGTCGCCGATGTCACAAAAGACTTGACCGCCAA 720
Query 721 TTTGACAACTCGAACAGAGGACACAGATATATATCGCGATCCAACCGATCCAAATAAGTT 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTGACAACTCGAAAAGAGGACACAGATATATATCGCGATCCAACCGATCCAAATAAGTT 780
Query 781 TTTCCAAAGAGACGACAGCTTTGAGAGAGATGTGTATCAAATTGCACTGTTTCTAGCCAT 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTCCAAAGAGACAACAGCTTTGAGAGAGATGTGTATCAAATTGCACTGTTTCTAGCCAT 840
Query 841 TGTCTATTTTGTTGTACTGTTCTTGAAGAACACTCTCTAGTTACCCTATCTCCCATCCTC 900
||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||
Sbjct 841 TGTCTATTTTGTTGTACAGTTCTTGAAGAACACAATCTAGTTACCTTCTCTCCCATCCTC 900
Query 901 TATAACAGATATGTAAATGCCTATATACTGTTGTATATGATCTGTATAAAAAA-CTGAAC 959
||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct 901 TATAACAGATATGTAAATGCCTATATATTGTTGTATATGATCTGTAAAAAAAAACTGAAC 960
Query 960 AAGAAAAGATATGTGTTTGTTTGTGTTGGAAGGAAGACTATTAAAATGATTTAATCTT 1017
||||||||| |||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 961 AAGAAAAGAGATGTGTTTGTTTGTGTTGGAAGAAAGACTATCAAAATGATTAAATCTT 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5