BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475538
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65270.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1831 0.0
> AT1G65270.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; Has 149 Blast hits to 149 proteins in 49 species: Archae
- 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). |
chr1:24241723-24244743 FORWARD LENGTH=1250
Length=1250
Score = 1831 bits (991), Expect = 0.0
Identities = 1071/1110 (96%), Gaps = 4/1110 (0%)
Strand=Plus/Plus
Query 1 AAAAAACCTCAATCGCCGGCAACAATGGCGAAGCTCACACTTCTCTTCTTCCTTTCCTTT 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AAAAAAACTCAATCGCCAGCAACAATGGCGAAGCTCACACTTCTCTTCTTCCTTTCCTTT 168
Query 61 CTCATCTTCTCCTCATCCATCGCTTTCCAATCAGACGAACTCCTCGTTGACGACGATGAA 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 169 CTCATCTTCTCCTCATCCATCGCTTTCCAATCAGACGAGCTCCTCGTTGACGACGACGAA 228
Query 121 TTTGGTCTAGAAGGAGCAAAGCCCCGCTCCACCGATCTTCACACATCATCTTCTTCTTCG 180
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 229 TTTGGTCTAGAAGGAGCAAAGCCCCGCTCCACCGATCTTTACACATCTTCTTCTTCTTCG 288
Query 181 CCGCAGCAGCAGCAACAGACTCCAACTATCCGGAGAAGATACTCAGATCCTACCGATTTG 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CCACAGCAGCAGCAACAGACTCCAACTATCCGGAGAAGATACTCAGATCCTACCGATTTG 348
Query 241 GATTCCAAAGTCCAATTTACTCTCGAACATGCCTTCGGTGACTCTGATTTCTCCCCCGCC 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GATTCAAAAGTCCAATTTACTCTCGAACATGCCTTCGGTGACTCTGATTTCTCCCCCGCC 408
Query 301 GGTACTTTCTCCGCTCGTCTCAAAACCTGGAGTCATGGCGGAAAGACATTAACGAAGCTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GGTACTTTCTCCGCTCGTCTCAAAACCTGGAGTCATGGCGGAAAGACATTAACGAAGCTG 468
Query 361 CGATTCTCTAGGAATGATTTTTCTGCTGAAGAGAAAGATGCATTCAAGAATCTGCTGAAA 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CGATTCTCTAGAAATGATTTTTCTGCTGAAGAGAAAGATGCATTCAAGAATCTGCTGAAA 528
Query 421 GGAGATGACTTTTATCGGATTCGACTTCCATCTAATGTGGTCAGTCCACCAGGGAGAGAG 480
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 529 GGAGATGACTTTTATCGGATTCGGCTTCCATCTAATGTGGTTAGTCCACCAGGGAGAGAG 588
Query 481 TTTGTGATTGCATCAGTGAGAGCTAGATGTCTACCACGGGATGGCTTGGATGAGCATTTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TTTGTGATTGCATCAGTGAGAGCTAGATGTCTACCACGGGATGGCTTGGATGAGCATTTC 648
Query 541 ATTATACACATGGAAGGTGCCAACATCTTGGCAGTTAGTTATGGTTCTCCTGGGGCGTGT 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 ATTATACACATGGAAGGTGCTAACATCTTGGCAGTTAGTTATGGTTCTCCTGGGGCGTGT 708
Query 601 CAATATCCTCGACAGTTGAAACTTCCAGCAAAATGGTCGTTTAACTCGCACACCATCCTG 660
||||||||||| || |||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 709 CAATATCCTCGCCAATTGAAACTTCCAGCAAAATGGTCGTTTAACTCTCACACAATTCTG 768
Query 661 AAAAGCAGTGAGCAGGCGCCAAGAACTCCAATATTCACTGAGGAGATTCTAGGCGGTGAG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 769 AAAAGCAGTGAGCAGGCGCCAAGAACTCCAATATTCACTGAGGAGATTCTAGGCAGTGAG 828
Query 721 AATGTAGAGGGAGAAGTTGAACCGCCACCAGAGAGATCATTTTGGGCAAAATATTGGATG 780
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 829 AATGTAGAGGGAGAAGTTGAACCACCACCAGAGAGATCATTTTGGGCGAAATATTGGATG 888
Query 781 TATTTGATACCGCTGGGACTCGTAGTGATGAACGCCGTAACACAAGCATCAAACATGGCT 840
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 889 TATTTGATACCGCTGGGACTCGTAGTGATGAATGCCGTGACACAAGCATCAAACATGGCT 948
Query 841 GAAGAACCCGCAGGTGGACAGGCAGGAGGTGCACAAATGCAACCAGCTGCCAGGAGAAGA 900
|||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 949 GAAGAACCTGCGGGTGGACAGGCAGGAGGTGCACAAGTGCAACCAGCTGCCAGGAGAAGA 1008
Query 901 TGATTCCACTTTTACTTCTCCCAAAGCAATCAAAGGTAGACCACAGCC-CAATTACGATG 959
|||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct 1009 TGATTCCACTTTTACTTCTCCCAAAGCAATGAAAGGTAGACCAC-GCCGCAATTACTATG 1067
Query 960 AACAAATTTCTTTTTTACATAGCAGTCTTTAAATCTTATGATCGC-AGGAGGATACATTT 1018
|||||||||| |||||| |||||||||||||||||||||||| | ||||| ||||||||
Sbjct 1068 CACAAATTTCTCTTTTACCTAGCAGTCTTTAAATCTTATGATC-CTAGGAGAATACATTT 1126
Query 1019 ATATATTTGTTGGGCTATCTTCGCAGCTGTGGATTTATATTATTTGGTTGTAACTTATAA 1078
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 ATATATTTGTTTGGCTATCTTCGCAGCTGTGGATTTATATTATTTGGTTGTAACTTATAA 1186
Query 1079 GTCACGCGGAATTAACTGAATTCGGAATTT 1108
|||||| |||||||| |||||||||| |||
Sbjct 1187 GTCACGTGGAATTAAATGAATTCGGAGTTT 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5