BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475539
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65280.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 2872 0.0
> AT1G65280.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr1:24245296-24248762 FORWARD LENGTH=2132
Length=2132
Score = 2872 bits (1555), Expect = 0.0
Identities = 1728/1810 (95%), Gaps = 18/1810 (1%)
Strand=Plus/Plus
Query 1 GGATTGAACAAAATGGGTAAGCACAGGAAGAGAGAGGT-TGATTCGGGAGACGATACTCC 59
||||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 113 GGATTGAACAATATGGGTAAGCACTGGAAGAGAGA-TTCTGATTCGGGAGACGATACTCC 171
Query 60 ATCTTCAGCAACATCGTCGTCGTCTGTTTCGTCATACAGCTCCGACGAGTCTGATTCGTC 119
||| |||||||||||||| | || |||||||||||||| ||||| |||||||| ||
Sbjct 172 ATCGTCAGCAACATCGTC--C-TC---CTCGTCATACAGCTCAGACGAATCTGATTCATC 225
Query 120 TTCTAGAAAGCGGCGGAAGAAGCAAAAggagcggcggaaaagtgacggaggaagttatga 179
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TTCTAGAAAGTGGCGGAAGAAGCAAAAGGAGCGGCGGAAAAGTGACGGAGGAAGTTATGA 285
Query 180 gagagagaagcggaggaagagggagaaggaaaggaagaggaagaagattgagaggaaaga 239
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 286 GAGAGAGAAACGGAGGAAGAGAGAGAAGGAGAGGAAGAGGAAGAAGATTGAGAGGAAGGA 345
Query 240 gagaaagaggagagatatgaagaagaagaagaagactaagaagCGTGATTATGAGTCTGA 299
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 GAGAAAGAGGAGGGATATGAAGAAGAAGAAGAAGACTAAGAAGCGTGAATATGAGTCTGA 405
Query 300 TACTGAGTCTCACTCTGCTTCTGATTCATTCTCTGATCAAGAGGATGAGCCTGAAACTGT 359
|||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 406 TACTGAGTCTTACTCTGGTTCTGATTCATTCTCTGATCAAGAGGATGATCCTGAAACTGT 465
Query 360 GG-TAAAGGAGATG-TTGTTGGAGTTTCCTAATGTTGGCAATGATTTGAAACAGCTTTTG 417
|| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GGTTAAA-GAGATGCTT-TTGGAGTTTCCTAATGTTGGCAATGATTTGAAACAGCTTTTG 523
Query 418 AAAATGATAGATGATGGGCAAGCGGTTGATATAAAGGGTATTTCCGAGAGTGCTTTGAAG 477
|||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 524 AAAATGATTGATGACGGACAAGCGGTTGATATAAAGGGTATTTCCGAGAGCACTTTGAAG 583
Query 478 AAGCGGTTGAAGAAGCTGTTTCTTTCTTTGAAGTTGAAGGAACGTGGGGATAGAGTGTTT 537
||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 584 AAGAGGTTGAAGAAGTTGTTTCTTTCTTTGAAGTTAAAGGAACGTGGGGATAGAGTCTTT 643
Query 538 TTGTTACCACCAGGTGCTTCTCCTTCTTTAGATGTAGTGGGGCATCTTATTAAAGGCAGT 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 644 TTATTACCACCAGGTGCTTCTCCTTCTTTAGATGTAGTGGGGCATCTTATTAAAGGCGGC 703
Query 598 GAAGAAGAAGTTGAGAAAAACCTTGAGGATTCTGT-CCCATTGAA-GAACACTGAAAAGG 655
|||||||| |||||||||| |||||| |||||| | ||||||||| ||| ||||||||||
Sbjct 704 GAAGAAGATGTTGAGAAAAGCCTTGACGATTCT-TCCCCATTGAAGGAA-ACTGAAAAGG 761
Query 656 GTTTGCCAGATGAGAACGGTTTGGGATCGAATTCAGCTGATGATGTTGCTGGTCCAAAGA 715
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 762 GTTTGGCAGATGAGAACGGTTTGGGATCGAATTCAGCTGATGATGTTACTGGTCCAAAGA 821
Query 716 AAAGGGTGATTGGACCTGCAATGCCATCGGCTGAGTTACTTGCTGCAGCAGCAAAGCTAA 775
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 822 AAAGGGTGATTGGACCTGCAATGCCATCAGCTGAGTTACTTGCTGCAGCAGCTAAGCTAA 881
Query 776 CAGAAGCTCAAGCTGAACTTAGAGAAGCTGAGCTAGAAGAAGATTCACAATATTTCATTG 835
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 882 CAGAAGCTCAAGCTGAACTTAGAGAAGCTGAGCTAGAAGAAGATTCAGAATATTTCATTG 941
Query 836 GACCTGCTCCACCAGCTGTTGTTGCAGAAGTTGCATCGTCGAATGAGGCAGAGCGATTTG 895
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 942 GACCTGCTCCACCAGCTGTTGTTGCAGAAGTTGCATCGTCGAACGAGGCAGAGCGATTTG 1001
Query 896 AAGAGGTGACACGGATTATGGAAGCTGACGCTGATAGTCCATACGACGTCTTAGGAGTGA 955
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1002 AAGAGGTGACACGGATTATGGAAGCTGACGCTAATAGTCCATACGACGTCTTAGGAGTGA 1061
Query 956 ATCACAATATGGCTGCTGATAATATGAAGAAGAGGTACTGGAAGCTGTCTCTTCTTGTTC 1015
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1062 ATCACAATATGGCTGCTGATAATATGAAGAAAAGGTACTGGAAGCTGTCGCTTCTTGTTC 1121
Query 1016 ACCCAGACAAATGTTCTCATCCCCAAGCCCAGGAAGCTTTTGTTTTACTGAATAAAGCTT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 ACCCAGACAAATGTTCTCATCCCCAAGCCCAGGAAGCTTTTGTTTTACTGAATAAAGCTT 1181
Query 1076 TCAAAGAATTACAAGATCCAGAAAAGAGAAAAGCAATGGATGATAAGATTAAACTCAAGG 1135
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1182 TCAAAGAATTACAAGATCCAGAAAAGAGAAAAGCAATGGATGACAAGATTAAACTTAAGG 1241
Query 1136 AGGAACAAGAGGCATTTAAGGTTGAATTACGTTCAATGCAAGAAGCGGCACAATGGAGAA 1195
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1242 AGGAACAAGAGGCATTTAAGGTTGAATTACGTTCAATGCAAGAAGCAGCACAGTGGAGAA 1301
Query 1196 GATCACAAGGCATATCAATGGAAGGTGACGCAGAGCTGCTGGCAGCAACCGAAGTTAAAC 1255
||||||||||||||||||||||||| || |||||| || ||||||||||||| |||||||
Sbjct 1302 GATCACAAGGCATATCAATGGAAGGGGATGCAGAGTTGTTGGCAGCAACCGAGGTTAAAC 1361
Query 1256 CTGTACCTAAAAGAGACGAGTGGATGACCACTCTGCCTCCTGAAAGAAAGGTTGGAGTGG 1315
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 CTGAACCTAAAAGAGATGAGTGGATGACCACTCTGCCTCCTGAAAGAAAGGTTGGAGTGG 1421
Query 1316 CTGTGCAGCAATCAACCACATTTAGCAGAAATGCTAGAGAAGGTCGCGGAGACACTACAG 1375
| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1422 CCGTGCAGCAATCAACCACGTTTAGTAGAAATGCTAGAGAAGGACGCGGAGACACTACAG 1481
Query 1376 CCTGGACCGATACTCCTATGGACAAAGCTGAAAGAGCAAAGATGAATTACTTGGAGGCAT 1435
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CGTGGACTGATACTCCTATGGACAAAGCTGAAAGAGCAAAGATGAATTACTTGGAGGCAT 1541
Query 1436 ACAACAAGGCGAGTGCGCTTGCATCAAACGAAGGGGAAAATATGAAAAGAAGCATGGATG 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 ACAACAAGGCGAGTGCGCTTGCATCAAACGAAGGGGAAAATATGAAAAGAAGCATGGATG 1601
Query 1496 CTGAGCTTGTGGACAAGTATAACAAAGAGAAAAGAGCAAAGTCTCTGGTAGAGAAGCACA 1555
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 CTGAGCTTGTAGACAAGTATAACAAAGAGAAAAGAGCAAAGTCTCTGGTAGAGAAGCACA 1661
Query 1556 GAGAAGACTCTTCTTCTTCTTCAAGCCGTCTGAAGAAGAAGAAGAAATTGTCTTCATCCA 1615
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1662 GAGAAGACTCTTCTTCTTCTTCAAGCCGTCTGAAAAAGAAGAAGAAATTGTCTTCATCCA 1721
Query 1616 AAGAGAAAACCGAGAAGGACGAGTGGGTAGGGAAACATCCGTGGAAGCCATGGGACCGTG 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 AAGAGAAAACCGAGAAGGACGAGTGGGTAGGGAAACATCCGTGGAAGCCATGGGACCGTG 1781
Query 1676 AAAACGATCTTACTGCCGGGAGACAGAATGTGAAACTTGATGCCGAGGGTATGGCTGAAG 1735
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1782 AAAACGACCTTACTGCCGGGAGACAGAATGTGAAACTTGATGCCGATGGTATGGCTGAAG 1841
Query 1736 GTTTGGCTTCCAAGTTTTCTTCTGGGAATTTCCAAAGAAGCTTCCTTT-GAAGCTTGTTG 1794
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1842 GTTTGGCTTCCAAGTTTTCTTCTGGGAATTTCCAAAGAAGCTTCCTTTAGA-GCTTGTTG 1900
Query 1795 CAGGAAACTT 1804
|||||||||
Sbjct 1901 AAGGAAACTT 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95782639860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5