BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475541

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65295.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   808    0.0  


> AT1G65295.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; EXPRESSED IN: 22 plant structures; EXPRESSED 
DURING: 13 growth stages; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT5G01015.1); Has 90 Blast hits 
to 90 proteins in 15 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:24251511-24252303 FORWARD 
LENGTH=573
Length=573

 Score =  808 bits (437),  Expect = 0.0
 Identities = 537/581 (92%), Gaps = 23/581 (4%)
 Strand=Plus/Plus

Query  1    ACATAATaaaccaaacccaacaaagaaaagaaaatttcaaaacc-aaaaaaaaaaaaaTG  59
            ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct  1    ACATAATAAACCAAACCCAACAAAGAAAATAAAATTTC-AAACCAAAAAAAAAAAAAATG  59

Query  60   AGAACTTTAGAAGAATCGAAGATCTCTATTGTCTTCTTGTTACTTCTTCTCTTCTCAATC  119
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  60   AGAACTTTAGAAGAATCGAAGATCTCTATTGTCTTCTTGTTGCTTCTTCTCTTCTCAATC  119

Query  120  TTCATCAGTTTCAGTCACCAGGCAAATGAGGTATTACCATCTG-A--AG--AA-GAGAAG  173
            |||||||||| |||||||||||||||||||||||||||| ||| |  ||  || |||| |
Sbjct  120  TTCATCAGTTCCAGTCACCAGGCAAATGAGGTATTACCAGCTGAAGGAGATAATGAGATG  179

Query  174  ATGATGGTGCCATTGATGGAGGAGAAGTTTATGGTAATGAATGAAACAAGAAGGAAGCTT  233
            |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||
Sbjct  180  ATGATGGTGCCATTGGGGGAGGAGAAGTTTATGGTAATGAATGAAACAAGAAGGAAACTT  239

Query  234  GGAAGTTTTCAGATATGTTCTGTTTGTACTTGTTGTGGTGGTGCTAAAGGTCTTTGCTTA  293
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  240  GGAAGTTTTCAGATATGTTCAGTTTGTACTTGTTGTGGTGGTGCTAAAGGTCTTTGCTTG  299

Query  294  CCTTCTCCTTGTTGCTATGCTATTAACTGCAACATCCCTAATAGACCCTTTGGTTACTGT  353
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  300  CCTTCTCCTTGTTGCTATGCTATTAACTGCAATATCCCTAATAGACCCTTTGGTTACTGT  359

Query  354  TCTTTCACTCCCAAAACTTGCAATTGCTTTGGTTGCCATATCTGAGATCTTCTACTTCAT  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  TCTTTCACTCCCAAAACTTGCAATTGCTTTGGTTGCCATATCTGAGATCTTCTACTTCAT  419

Query  414  TGTAATGTTTG-ATT----CAGG-GCAATCTAAATCTTGCTTGATTCATCTACAAGTGTG  467
            |||||| || | |      || | | |||||||||||||    |||||||| ||||||||
Sbjct  420  TGTAAT-TTGGGAGAGAAACAAGTG-AATCTAAATCTTG----ATTCATCTTCAAGTGTG  473

Query  468  AAAGGGAGGAAAAAA-GAAGCATATCTGTTCTTGGtttg-gttcttatttttaatttttg  525
            ||||||||||||||| |||| |||||||||||||||||| || ||| |  ||| ||||||
Sbjct  474  AAAGGGAGGAAAAAAAGAAGAATATCTGTTCTTGGTTTGAGT-CTTCTACTTATTTTTTG  532

Query  526  tctataatttatttttcagtcttcattaaatttcattaCCT  566
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  533  TCTATAATTTATTTTTCAGTCTTCATTAAATTTCATTACCT  573



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27176673527


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5