BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475543
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
AT1G41830.1 | Symbols: SKS6 | SKU5-similar 6 | chr1:15603617-15... 3013 0.0
> AT1G41830.1 | Symbols: SKS6 | SKU5-similar 6 | chr1:15603617-15607966
REVERSE LENGTH=2068
Length=2068
Score = 3013 bits (1631), Expect = 0.0
Identities = 1783/1856 (96%), Gaps = 11/1856 (1%)
Strand=Plus/Plus
Query 1 TCTCTCCCTCAACGCACTTAAATTTACATAACTAAGTGTGTGTCTATTCATAtcactcac 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 TCTCTCCCTCGACGCACTTAAATTTACATAACTAAGTGTGTGTCTATTCATATCACTCA- 84
Query 61 tctctctctcttcctcactctcacattctccctctctttattttttctctctcACCACAA 120
||||||||||||||||| || ||||||||||||| ||| ||||||||||||| ||||||
Sbjct 85 -CTCTCTCTCTTCCTCACACTTACATTCTCCCTCTATTT-TTTTTTCTCTCTCTCCACAA 142
Query 121 GAAACGCCGTAGTTCATTAAAAATGATGACGGTGGGCAGATCCGGAGGCACCGTCGTCCT 180
|||||||||| ||||||||||||||||| ||||||||||||||||||||| | | ||||
Sbjct 143 GAAACGCCGTCGTTCATTAAAAATGATGGCGGTGGGCAGATCCGGAGGCA-C--CATCCT 199
Query 181 ATTGTTCTGCCTATCATTCTTCGCGGCGGTAACCGCCGAGAGTCCATACCGATTCTTTGA 240
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 200 ATTGTTCTGCCTATCATTCTTCGCCGCGGTAACCGCGGAGAGTCCATACCGATTCTTTGA 259
Query 241 CTGGAATGTAACATACGGCGACATTTACCCACTCGGTGTTCGTCAGCAGGGAATATTGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CTGGAATGTAACATACGGCGACATTTACCCACTCGGTGTTCGTCAGCAGGGAATATTGAT 319
Query 301 TAATGGGAAATTTCCGGGACCGGACATTCACAGTGTGACAAACGACAATCTCATCATTAA 360
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 320 TAATGGGCAATTTCCGGGACCAGACATTCACAGTGTGACAAACGACAATCTCATCATTAA 379
Query 361 CGTACACAACAGCTTAGACGAGCCTTTCTTAATCTCATGGAACGGAGTACAAAACAGAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CGTACACAACAGCTTAGACGAGCCTTTCTTAATCTCATGGAACGGAGTACAAAACAGAAG 439
Query 421 AAATTCTTATGTCGATGGAATGTACGGAACCACGTGTCCAATTCCACCGAGAAGCAACTA 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AAATTCTTATGTTGATGGAATGTACGGAACCACGTGTCCAATTCCACCGAGAAGCAACTA 499
Query 481 CACATACATTTTGCAAGTGAAAGATCAAATTGGAAGTTTCTATTACTTCCCATCTCTTGC 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 500 CACATACATTTTGCAAGTGAAAGACCAAATTGGAAGTTTCTATTACTTCCCATCTCTTGC 559
Query 541 TTTTCACAAGGCAGCTGGTGGATTCGGAGGTATCAGAATCCTTAGTCGTCCTGGAATTCC 600
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 560 CTTTCACAAGGCAGCTGGTGGATTCGGAGGTATCAGAATCCTTAGCCGTCCTGGAATTCC 619
Query 601 AGTTCCATTCGCTGACCCTGCAGGAGATTATACTGTCCTCATTGGAAATTGGTACAAATC 660
||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 620 AGTTCCATTTGCTGACCCTGCAGGAGATTACACTGTCCTCATTGGAGATTGGTACAAATT 679
Query 661 TAATCACACGGATTTGAAGTCTCGTCTTGACAGAGGAAGGAAGTTACCTTTGCCTGATGG 720
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 680 TAATCACACGGATTTGAAGTCTCGTCTTGATAGAGGAAGGAAGTTACCTTCGCCTGATGG 739
Query 721 TATTCTTATCAATGGCCGAAGCAACGGTGCTACCTTAAACGTTGAACAAGGAAAAACATA 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 740 TATTCTTATCAATGGCCGAAGTAACGGTGCTACCTTAAACGTTGAACAAGGAAAAACATA 799
Query 781 CCGATTGAGGATATCAAACGTTGGATTACAAGATTCTCTAAATTTCAGAATCCAAAACCA 840
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 800 CCGATTGAGGATATCAAACGTTGGATTACAAGATTCTCTGAACTTCCGAATCCAAAACCA 859
Query 841 CAGAATGAAGCTTGTGGAAGTCGAAGGGACGCACACACTTCAAACCATGTTTTCCTCACT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 860 CAGAATGAAGCTTGTGGAAGTCGAAGGGACGCACACACTTCAAACCATGTTTTCCTCTCT 919
Query 901 GGACGTTCACGTTGGCCAGTCTTACTCCGTTCTGATTACTGCTGACCAATATCCTCGTGA 960
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 920 TGACGTTCACGTTGGCCAGTCTTACTCCGTTCTAATTACTGCTGACCAATCTCCTCGTGA 979
Query 961 CTACTACGTGGTTGTCTCGTCTCGGTTCACTAATAAAATCATAAC-AGCCACTGGCGTTC 1019
||||||||||||||| |||||||| ||||| ||||||||||||| | |||| || ||||
Sbjct 980 CTACTACGTGGTTGTTTCGTCTCGATTCACGGATAAAATCATAACCA-CCACCGGGGTTC 1038
Query 1020 TTCGCTACAGTGGCTCGTCCACCCCAGCTTCTGGTCCTATTCCTGGTGGTCCCACAATTC 1079
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct 1039 TTCGCTACAGTGGCTCGTCTACCCCTGCTTCTGGTCCTATTCCTGGCGGTCCCACTATTC 1098
Query 1080 AGGTTGATTGGTCCTTGAACCAAGCACGTGCCATCAGAACCAATTTGACGGCTAGTGGAC 1139
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1099 AGGTTGATTGGTCCTTGAACCAAGCACGTGCCATCAGAACCAATTTGACAGCTAGTGGAC 1158
Query 1140 CAAGACCTAACCCGCAAGGCTCATACCATTATGGTCTTATACCGCTCATTAGGACTATTG 1199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1159 CAAGACCAAACCCGCAAGGCTCATACCATTATGGTCTTATACCGCTCATTAGGACAATTG 1218
Query 1200 TTTTCGGTAGTTCAGCCGGACAGATAAATGGGAAACAAAGATATGGTGTCAATAGTGTGT 1259
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1219 TGTTCGGTAGTTCAGCCGGACAGATAAACGGGAAACAAAGATATGGTGTCAATAGTGTGT 1278
Query 1260 CATTTGTGCCAGCTGATACCCCTCTAAAACTGGCTGACTTCTTCAAGATTAGTGGTGTCT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1279 CATTTGTGCCAGCTGATACCCCTCTAAAACTGGCTGACTTCTTCAAGATTAGCGGTGTCT 1338
Query 1320 ATAAGATCAACAGCATCTCGGACAAACCCACATATGGAGGTTTATACCTTGACACATCCG 1379
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1339 ATAAGATCAACAGCATCTCAGACAAACCCACATATGGAGGTTTATACCTTGACACCTCAG 1398
Query 1380 TTTTGCAAGTCGACTATCGAACCTTTATCGAGATTGTATTCGAGAACCAAGAAGATATCG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 TTTTGCAAGTCGACTATCGAACCTTTATCGAGATTGTATTCGAGAACCAAGAAGATATCG 1458
Query 1440 TCCAAAGTTATCATCTCAATGGTTACTCCTTTTGGGTTGTCGGGATGGATGGTGGACAGT 1499
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1459 TCCAAAGTTATCATCTCAATGGTTACTCCTTTTGGGTGGTCGGGATGGATGGTGGACAGT 1518
Query 1500 GGAAGACAGGAAGCAGAAATGGTTATAATTTACGCGATGCAGTTTCACGTTCCACCGTCC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1519 GGAAGACAGGAAGCAGAAATGGTTATAATTTACGCGATGCAGTTTCACGTTCCACAGTCC 1578
Query 1560 AAGTGTACCCAAAATCCTGGACAGCCATTTACATTGCATTAGACAACGTAGGAATGTGGA 1619
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1579 AAGTGTACCCAAAATCATGGACAGCCATATACATTGCATTAGACAACGTTGGAATGTGGA 1638
Query 1620 ACTTAAGATCAGAGTTTTGGGCAAGACAGTACTTGGGACAACAACTTTATTTACGTGTCT 1679
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1639 ACTTAAGATCAGAATTTTGGGCAAGACAGTACTTGGGACAACAACTTTACTTACGTGTCT 1698
Query 1680 TCACGTCATCAACGTCTTTGAGAGATGAGTACCCTATCCCGAAGAATTCGCGTTTGTGCG 1739
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 TCACGTCATCTACGTCTTTGAGAGATGAGTACCCTATCCCGAAGAATTCGCGTTTGTGCG 1758
Query 1740 GCCGGGCAAAAGGACGACATACTAGGCCTTTGTAAGGAAGATATACGA--TTACGTGAAA 1797
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1759 GCCGGGCAAGAGGACGACATACTAGGCCTTTGTAAGGAAGATATACGAGCTTACGTGAAA 1818
Query 1798 GTCATCATATCCATACACGTTTATGTTATTTCTTGCGAAGACTTGCAAGGTTACAA 1853
|| ||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1819 TTCGTCATATCCATACACGTTTAAGT-ATTTCTTGGGAAGACTTGCAAGGTTACAA 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91716395715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5